Wall clock time and date at job start Mon Mar 30 2020 21:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47610 * 2 1 4 4 C 1.50702 * 109.46904 * 119.99731 * 2 1 3 5 5 H 1.07997 * 120.00090 * 114.00849 * 4 2 1 6 6 C 1.37876 * 120.00068 * 294.01092 * 4 2 1 7 7 N 1.31513 * 120.00100 * 155.14347 * 6 4 2 8 8 Si 1.86798 * 119.99812 * 335.14612 * 6 4 2 9 9 H 1.48509 * 109.47295 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47392 * 299.99871 * 8 6 4 11 11 H 1.48500 * 109.47291 * 60.00141 * 8 6 4 12 12 N 1.46897 * 109.46940 * 239.99091 * 2 1 3 13 13 C 1.46909 * 110.99794 * 82.49566 * 12 2 1 14 14 C 1.53113 * 109.52289 * 207.39383 * 13 12 2 15 15 C 1.53037 * 109.27730 * 182.43567 * 14 13 12 16 16 N 1.46849 * 109.52009 * 59.18275 * 15 14 13 17 17 C 1.46906 * 110.99868 * 174.16093 * 16 15 14 18 18 C 1.53003 * 109.46796 * 198.88201 * 17 16 15 19 19 F 1.39894 * 109.47136 * 298.84295 * 18 17 16 20 20 F 1.39899 * 109.47257 * 58.84665 * 18 17 16 21 21 C 1.46846 * 111.19731 * 298.25337 * 16 15 14 22 22 C 1.53035 * 109.52349 * 61.74492 * 21 16 15 23 23 H 1.09000 * 109.47551 * 303.82561 * 1 2 3 24 24 H 1.09003 * 109.47141 * 63.82165 * 1 2 3 25 25 H 1.09005 * 109.47651 * 183.82292 * 1 2 3 26 26 H 0.96993 * 119.99934 * 354.96684 * 7 6 4 27 27 H 1.00898 * 111.00190 * 206.44127 * 12 2 1 28 28 H 1.09003 * 109.51504 * 327.58212 * 13 12 2 29 29 H 1.09001 * 109.50320 * 302.37952 * 14 13 12 30 30 H 1.09002 * 109.50445 * 62.49965 * 14 13 12 31 31 H 1.08994 * 109.46639 * 299.16575 * 15 14 13 32 32 H 1.09001 * 109.46169 * 179.19004 * 15 14 13 33 33 H 1.09003 * 109.46615 * 318.87981 * 17 16 15 34 34 H 1.09002 * 109.47201 * 78.88163 * 17 16 15 35 35 H 1.09008 * 109.46340 * 178.84194 * 18 17 16 36 36 H 1.09001 * 109.46403 * 301.72696 * 21 16 15 37 37 H 1.09004 * 109.45611 * 181.75569 * 21 16 15 38 38 H 1.08997 * 109.50797 * 180.88251 * 22 21 16 39 39 H 1.09002 * 109.50455 * 60.76239 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5710 -1.6414 1.1345 6 6 1.8039 -0.1717 2.4790 7 7 1.7793 -0.9520 3.5374 8 14 1.5296 1.6664 2.6671 9 1 1.3073 1.9898 4.0994 10 1 2.7238 2.3983 2.1736 11 1 0.3390 2.0726 1.8780 12 7 2.0196 -0.6927 -1.1993 13 6 2.0262 0.2067 -2.3609 14 6 1.8630 -0.6131 -3.6437 15 6 1.9316 0.3222 -4.8531 16 7 3.2223 1.0225 -4.8593 17 6 3.3801 1.8248 -6.0798 18 6 4.8606 2.1495 -6.2887 19 9 5.3323 2.8948 -5.2029 20 9 5.5893 0.9595 -6.3894 21 6 3.3812 1.8536 -3.6591 22 6 3.3558 0.9642 -2.4141 23 1 -0.3634 0.5720 0.8537 24 1 -0.3633 0.4534 -0.9223 25 1 -0.3634 -1.0254 0.0685 26 1 1.8486 -1.9137 3.4326 27 1 2.9353 -1.0858 -1.0413 28 1 1.2048 0.9182 -2.2752 29 1 2.6628 -1.3508 -3.7083 30 1 0.8987 -1.1211 -3.6308 31 1 1.1232 1.0510 -4.7950 32 1 1.8301 -0.2603 -5.7688 33 1 3.0073 1.2616 -6.9354 34 1 2.8152 2.7517 -5.9809 35 1 4.9799 2.7272 -7.2054 36 1 2.5660 2.5753 -3.6066 37 1 4.3326 2.3834 -3.7077 38 1 3.4581 1.5829 -1.5226 39 1 4.1792 0.2513 -2.4593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:24:25 Heat of formation + Delta-G solvation = -127.681848 kcal Electronic energy + Delta-G solvation = -20742.075302 eV Core-core repulsion = 17353.780106 eV Total energy + Delta-G solvation = -3388.295196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.155 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.79980 -47.82009 -40.24916 -37.65641 -35.14545 -33.36867 -31.81267 -30.72617 -28.59672 -26.81766 -24.27784 -24.15331 -22.76442 -21.42848 -20.92915 -19.59691 -18.50748 -18.18445 -17.28156 -16.76055 -16.62132 -15.90668 -15.65359 -15.34810 -15.12736 -14.91918 -14.66571 -14.46673 -14.18993 -14.17172 -13.81929 -13.41837 -13.20600 -13.11878 -12.88391 -12.73427 -12.52580 -12.33476 -12.16793 -12.00939 -11.84089 -11.62466 -11.35554 -11.15980 -11.07168 -10.40321 -9.36188 -9.08617 -8.76471 -6.35034 1.42823 1.48593 1.69059 2.46498 2.73166 2.98069 3.08937 3.43272 3.50021 3.68784 3.83217 3.95331 4.12220 4.17713 4.27248 4.41386 4.51265 4.57051 4.60853 4.63275 4.67039 4.71348 4.83932 4.91054 4.95057 5.02484 5.05119 5.14733 5.27237 5.39487 5.59050 5.82206 6.00824 6.02766 6.04755 6.32381 6.70584 6.79596 7.39116 8.58376 Molecular weight = 262.16amu Principal moments of inertia in cm(-1) A = 0.031287 B = 0.004667 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.711981 B = 5998.680367 C = 6340.372686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.195 3.805 3 H -0.007 1.007 4 C -0.615 4.615 5 H 0.022 0.978 6 C -0.009 4.009 7 N -0.928 5.928 8 Si 1.076 2.924 9 H -0.286 1.286 10 H -0.270 1.270 11 H -0.249 1.249 12 N -0.681 5.681 13 C 0.085 3.915 14 C -0.096 4.096 15 C 0.065 3.935 16 N -0.550 5.550 17 C 0.000 4.000 18 C 0.259 3.741 19 F -0.221 7.221 20 F -0.218 7.218 21 C 0.050 3.950 22 C -0.139 4.139 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.255 0.745 27 H 0.330 0.670 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.038 0.962 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 9.971 -24.370 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.010 0.990 4 C -0.653 4.653 5 H 0.040 0.960 6 C -0.209 4.209 7 N -0.562 5.562 8 Si 0.898 3.102 9 H -0.211 1.211 10 H -0.195 1.195 11 H -0.174 1.174 12 N -0.310 5.310 13 C -0.025 4.025 14 C -0.134 4.134 15 C -0.062 4.062 16 N -0.275 5.275 17 C -0.129 4.129 18 C 0.205 3.795 19 F -0.202 7.202 20 F -0.199 7.199 21 C -0.078 4.078 22 C -0.178 4.178 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.147 0.853 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.175 0.825 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.148 10.487 -23.357 25.629 hybrid contribution 0.735 -0.807 -0.037 1.092 sum 1.882 9.680 -23.394 25.387 Atomic orbital electron populations 1.21923 0.97368 0.99986 0.99125 1.19222 0.92624 0.91771 0.87856 0.98989 1.22203 1.40501 1.09257 0.93350 0.95957 1.27024 0.92527 1.09445 0.91908 1.70958 1.46441 1.05576 1.33231 0.83632 0.78779 0.71300 0.76506 1.21135 1.19506 1.17373 1.60624 1.30799 1.35177 1.04420 1.21721 0.95816 0.93467 0.91542 1.21482 1.02008 0.97713 0.92238 1.22111 0.88595 0.96472 0.99054 1.61857 1.34148 1.29812 1.01703 1.23374 0.94266 1.00006 0.95217 1.22616 0.89071 0.78557 0.89245 1.92832 1.90392 1.77371 1.59652 1.92959 1.80078 1.50350 1.96563 1.22388 1.02474 0.93993 0.88993 1.22216 0.98816 0.99396 0.97397 0.94165 0.93290 0.94660 0.93615 0.85251 0.91827 0.92420 0.91024 0.93934 0.88450 0.85512 0.89997 0.82511 0.94361 0.88874 0.93208 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 9.11 71.98 0.66 -4.97 16 2 C 0.19 9.35 2.03 44.17 0.09 9.44 16 3 H -0.01 -0.35 5.89 -2.39 -0.01 -0.36 16 4 C -0.62 -35.64 8.75 25.60 0.22 -35.42 16 5 H 0.02 1.42 7.96 -2.91 -0.02 1.40 16 6 C -0.01 -0.52 5.26 84.65 0.45 -0.07 16 7 N -0.93 -58.64 13.70 21.45 0.29 -58.35 16 8 Si 1.08 50.54 26.60 68.60 1.82 52.37 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.25 -10.50 6.03 99.48 0.60 -9.90 16 12 N -0.68 -28.66 6.06 -472.90 -2.86 -31.53 16 13 C 0.08 2.82 2.32 44.99 0.10 2.92 16 14 C -0.10 -2.62 5.70 30.64 0.17 -2.44 16 15 C 0.07 1.32 5.43 86.33 0.47 1.79 16 16 N -0.55 -11.84 4.50 -896.34 -4.03 -15.87 16 17 C 0.00 0.00 5.38 86.30 0.46 0.46 16 18 C 0.26 3.69 5.59 71.98 0.40 4.09 16 19 F -0.22 -4.54 14.34 44.97 0.65 -3.90 16 20 F -0.22 -4.69 17.24 44.97 0.78 -3.91 16 21 C 0.05 1.25 5.22 86.33 0.45 1.70 16 22 C -0.14 -4.42 5.35 30.65 0.16 -4.26 16 23 H 0.04 1.80 5.62 -2.39 -0.01 1.79 16 24 H 0.05 1.86 7.23 -2.39 -0.02 1.84 16 25 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.26 16.39 8.73 -92.71 -0.81 15.58 16 27 H 0.33 14.62 8.00 -89.70 -0.72 13.90 16 28 H 0.06 2.14 6.92 -2.39 -0.02 2.13 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 1.55 7.94 -2.39 -0.02 1.53 16 33 H 0.13 1.06 7.81 -2.39 -0.02 1.04 16 34 H 0.08 0.84 8.01 -2.39 -0.02 0.83 16 35 H 0.16 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 2.40 5.16 -2.39 -0.01 2.38 16 38 H 0.05 1.74 7.63 -2.39 -0.02 1.72 16 39 H 0.06 1.95 8.09 -2.39 -0.02 1.93 16 Total: -1.00 -68.91 306.67 0.47 -68.44 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.18 Total: 19.50 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 3.64 Total: -26.75 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -6.60 Total: -105.75 kcal Atomic # 9 Polarization: -9.23 SS G_CDS: 1.42 Total: -7.81 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.82 Total: 52.37 kcal Total: -68.91 0.47 -68.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.238 kcal (2) G-P(sol) polarization free energy of solvation -68.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds