Wall clock time and date at job start Mon Mar 30 2020 21:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46992 * 2 1 4 4 C 1.50700 * 109.47230 * 119.99503 * 2 1 3 5 5 H 1.08005 * 119.99825 * 119.99538 * 4 2 1 6 6 C 1.37876 * 119.99788 * 300.00634 * 4 2 1 7 7 N 1.31503 * 120.00371 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99614 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47191 * 89.99586 * 8 6 4 10 10 H 1.48506 * 109.47044 * 210.00003 * 8 6 4 11 11 H 1.48501 * 109.47281 * 329.99359 * 8 6 4 12 12 N 1.46505 * 109.47397 * 239.99980 * 2 1 3 13 13 C 1.46503 * 119.99668 * 299.99919 * 12 2 1 14 14 C 1.34767 * 120.00324 * 119.99945 * 12 2 1 15 15 O 1.21287 * 120.00029 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00235 * 179.97438 * 14 12 2 17 17 C 1.50707 * 109.47216 * 180.02562 * 16 14 12 18 18 C 1.38289 * 119.96926 * 270.02147 * 17 16 14 19 19 C 1.38241 * 120.11011 * 179.97438 * 18 17 16 20 20 C 1.38171 * 120.05827 * 359.76279 * 19 18 17 21 21 C 1.38709 * 119.93737 * 0.49143 * 20 19 18 22 22 O 1.35905 * 120.05346 * 179.76780 * 21 20 19 23 23 C 1.38116 * 119.97322 * 90.00175 * 17 16 14 24 24 H 1.08993 * 109.47296 * 300.00596 * 1 2 3 25 25 H 1.09009 * 109.47006 * 60.00468 * 1 2 3 26 26 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00430 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47115 * 269.99948 * 13 12 2 29 29 H 1.08996 * 109.47147 * 30.00122 * 13 12 2 30 30 H 1.08999 * 109.46808 * 149.99817 * 13 12 2 31 31 H 1.09002 * 109.47278 * 59.99844 * 16 14 12 32 32 H 1.09000 * 109.47104 * 299.99639 * 16 14 12 33 33 H 1.08001 * 119.94341 * 0.02562 * 18 17 16 34 34 H 1.08006 * 119.97348 * 180.02562 * 19 18 17 35 35 H 1.07996 * 120.02965 * 180.25400 * 20 19 18 36 36 H 0.96705 * 113.99576 * 269.72355 * 22 21 20 37 37 H 1.08003 * 120.03068 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.6295 -0.5457 4.4124 10 1 1.3429 -0.9490 5.1121 11 1 2.4857 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.0858 1.1256 -1.8917 16 6 3.2960 -0.7463 -3.3134 17 6 4.1337 0.2008 -4.1335 18 6 3.5398 0.9810 -5.1086 19 6 4.3053 1.8512 -5.8622 20 6 5.6656 1.9469 -5.6394 21 6 6.2645 1.1615 -4.6655 22 8 7.6030 1.2503 -4.4477 23 6 5.4939 0.2891 -3.9103 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7087 1.1615 3.4843 28 1 2.4158 -2.7377 -0.9716 29 1 0.6905 -2.3002 -0.9846 30 1 1.6238 -2.2853 -2.5001 31 1 2.4485 -1.0893 -3.9069 32 1 3.9019 -1.6024 -3.0164 33 1 2.4759 0.9111 -5.2811 34 1 3.8391 2.4598 -6.6229 35 1 6.2625 2.6298 -6.2256 36 1 8.1295 0.6378 -4.9796 37 1 5.9573 -0.3206 -3.1487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:24:41 Heat of formation + Delta-G solvation = -77.847187 kcal Electronic energy + Delta-G solvation = -19566.957334 eV Core-core repulsion = 16501.500904 eV Total energy + Delta-G solvation = -3065.456430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13580 -40.18969 -37.78972 -37.01291 -34.85037 -33.58363 -31.45317 -30.75527 -28.41536 -27.53509 -27.25305 -23.66375 -23.48633 -22.18011 -19.98118 -18.89772 -18.51803 -17.83446 -17.35070 -17.02077 -16.92349 -16.25012 -15.95845 -15.82617 -14.78011 -14.71834 -14.36294 -14.11112 -13.94162 -13.48390 -13.30326 -13.10843 -12.93825 -12.92271 -12.75814 -12.61512 -12.55492 -12.31971 -12.16858 -12.09519 -11.40385 -11.17818 -10.71345 -10.49465 -9.76394 -9.49946 -9.29956 -8.14757 -6.31598 0.31445 0.39701 1.40289 1.41988 1.51697 1.84863 2.32165 2.47983 2.82124 3.13028 3.27939 3.71049 3.94943 3.99677 4.20982 4.34585 4.39278 4.52497 4.59323 4.67787 4.73593 4.82503 4.89120 4.99841 5.04705 5.07293 5.10686 5.45201 5.47023 5.47244 5.62626 5.64147 5.68460 5.95144 6.05259 6.16848 6.76990 6.87011 6.88492 7.33487 7.52041 8.89478 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026796 B = 0.004651 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.665568 B = 6018.708648 C = 6426.275858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.004 0.996 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.260 1.260 12 N -0.603 5.603 13 C 0.080 3.920 14 C 0.494 3.506 15 O -0.602 6.602 16 C -0.090 4.090 17 C -0.058 4.058 18 C -0.128 4.128 19 C -0.104 4.104 20 C -0.156 4.156 21 C 0.093 3.907 22 O -0.512 6.512 23 C -0.154 4.154 24 H 0.065 0.935 25 H 0.020 0.980 26 H 0.050 0.950 27 H 0.264 0.736 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.409 0.591 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 -6.742 -17.828 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.022 0.978 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.184 1.184 12 N -0.333 5.333 13 C -0.062 4.062 14 C 0.283 3.717 15 O -0.484 6.484 16 C -0.129 4.129 17 C -0.058 4.058 18 C -0.146 4.146 19 C -0.122 4.122 20 C -0.174 4.174 21 C 0.049 3.951 22 O -0.325 6.325 23 C -0.172 4.172 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.155 0.845 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.268 0.732 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.357 -5.637 -17.180 18.858 hybrid contribution 0.427 -0.316 1.083 1.207 sum 5.785 -5.953 -16.096 18.111 Atomic orbital electron populations 1.21865 0.97075 1.00189 0.99893 1.18510 0.91690 0.92083 0.81952 0.97773 1.21592 1.31794 1.13007 0.91214 0.92150 1.25754 0.95095 0.95670 1.02094 1.70023 1.37388 1.23976 1.24387 0.85460 0.77706 0.79287 0.78584 1.21039 1.20484 1.18377 1.48258 1.49194 1.13531 1.22352 1.21861 1.01509 0.80169 1.02619 1.21289 0.78259 0.86770 0.85346 1.90654 1.59786 1.19832 1.78161 1.20766 1.01495 0.97937 0.92698 1.19424 0.93069 0.97635 0.95690 1.21316 1.00732 0.96440 0.96109 1.21327 0.93251 0.97872 0.99732 1.21643 0.96277 1.00942 0.98541 1.18575 0.84092 0.96569 0.95874 1.84800 1.14516 1.64735 1.68424 1.21410 0.94533 1.00574 1.00698 0.91595 0.96064 0.93135 0.92685 0.92684 0.91198 0.88104 0.84722 0.86111 0.84532 0.82829 0.83593 0.73244 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.95 71.98 0.64 -5.77 16 2 C 0.26 13.78 2.63 44.24 0.12 13.90 16 3 H 0.00 0.27 6.90 -2.39 -0.02 0.26 16 4 C -0.54 -29.70 8.37 25.60 0.21 -29.49 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.99 11.32 21.45 0.24 -53.75 16 8 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 12 N -0.60 -25.37 2.75 -826.80 -2.28 -27.64 16 13 C 0.08 2.41 9.48 127.77 1.21 3.62 16 14 C 0.49 20.39 7.67 87.66 0.67 21.06 16 15 O -0.60 -31.68 15.36 -3.05 -0.05 -31.72 16 16 C -0.09 -2.43 4.38 29.10 0.13 -2.30 16 17 C -0.06 -1.66 4.37 -19.88 -0.09 -1.75 16 18 C -0.13 -3.29 9.70 22.28 0.22 -3.08 16 19 C -0.10 -2.35 10.04 22.25 0.22 -2.12 16 20 C -0.16 -3.66 9.99 22.37 0.22 -3.43 16 21 C 0.09 2.51 6.70 22.51 0.15 2.66 16 22 O -0.51 -12.17 13.50 -92.48 -1.25 -13.42 16 23 C -0.15 -4.55 9.64 22.36 0.22 -4.33 16 24 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 25 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.05 2.20 6.66 -2.39 -0.02 2.18 16 27 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 2.14 6.43 -2.39 -0.02 2.13 16 30 H 0.10 2.03 6.44 -2.39 -0.02 2.01 16 31 H 0.13 2.62 7.34 -2.39 -0.02 2.60 16 32 H 0.12 2.70 8.05 -2.39 -0.02 2.68 16 33 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.41 4.90 9.06 -74.05 -0.67 4.23 16 37 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -77.53 312.45 3.48 -74.05 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.41 Total: 16.64 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 4.38 Total: -9.84 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.03 Total: -81.39 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.30 Total: -45.15 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -77.53 3.48 -74.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.802 kcal (2) G-P(sol) polarization free energy of solvation -77.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds