Wall clock time and date at job start Mon Mar 30 2020 21:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35948 * 117.00141 * 2 1 4 4 C 1.38560 * 120.08511 * 359.97438 * 3 2 1 5 5 C 1.38240 * 120.01296 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.90670 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46964 * 270.02245 * 6 5 4 8 8 C 1.46901 * 110.99775 * 180.02562 * 7 6 5 9 9 C 1.53000 * 117.49725 * 223.74706 * 8 7 6 10 10 C 1.52993 * 117.49902 * 155.08628 * 8 7 6 11 11 C 1.38319 * 120.18571 * 0.02562 * 5 4 3 12 12 C 1.38156 * 120.16957 * 0.02562 * 11 5 4 13 13 C 1.38763 * 119.98347 * 0.25460 * 12 11 5 14 14 O 1.35808 * 120.08734 * 179.69594 * 13 12 11 15 15 C 1.34805 * 117.00203 * 354.40538 * 14 13 12 16 16 H 1.08003 * 119.99767 * 5.05917 * 15 14 13 17 17 C 1.38637 * 120.00017 * 185.05711 * 15 14 13 18 18 N 1.31576 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00277 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46910 * 90.00328 * 19 17 15 21 21 H 1.48493 * 109.47416 * 210.00584 * 19 17 15 22 22 H 1.48500 * 109.47082 * 330.00741 * 19 17 15 23 23 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47312 * 300.00271 * 1 2 3 25 25 H 1.08998 * 109.46981 * 59.99997 * 1 2 3 26 26 H 1.08004 * 119.99300 * 359.97438 * 4 3 2 27 27 H 1.08997 * 109.47107 * 30.02023 * 6 5 4 28 28 H 1.08994 * 109.46943 * 150.02264 * 6 5 4 29 29 H 1.00896 * 110.99820 * 56.04414 * 7 6 5 30 30 H 1.08998 * 115.54932 * 9.41132 * 8 7 6 31 31 H 1.09002 * 117.49892 * 359.97438 * 9 8 7 32 32 H 1.08992 * 117.50158 * 145.01736 * 9 8 7 33 33 H 1.08996 * 117.49937 * 214.97836 * 10 8 7 34 34 H 1.09004 * 117.50044 * 359.97438 * 10 8 7 35 35 H 1.07991 * 119.91498 * 179.97438 * 11 5 4 36 36 H 1.08001 * 120.01096 * 179.97438 * 12 11 5 37 37 H 0.97000 * 119.99987 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2933 2.3745 -0.0005 5 6 1.9225 3.6054 0.0000 6 6 1.1012 4.8690 -0.0012 7 7 0.8356 5.2791 -1.3866 8 6 0.0359 6.5107 -1.4269 9 6 -1.1208 6.5695 -2.4267 10 6 0.1496 7.3862 -2.6764 11 6 3.3036 3.6805 0.0005 12 6 4.0618 2.5255 0.0000 13 6 3.4375 1.2863 -0.0064 14 8 4.1807 0.1496 -0.0132 15 6 5.5161 0.2922 -0.1304 16 1 5.9558 1.2786 -0.1313 17 6 6.3249 -0.8275 -0.2497 18 7 5.7891 -2.0292 -0.2491 19 14 8.1752 -0.6300 -0.4129 20 1 8.7943 -0.6332 0.9370 21 1 8.7246 -1.7545 -1.2120 22 1 8.4779 0.6549 -1.0931 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2147 2.3195 -0.0014 27 1 0.1566 4.6889 0.5119 28 1 1.6490 5.6588 0.5128 29 1 0.3855 4.5382 -1.9029 30 1 -0.0999 7.0145 -0.4700 31 1 -1.2881 5.6945 -3.0548 32 1 -2.0173 7.1124 -2.1277 33 1 0.0882 8.4660 -2.5416 34 1 0.8181 7.0486 -3.4685 35 1 3.7906 4.6444 0.0005 36 1 5.1400 2.5872 0.0000 37 1 6.3550 -2.8126 -0.3329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037486607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:22:48 Heat of formation + Delta-G solvation = -29.989006 kcal Electronic energy + Delta-G solvation = -19194.801101 eV Core-core repulsion = 16131.419958 eV Total energy + Delta-G solvation = -3063.381144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27406 -39.22993 -38.95667 -37.72368 -34.62025 -33.98011 -31.07345 -30.60006 -28.14623 -27.41667 -25.40710 -23.27033 -23.16232 -22.21278 -22.00495 -19.84790 -19.17600 -17.93454 -16.99626 -16.90734 -16.60743 -16.37516 -16.26010 -15.50802 -15.26977 -15.19864 -14.89887 -14.55503 -14.23345 -13.82098 -13.47904 -13.02744 -13.00107 -12.82851 -12.55851 -12.48078 -12.33331 -12.14453 -11.91189 -11.79283 -11.65720 -11.30387 -11.16743 -10.77228 -9.50883 -9.10622 -8.64108 -8.43046 -6.09426 0.51251 0.65660 1.35849 1.45492 1.54049 2.19613 2.59152 2.73081 2.97738 3.10269 3.38150 3.44816 3.93718 4.03441 4.08232 4.15700 4.25140 4.30727 4.39548 4.41826 4.49355 4.62055 4.67354 4.70533 4.83171 4.83667 4.88404 5.07635 5.10957 5.14249 5.32387 5.38728 5.58473 5.78603 5.98589 6.05773 6.17460 6.41267 6.65347 7.00613 7.84026 8.80256 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.004472 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.467603 B = 6259.317959 C = 7124.875157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.346 6.346 3 C 0.042 3.958 4 C -0.148 4.148 5 C -0.123 4.123 6 C 0.124 3.876 7 N -0.667 5.667 8 C 0.014 3.986 9 C -0.200 4.200 10 C -0.178 4.178 11 C -0.081 4.081 12 C -0.213 4.213 13 C 0.083 3.917 14 O -0.224 6.224 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.252 1.252 23 H 0.107 0.893 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.153 0.847 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.343 0.657 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.493 16.070 -1.052 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.261 6.261 3 C -0.003 4.003 4 C -0.167 4.167 5 C -0.125 4.125 6 C -0.003 4.003 7 N -0.298 5.298 8 C -0.096 4.096 9 C -0.239 4.239 10 C -0.216 4.216 11 C -0.100 4.100 12 C -0.233 4.233 13 C 0.033 3.967 14 O -0.131 6.131 15 C -0.490 4.490 16 H 0.120 0.880 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.175 1.175 23 H 0.126 0.874 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.170 0.830 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.162 0.838 30 H 0.138 0.862 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.824 15.756 -1.106 19.730 hybrid contribution -0.064 -0.781 0.086 0.788 sum -11.888 14.976 -1.020 19.148 Atomic orbital electron populations 1.23252 0.77149 1.04848 1.02012 1.86185 1.22963 1.27140 1.89845 1.18517 0.89031 0.85881 1.06861 1.20942 0.99824 0.90141 1.05835 1.19436 0.93474 0.93983 1.05560 1.20668 0.97404 0.93074 0.89203 1.60240 1.49655 1.06186 1.13700 1.22530 0.97392 0.94357 0.95341 1.23472 0.93323 1.03404 1.03663 1.23164 0.99992 0.98341 1.00084 1.20844 0.93464 0.97042 0.98657 1.21086 1.00704 0.91303 1.10183 1.19393 0.89770 0.88054 0.99532 1.84027 1.19772 1.27636 1.81668 1.21877 0.79220 0.95629 1.52279 0.88038 1.26621 1.06021 0.93574 0.95987 1.70234 1.38223 0.98733 1.48727 0.84575 0.73385 0.78995 0.79149 1.18717 1.19650 1.17539 0.87437 0.91554 0.91672 0.82998 0.93017 0.89434 0.83797 0.86211 0.89038 0.87383 0.87486 0.89709 0.84273 0.85650 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.74 16 2 O -0.35 -15.66 10.28 -79.17 -0.81 -16.47 16 3 C 0.04 1.89 6.70 22.61 0.15 2.04 16 4 C -0.15 -5.00 8.69 22.35 0.19 -4.80 16 5 C -0.12 -3.83 5.39 -19.84 -0.11 -3.94 16 6 C 0.12 2.78 5.66 85.56 0.48 3.27 16 7 N -0.67 -14.62 6.77 -495.58 -3.35 -17.97 16 8 C 0.01 0.24 6.31 44.91 0.28 0.52 16 9 C -0.20 -2.90 10.23 30.62 0.31 -2.59 16 10 C -0.18 -2.88 10.46 30.62 0.32 -2.56 16 11 C -0.08 -2.88 9.69 22.27 0.22 -2.66 16 12 C -0.21 -9.59 9.16 22.38 0.21 -9.38 16 13 C 0.08 4.35 6.66 22.66 0.15 4.50 16 14 O -0.22 -14.23 9.54 -9.33 -0.09 -14.32 16 15 C -0.41 -25.02 9.49 67.92 0.64 -24.38 16 16 H 0.10 5.59 5.21 -2.91 -0.02 5.57 16 17 C -0.02 -1.46 5.49 84.83 0.47 -1.00 16 18 N -0.92 -58.68 13.67 21.61 0.30 -58.38 16 19 Si 1.02 44.11 29.55 68.60 2.03 46.13 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 23 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.07 1.59 7.66 -2.39 -0.02 1.57 16 25 H 0.06 1.58 7.66 -2.39 -0.02 1.56 16 26 H 0.15 3.93 6.30 -2.91 -0.02 3.91 16 27 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 28 H 0.09 1.80 8.08 -2.39 -0.02 1.79 16 29 H 0.34 7.56 8.51 -89.70 -0.76 6.79 16 30 H 0.12 1.75 7.90 -2.39 -0.02 1.73 16 31 H 0.09 1.38 8.09 -2.39 -0.02 1.37 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.14 4.11 8.06 -2.92 -0.02 4.08 16 36 H 0.13 5.68 5.64 -2.91 -0.02 5.67 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -76.21 316.96 2.82 -73.39 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.32 Total: 26.85 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 4.43 Total: -39.23 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -3.06 Total: -76.35 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.90 Total: -30.79 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -76.21 2.82 -73.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037486607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.397 kcal (2) G-P(sol) polarization free energy of solvation -76.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds