Wall clock time and date at job start Mon Mar 30 2020 21:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46992 * 2 1 4 4 C 1.50700 * 109.47230 * 119.99503 * 2 1 3 5 5 H 1.08005 * 119.99825 * 119.99538 * 4 2 1 6 6 C 1.37876 * 119.99788 * 300.00634 * 4 2 1 7 7 N 1.31503 * 120.00371 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99614 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47191 * 89.99586 * 8 6 4 10 10 H 1.48506 * 109.47044 * 210.00003 * 8 6 4 11 11 H 1.48501 * 109.47281 * 329.99359 * 8 6 4 12 12 N 1.46505 * 109.47397 * 239.99980 * 2 1 3 13 13 C 1.46503 * 119.99668 * 299.99919 * 12 2 1 14 14 C 1.34767 * 120.00324 * 119.99945 * 12 2 1 15 15 O 1.21287 * 120.00029 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00235 * 179.97438 * 14 12 2 17 17 C 1.50707 * 109.47216 * 180.02562 * 16 14 12 18 18 C 1.38289 * 119.96926 * 270.02147 * 17 16 14 19 19 C 1.38241 * 120.11011 * 179.97438 * 18 17 16 20 20 C 1.38171 * 120.05827 * 359.76279 * 19 18 17 21 21 C 1.38709 * 119.93737 * 0.49143 * 20 19 18 22 22 O 1.35905 * 120.05346 * 179.76780 * 21 20 19 23 23 C 1.38116 * 119.97322 * 90.00175 * 17 16 14 24 24 H 1.08993 * 109.47296 * 300.00596 * 1 2 3 25 25 H 1.09009 * 109.47006 * 60.00468 * 1 2 3 26 26 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00430 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47115 * 269.99948 * 13 12 2 29 29 H 1.08996 * 109.47147 * 30.00122 * 13 12 2 30 30 H 1.08999 * 109.46808 * 149.99817 * 13 12 2 31 31 H 1.09002 * 109.47278 * 59.99844 * 16 14 12 32 32 H 1.09000 * 109.47104 * 299.99639 * 16 14 12 33 33 H 1.08001 * 119.94341 * 0.02562 * 18 17 16 34 34 H 1.08006 * 119.97348 * 180.02562 * 19 18 17 35 35 H 1.07996 * 120.02965 * 180.25400 * 20 19 18 36 36 H 0.96705 * 113.99576 * 269.72355 * 22 21 20 37 37 H 1.08003 * 120.03068 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.6295 -0.5457 4.4124 10 1 1.3429 -0.9490 5.1121 11 1 2.4857 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.0858 1.1256 -1.8917 16 6 3.2960 -0.7463 -3.3134 17 6 4.1337 0.2008 -4.1335 18 6 3.5398 0.9810 -5.1086 19 6 4.3053 1.8512 -5.8622 20 6 5.6656 1.9469 -5.6394 21 6 6.2645 1.1615 -4.6655 22 8 7.6030 1.2503 -4.4477 23 6 5.4939 0.2891 -3.9103 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7087 1.1615 3.4843 28 1 2.4158 -2.7377 -0.9716 29 1 0.6905 -2.3002 -0.9846 30 1 1.6238 -2.2853 -2.5001 31 1 2.4485 -1.0893 -3.9069 32 1 3.9019 -1.6024 -3.0164 33 1 2.4759 0.9111 -5.2811 34 1 3.8391 2.4598 -6.6229 35 1 6.2625 2.6298 -6.2256 36 1 8.1295 0.6378 -4.9796 37 1 5.9573 -0.3206 -3.1487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:24:42 Heat of formation + Delta-G solvation = -54.093390 kcal Electronic energy + Delta-G solvation = -19565.927292 eV Core-core repulsion = 16501.500904 eV Total energy + Delta-G solvation = -3064.426388 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90838 -38.80990 -36.73116 -35.26169 -33.00642 -32.30814 -29.90728 -29.47133 -27.19053 -26.05267 -25.18570 -22.54073 -22.17818 -20.70625 -18.44593 -17.80528 -16.61676 -16.32693 -16.15789 -15.79384 -15.32761 -14.97285 -14.50159 -14.20498 -13.77092 -13.05262 -12.92199 -12.64374 -12.54507 -12.09075 -12.04392 -11.62852 -11.57253 -11.48271 -11.25376 -11.03338 -10.81690 -10.68921 -10.42384 -10.22503 -10.15087 -9.19207 -9.04170 -8.68755 -8.46784 -8.39522 -7.56566 -6.05668 -4.13667 1.32658 1.41909 3.28160 3.34171 3.35407 3.42353 3.64192 4.04804 4.24116 4.42196 4.81046 4.93039 5.16702 5.24222 5.30971 5.37445 5.39959 5.60311 5.65629 5.74855 5.95489 6.04431 6.08684 6.29673 6.44589 6.46954 6.66386 6.76968 6.82554 6.88079 7.07096 7.45211 7.54319 7.66438 7.73227 8.03254 8.21544 8.55185 8.85474 9.08799 9.52961 10.99669 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026796 B = 0.004651 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.665568 B = 6018.708648 C = 6426.275858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.595 5.595 13 C 0.086 3.914 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.106 4.106 17 C -0.038 4.038 18 C -0.114 4.114 19 C -0.105 4.105 20 C -0.151 4.151 21 C 0.102 3.898 22 O -0.499 6.499 23 C -0.129 4.129 24 H 0.093 0.907 25 H 0.011 0.989 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.385 0.615 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -4.978 -16.344 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.327 5.327 13 C -0.058 4.058 14 C 0.290 3.710 15 O -0.422 6.422 16 C -0.146 4.146 17 C -0.038 4.038 18 C -0.132 4.132 19 C -0.123 4.123 20 C -0.170 4.170 21 C 0.058 3.942 22 O -0.308 6.308 23 C -0.148 4.148 24 H 0.112 0.888 25 H 0.030 0.970 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.240 0.760 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.124 -3.810 -15.660 16.912 hybrid contribution 0.438 -0.918 0.681 1.224 sum 5.563 -4.728 -14.979 16.664 Atomic orbital electron populations 1.22091 0.98278 0.99301 1.00830 1.18934 0.90816 0.94554 0.79985 0.91925 1.21317 1.31759 1.12952 0.90318 0.92335 1.24894 0.94955 0.94992 0.98971 1.69874 1.36384 1.22645 1.23735 0.86496 0.78664 0.79838 0.82388 1.20620 1.21125 1.19936 1.48243 1.49141 1.11641 1.23642 1.21566 1.01674 0.83287 0.99281 1.20204 0.79424 0.87222 0.84133 1.90688 1.57859 1.16986 1.76653 1.20792 1.00055 0.98158 0.95560 1.19269 0.92968 0.96685 0.94922 1.21015 0.99767 0.96367 0.96098 1.20939 0.93327 0.98351 0.99660 1.21327 0.95747 1.01111 0.98801 1.18398 0.83512 0.96602 0.95731 1.84869 1.14829 1.63711 1.67426 1.21261 0.93937 0.99535 1.00055 0.88821 0.97012 0.95118 0.92699 0.93315 0.90853 0.92950 0.88392 0.88445 0.85949 0.85759 0.85797 0.75975 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.95 37.16 0.33 -3.19 16 2 C 0.26 6.65 2.63 -69.08 -0.18 6.47 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.34 8.37 -34.44 -0.29 -14.62 16 5 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.81 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.59 -12.66 2.75 -175.26 -0.48 -13.15 16 13 C 0.09 1.40 9.48 59.85 0.57 1.97 16 14 C 0.50 10.44 7.67 -10.99 -0.08 10.36 16 15 O -0.54 -13.80 15.36 5.55 0.09 -13.71 16 16 C -0.11 -1.55 4.38 -29.03 -0.13 -1.67 16 17 C -0.04 -0.57 4.37 -104.64 -0.46 -1.03 16 18 C -0.11 -1.57 9.70 -39.56 -0.38 -1.95 16 19 C -0.10 -1.29 10.04 -39.60 -0.40 -1.69 16 20 C -0.15 -1.91 9.99 -39.43 -0.39 -2.31 16 21 C 0.10 1.42 6.70 -39.22 -0.26 1.15 16 22 O -0.50 -6.17 13.50 -19.44 -0.26 -6.44 16 23 C -0.13 -1.94 9.64 -39.43 -0.38 -2.32 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 25 H 0.01 0.25 8.14 -51.92 -0.42 -0.18 16 26 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 30 H 0.05 0.64 6.44 -51.93 -0.33 0.31 16 31 H 0.10 1.15 7.34 -51.93 -0.38 0.77 16 32 H 0.10 1.23 8.05 -51.93 -0.42 0.81 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.39 2.57 9.06 45.56 0.41 2.98 16 37 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 312.45 15.07 4.71 4.71 Total: -1.00 -34.12 312.45 -6.64 -40.77 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.15 Total: 3.57 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.15 Total: -7.16 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.14 Total: -37.95 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.18 Total: -20.15 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.12 -6.64 -40.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.328 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds