Wall clock time and date at job start Mon Mar 30 2020 21:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35948 * 117.00141 * 2 1 4 4 C 1.38560 * 120.08511 * 359.97438 * 3 2 1 5 5 C 1.38240 * 120.01296 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.90670 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46964 * 270.02245 * 6 5 4 8 8 C 1.46901 * 110.99775 * 180.02562 * 7 6 5 9 9 C 1.53000 * 117.49725 * 223.74706 * 8 7 6 10 10 C 1.52993 * 117.49902 * 155.08628 * 8 7 6 11 11 C 1.38319 * 120.18571 * 0.02562 * 5 4 3 12 12 C 1.38156 * 120.16957 * 0.02562 * 11 5 4 13 13 C 1.38763 * 119.98347 * 0.25460 * 12 11 5 14 14 O 1.35808 * 120.08734 * 179.69594 * 13 12 11 15 15 C 1.34805 * 117.00203 * 354.40538 * 14 13 12 16 16 H 1.08003 * 119.99767 * 5.05917 * 15 14 13 17 17 C 1.38637 * 120.00017 * 185.05711 * 15 14 13 18 18 N 1.31576 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00277 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46910 * 90.00328 * 19 17 15 21 21 H 1.48493 * 109.47416 * 210.00584 * 19 17 15 22 22 H 1.48500 * 109.47082 * 330.00741 * 19 17 15 23 23 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47312 * 300.00271 * 1 2 3 25 25 H 1.08998 * 109.46981 * 59.99997 * 1 2 3 26 26 H 1.08004 * 119.99300 * 359.97438 * 4 3 2 27 27 H 1.08997 * 109.47107 * 30.02023 * 6 5 4 28 28 H 1.08994 * 109.46943 * 150.02264 * 6 5 4 29 29 H 1.00896 * 110.99820 * 56.04414 * 7 6 5 30 30 H 1.08998 * 115.54932 * 9.41132 * 8 7 6 31 31 H 1.09002 * 117.49892 * 359.97438 * 9 8 7 32 32 H 1.08992 * 117.50158 * 145.01736 * 9 8 7 33 33 H 1.08996 * 117.49937 * 214.97836 * 10 8 7 34 34 H 1.09004 * 117.50044 * 359.97438 * 10 8 7 35 35 H 1.07991 * 119.91498 * 179.97438 * 11 5 4 36 36 H 1.08001 * 120.01096 * 179.97438 * 12 11 5 37 37 H 0.97000 * 119.99987 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2933 2.3745 -0.0005 5 6 1.9225 3.6054 0.0000 6 6 1.1012 4.8690 -0.0012 7 7 0.8356 5.2791 -1.3866 8 6 0.0359 6.5107 -1.4269 9 6 -1.1208 6.5695 -2.4267 10 6 0.1496 7.3862 -2.6764 11 6 3.3036 3.6805 0.0005 12 6 4.0618 2.5255 0.0000 13 6 3.4375 1.2863 -0.0064 14 8 4.1807 0.1496 -0.0132 15 6 5.5161 0.2922 -0.1304 16 1 5.9558 1.2786 -0.1313 17 6 6.3249 -0.8275 -0.2497 18 7 5.7891 -2.0292 -0.2491 19 14 8.1752 -0.6300 -0.4129 20 1 8.7943 -0.6332 0.9370 21 1 8.7246 -1.7545 -1.2120 22 1 8.4779 0.6549 -1.0931 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2147 2.3195 -0.0014 27 1 0.1566 4.6889 0.5119 28 1 1.6490 5.6588 0.5128 29 1 0.3855 4.5382 -1.9029 30 1 -0.0999 7.0145 -0.4700 31 1 -1.2881 5.6945 -3.0548 32 1 -2.0173 7.1124 -2.1277 33 1 0.0882 8.4660 -2.5416 34 1 0.8181 7.0486 -3.4685 35 1 3.7906 4.6444 0.0005 36 1 5.1400 2.5872 0.0000 37 1 6.3550 -2.8126 -0.3329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037486607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:22:49 Heat of formation + Delta-G solvation = -8.004916 kcal Electronic energy + Delta-G solvation = -19193.847799 eV Core-core repulsion = 16131.419958 eV Total energy + Delta-G solvation = -3062.427842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63088 -37.99102 -37.46870 -36.28607 -33.27487 -32.15503 -29.47822 -29.13152 -26.83721 -25.49895 -24.00713 -22.48809 -21.61509 -21.24892 -20.59489 -17.99353 -17.45083 -16.35255 -16.07998 -15.36245 -15.23775 -15.12718 -14.52994 -14.09799 -13.83965 -13.53700 -13.37521 -13.17795 -13.05675 -12.52996 -11.84511 -11.64440 -11.60667 -11.45849 -11.41812 -10.98344 -10.92107 -10.85020 -10.64502 -10.45188 -10.29862 -10.20321 -9.40484 -8.79953 -8.21442 -7.85843 -6.90922 -6.40017 -3.96487 2.12782 2.27953 3.15603 3.16750 3.21737 3.72319 3.99191 4.02533 4.10297 4.60428 4.79376 4.85653 5.04118 5.08036 5.18764 5.29005 5.43382 5.49279 5.50234 5.55037 5.56447 5.75179 5.79405 5.84550 5.88306 5.91954 6.03796 6.29893 6.39600 6.65089 6.89482 7.08801 7.12981 7.27558 7.38230 7.42762 7.64722 7.99976 8.19443 9.04264 9.75409 10.77352 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.004472 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.467603 B = 6259.317959 C = 7124.875157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.055 3.945 4 C -0.158 4.158 5 C -0.155 4.155 6 C 0.120 3.880 7 N -0.654 5.654 8 C 0.024 3.976 9 C -0.211 4.211 10 C -0.174 4.174 11 C -0.074 4.074 12 C -0.214 4.214 13 C 0.137 3.863 14 O -0.164 6.164 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.858 5.858 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 H 0.090 0.910 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.344 0.656 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.799 12.707 -1.038 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.217 6.217 3 C 0.010 3.990 4 C -0.178 4.178 5 C -0.156 4.156 6 C -0.008 4.008 7 N -0.284 5.284 8 C -0.087 4.087 9 C -0.250 4.250 10 C -0.212 4.212 11 C -0.093 4.093 12 C -0.234 4.234 13 C 0.082 3.918 14 O -0.067 6.067 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.492 5.492 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.191 1.191 23 H 0.109 0.891 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.132 0.868 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.163 0.837 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.074 12.322 -1.093 15.954 hybrid contribution -0.218 -0.031 0.090 0.238 sum -10.293 12.292 -1.003 16.063 Atomic orbital electron populations 1.22868 0.80543 1.02850 1.00104 1.86240 1.19260 1.26493 1.89703 1.18153 0.89491 0.84388 1.07000 1.20532 0.98132 0.91384 1.07736 1.18860 0.93599 0.92445 1.10745 1.20662 0.96978 0.94970 0.88170 1.60319 1.48334 1.05335 1.14441 1.22449 0.96645 0.95228 0.94329 1.23428 0.93131 1.03620 1.04828 1.23112 0.99746 0.97433 1.00920 1.20508 0.92641 0.97155 0.99011 1.20935 1.00597 0.90933 1.10931 1.18698 0.88276 0.87880 0.96899 1.84065 1.19281 1.25284 1.78074 1.21367 0.78667 0.94774 1.51930 0.89032 1.25297 1.00398 0.94259 0.96582 1.70076 1.36062 0.97645 1.45409 0.85717 0.80648 0.78448 0.78642 1.19893 1.20274 1.19132 0.89123 0.93711 0.93717 0.86786 0.95224 0.90796 0.83674 0.87562 0.88807 0.89055 0.88995 0.88409 0.87198 0.84868 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.30 -6.70 10.28 -34.00 -0.35 -7.05 16 3 C 0.05 1.22 6.70 -39.05 -0.26 0.95 16 4 C -0.16 -2.87 8.69 -39.46 -0.34 -3.21 16 5 C -0.15 -2.66 5.39 -104.59 -0.56 -3.22 16 6 C 0.12 1.63 5.66 -4.97 -0.03 1.60 16 7 N -0.65 -8.46 6.77 -107.99 -0.73 -9.19 16 8 C 0.02 0.26 6.31 -67.72 -0.43 -0.17 16 9 C -0.21 -1.93 10.23 -26.69 -0.27 -2.20 16 10 C -0.17 -1.69 10.46 -26.70 -0.28 -1.97 16 11 C -0.07 -1.39 9.69 -39.58 -0.38 -1.77 16 12 C -0.21 -4.73 9.16 -39.42 -0.36 -5.09 16 13 C 0.14 3.43 6.66 -38.98 -0.26 3.17 16 14 O -0.16 -4.85 9.54 -14.48 -0.14 -4.99 16 15 C -0.39 -11.13 9.49 30.88 0.29 -10.84 16 16 H 0.09 2.39 5.21 -52.48 -0.27 2.11 16 17 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 18 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 19 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 25 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 26 H 0.11 1.73 6.30 -52.48 -0.33 1.40 16 27 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.34 4.42 8.51 -39.29 -0.33 4.09 16 30 H 0.11 1.03 7.90 -51.93 -0.41 0.62 16 31 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -31.96 316.96 -7.65 -39.61 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.95 Total: 6.29 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.99 Total: -20.27 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.03 Total: -34.09 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.49 Total: -12.04 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.96 -7.65 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037486607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.608 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds