Wall clock time and date at job start Mon Mar 30 2020 21:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47610 * 2 1 4 4 C 1.50702 * 109.46904 * 119.99731 * 2 1 3 5 5 H 1.07997 * 120.00090 * 114.00849 * 4 2 1 6 6 C 1.37876 * 120.00068 * 294.01092 * 4 2 1 7 7 N 1.31513 * 120.00100 * 155.14347 * 6 4 2 8 8 Si 1.86798 * 119.99812 * 335.14612 * 6 4 2 9 9 H 1.48509 * 109.47295 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47392 * 299.99871 * 8 6 4 11 11 H 1.48500 * 109.47291 * 60.00141 * 8 6 4 12 12 N 1.46897 * 109.46940 * 239.99091 * 2 1 3 13 13 C 1.46909 * 110.99794 * 82.49566 * 12 2 1 14 14 C 1.53113 * 109.52289 * 207.39383 * 13 12 2 15 15 C 1.53037 * 109.27730 * 182.43567 * 14 13 12 16 16 N 1.46849 * 109.52009 * 59.18275 * 15 14 13 17 17 C 1.46906 * 110.99868 * 174.16093 * 16 15 14 18 18 C 1.53003 * 109.46796 * 198.88201 * 17 16 15 19 19 F 1.39894 * 109.47136 * 298.84295 * 18 17 16 20 20 F 1.39899 * 109.47257 * 58.84665 * 18 17 16 21 21 C 1.46846 * 111.19731 * 298.25337 * 16 15 14 22 22 C 1.53035 * 109.52349 * 61.74492 * 21 16 15 23 23 H 1.09000 * 109.47551 * 303.82561 * 1 2 3 24 24 H 1.09003 * 109.47141 * 63.82165 * 1 2 3 25 25 H 1.09005 * 109.47651 * 183.82292 * 1 2 3 26 26 H 0.96993 * 119.99934 * 354.96684 * 7 6 4 27 27 H 1.00898 * 111.00190 * 206.44127 * 12 2 1 28 28 H 1.09003 * 109.51504 * 327.58212 * 13 12 2 29 29 H 1.09001 * 109.50320 * 302.37952 * 14 13 12 30 30 H 1.09002 * 109.50445 * 62.49965 * 14 13 12 31 31 H 1.08994 * 109.46639 * 299.16575 * 15 14 13 32 32 H 1.09001 * 109.46169 * 179.19004 * 15 14 13 33 33 H 1.09003 * 109.46615 * 318.87981 * 17 16 15 34 34 H 1.09002 * 109.47201 * 78.88163 * 17 16 15 35 35 H 1.09008 * 109.46340 * 178.84194 * 18 17 16 36 36 H 1.09001 * 109.46403 * 301.72696 * 21 16 15 37 37 H 1.09004 * 109.45611 * 181.75569 * 21 16 15 38 38 H 1.08997 * 109.50797 * 180.88251 * 22 21 16 39 39 H 1.09002 * 109.50455 * 60.76239 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5710 -1.6414 1.1345 6 6 1.8039 -0.1717 2.4790 7 7 1.7793 -0.9520 3.5374 8 14 1.5296 1.6664 2.6671 9 1 1.3073 1.9898 4.0994 10 1 2.7238 2.3983 2.1736 11 1 0.3390 2.0726 1.8780 12 7 2.0196 -0.6927 -1.1993 13 6 2.0262 0.2067 -2.3609 14 6 1.8630 -0.6131 -3.6437 15 6 1.9316 0.3222 -4.8531 16 7 3.2223 1.0225 -4.8593 17 6 3.3801 1.8248 -6.0798 18 6 4.8606 2.1495 -6.2887 19 9 5.3323 2.8948 -5.2029 20 9 5.5893 0.9595 -6.3894 21 6 3.3812 1.8536 -3.6591 22 6 3.3558 0.9642 -2.4141 23 1 -0.3634 0.5720 0.8537 24 1 -0.3633 0.4534 -0.9223 25 1 -0.3634 -1.0254 0.0685 26 1 1.8486 -1.9137 3.4326 27 1 2.9353 -1.0858 -1.0413 28 1 1.2048 0.9182 -2.2752 29 1 2.6628 -1.3508 -3.7083 30 1 0.8987 -1.1211 -3.6308 31 1 1.1232 1.0510 -4.7950 32 1 1.8301 -0.2603 -5.7688 33 1 3.0073 1.2616 -6.9354 34 1 2.8152 2.7517 -5.9809 35 1 4.9799 2.7272 -7.2054 36 1 2.5660 2.5753 -3.6066 37 1 4.3326 2.3834 -3.7077 38 1 3.4581 1.5829 -1.5226 39 1 4.1792 0.2513 -2.4593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:24:26 Heat of formation + Delta-G solvation = -105.109163 kcal Electronic energy + Delta-G solvation = -20741.096477 eV Core-core repulsion = 17353.780106 eV Total energy + Delta-G solvation = -3387.316371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.06458 -47.05598 -39.10246 -36.13957 -33.42445 -31.66816 -30.69782 -29.44206 -27.27714 -24.76782 -23.22171 -23.02061 -21.79452 -19.67357 -19.53062 -17.84587 -17.46602 -17.41023 -16.50294 -15.62044 -15.01066 -14.79747 -14.39869 -14.01694 -13.80658 -13.54371 -13.49180 -13.39599 -13.04954 -12.65745 -12.33324 -12.22521 -12.10603 -11.78146 -11.58477 -11.23368 -11.05923 -10.93739 -10.70050 -10.34993 -10.26742 -10.10186 -9.89328 -9.75129 -8.93906 -8.48979 -8.17420 -7.38889 -6.46328 -4.03397 3.39612 3.43248 3.50192 3.61160 3.73808 4.04904 4.29259 4.51085 4.68434 4.86709 5.02370 5.05809 5.14679 5.21487 5.27165 5.35911 5.47552 5.58494 5.72060 5.86003 5.91093 6.03488 6.20452 6.28813 6.45347 6.54798 6.60008 6.71900 6.83675 6.89756 6.96769 7.01261 7.50642 7.81723 8.21904 8.41885 8.56655 8.99058 9.61738 10.91029 Molecular weight = 262.16amu Principal moments of inertia in cm(-1) A = 0.031287 B = 0.004667 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.711981 B = 5998.680367 C = 6340.372686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.192 3.808 3 H -0.009 1.009 4 C -0.611 4.611 5 H 0.061 0.939 6 C 0.040 3.960 7 N -0.897 5.897 8 Si 1.036 2.964 9 H -0.285 1.285 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.675 5.675 13 C 0.084 3.916 14 C -0.102 4.102 15 C 0.059 3.941 16 N -0.532 5.532 17 C 0.001 3.999 18 C 0.270 3.730 19 F -0.203 7.203 20 F -0.197 7.197 21 C 0.040 3.960 22 C -0.143 4.143 23 H 0.044 0.956 24 H 0.017 0.983 25 H 0.049 0.951 26 H 0.270 0.730 27 H 0.338 0.662 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.031 0.969 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 7.771 -21.526 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.083 3.917 3 H 0.008 0.992 4 C -0.649 4.649 5 H 0.079 0.921 6 C -0.167 4.167 7 N -0.529 5.529 8 Si 0.864 3.136 9 H -0.211 1.211 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.305 5.305 13 C -0.027 4.027 14 C -0.140 4.140 15 C -0.069 4.069 16 N -0.257 5.257 17 C -0.129 4.129 18 C 0.216 3.784 19 F -0.184 7.184 20 F -0.178 7.178 21 C -0.088 4.088 22 C -0.182 4.182 23 H 0.063 0.937 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.156 0.844 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.049 0.951 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.989 8.295 -20.469 22.176 hybrid contribution 0.419 -0.025 -0.861 0.958 sum 2.407 8.270 -21.331 23.004 Atomic orbital electron populations 1.22045 0.98601 1.00641 0.97743 1.19363 0.91820 0.92207 0.88311 0.99200 1.21997 1.41219 1.10538 0.91124 0.92102 1.25622 0.93224 1.05692 0.92140 1.70833 1.43604 1.06280 1.32220 0.84151 0.77063 0.76378 0.76028 1.21059 1.21188 1.20482 1.60630 1.31212 1.34306 1.04352 1.21619 0.95447 0.93610 0.92011 1.21556 1.02491 0.97642 0.92323 1.22158 0.88374 0.96635 0.99735 1.61926 1.33817 1.28998 1.00926 1.23200 0.94072 0.99302 0.96307 1.21971 0.89421 0.78941 0.88074 1.92873 1.90147 1.77020 1.58369 1.93002 1.79481 1.48842 1.96464 1.22551 1.02170 0.94528 0.89504 1.22328 0.99931 0.99596 0.96377 0.93715 0.96374 0.93190 0.91992 0.84410 0.91689 0.91212 0.91045 0.94948 0.90867 0.88025 0.91802 0.87338 0.95080 0.88785 0.91330 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.11 37.16 0.34 -2.71 16 2 C 0.19 4.63 2.03 -68.87 -0.14 4.50 16 3 H -0.01 -0.23 5.89 -51.93 -0.31 -0.54 16 4 C -0.61 -17.25 8.75 -34.44 -0.30 -17.55 16 5 H 0.06 1.85 7.96 -52.49 -0.42 1.43 16 6 C 0.04 1.16 5.26 -17.82 -0.09 1.06 16 7 N -0.90 -27.55 13.70 55.43 0.76 -26.79 16 8 Si 1.04 25.38 26.60 -169.99 -4.52 20.86 16 9 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.40 6.03 56.52 0.34 -6.06 16 12 N -0.68 -14.16 6.06 -100.83 -0.61 -14.77 16 13 C 0.08 1.45 2.32 -67.59 -0.16 1.29 16 14 C -0.10 -1.48 5.70 -26.65 -0.15 -1.63 16 15 C 0.06 0.70 5.43 -3.83 -0.02 0.67 16 16 N -0.53 -6.49 4.50 -234.66 -1.06 -7.55 16 17 C 0.00 0.01 5.38 -3.82 -0.02 -0.01 16 18 C 0.27 2.36 5.59 37.16 0.21 2.57 16 19 F -0.20 -2.30 14.34 2.25 0.03 -2.27 16 20 F -0.20 -2.32 17.24 2.25 0.04 -2.28 16 21 C 0.04 0.55 5.22 -3.84 -0.02 0.53 16 22 C -0.14 -2.32 5.35 -26.65 -0.14 -2.46 16 23 H 0.04 1.05 5.62 -51.93 -0.29 0.76 16 24 H 0.02 0.36 7.23 -51.93 -0.38 -0.02 16 25 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.27 8.28 8.73 -40.82 -0.36 7.92 16 27 H 0.34 7.24 8.00 -39.29 -0.31 6.92 16 28 H 0.06 1.17 6.92 -51.93 -0.36 0.81 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 33 H 0.10 0.68 7.81 -51.93 -0.41 0.27 16 34 H 0.06 0.48 8.01 -51.93 -0.42 0.06 16 35 H 0.11 0.50 8.14 -51.92 -0.42 0.07 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 1.28 5.16 -51.93 -0.27 1.01 16 38 H 0.07 1.21 7.63 -51.93 -0.40 0.81 16 39 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -30.93 306.67 -7.37 -38.30 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.13 Total: 3.61 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.50 Total: -13.74 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.91 Total: -49.11 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.52 Total: 20.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.93 -7.37 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.807 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds