Wall clock time and date at job start Mon Mar 30 2020 21:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47070 * 2 1 4 4 O 1.42900 * 109.47122 * 300.00084 * 3 2 1 5 5 C 1.52994 * 109.47499 * 239.99651 * 2 1 3 6 6 O 1.42898 * 109.47382 * 179.97438 * 5 2 1 7 7 C 1.53002 * 109.47077 * 119.99415 * 2 1 3 8 8 N 1.46499 * 109.46863 * 60.00332 * 7 2 1 9 9 C 1.39685 * 120.00341 * 180.02562 * 8 7 2 10 10 C 1.39337 * 119.94932 * 359.97438 * 9 8 7 11 11 C 1.38478 * 120.42823 * 180.02562 * 10 9 8 12 12 C 1.37688 * 120.32117 * 359.97438 * 11 10 9 13 13 C 1.40752 * 119.89434 * 0.03305 * 12 11 10 14 14 C 1.41411 * 120.20601 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00317 * 24.35956 * 14 13 12 16 16 C 1.39935 * 119.99624 * 204.36087 * 14 13 12 17 17 N 1.30827 * 120.00201 * 17.84631 * 16 14 13 18 18 Si 1.86796 * 119.99610 * 197.84653 * 16 14 13 19 19 H 1.48501 * 109.47546 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47184 * 119.99998 * 18 16 14 21 21 H 1.48498 * 109.47199 * 240.00043 * 18 16 14 22 22 C 1.38275 * 119.95691 * 179.97438 * 9 8 7 23 23 H 1.09004 * 109.47465 * 300.00590 * 1 2 3 24 24 H 1.08996 * 109.46893 * 60.00117 * 1 2 3 25 25 H 1.08995 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47458 * 59.99406 * 3 2 1 27 27 H 1.09000 * 109.47695 * 179.97438 * 3 2 1 28 28 H 0.96700 * 114.00436 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.46988 * 300.00494 * 5 2 1 30 30 H 1.09005 * 109.46975 * 60.00106 * 5 2 1 31 31 H 0.96697 * 114.00360 * 179.97438 * 6 5 2 32 32 H 1.09002 * 109.47151 * 300.00807 * 7 2 1 33 33 H 1.09002 * 109.47344 * 180.02562 * 7 2 1 34 34 H 0.97003 * 120.00136 * 359.97438 * 8 7 2 35 35 H 1.07999 * 119.78413 * 0.02562 * 10 9 8 36 36 H 1.07997 * 119.84142 * 179.97438 * 11 10 9 37 37 H 1.07997 * 120.05363 * 179.97438 * 12 11 10 38 38 H 0.97003 * 119.99955 * 179.97438 * 17 16 14 39 39 H 1.08008 * 120.15896 * 359.70358 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5636 2.1161 -1.1668 5 6 2.0401 -0.7213 -1.2491 6 8 3.4691 -0.7207 -1.2494 7 6 2.0400 -0.7211 1.2493 8 7 1.5517 -2.1023 1.2494 9 6 1.8886 -2.9623 2.2973 10 6 2.6897 -2.5055 3.3419 11 6 3.0302 -3.3496 4.3854 12 6 2.5799 -4.6507 4.4023 13 6 1.7701 -5.1264 3.3540 14 6 1.3044 -6.4616 3.3644 15 1 1.2155 -6.9952 4.2991 16 6 0.9589 -7.0914 2.1635 17 7 1.3798 -6.6042 1.0246 18 14 -0.1035 -8.6276 2.1867 19 1 -0.4451 -8.9723 3.5902 20 1 -1.3508 -8.3785 1.4201 21 1 0.6411 -9.7538 1.5682 22 6 1.4268 -4.2656 2.2966 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.8493 3.0376 -1.2332 29 1 1.6767 -1.7489 -1.2491 30 1 1.6768 -0.2075 -2.1392 31 1 3.8624 -1.1628 -2.0142 32 1 1.6766 -0.2073 2.1393 33 1 3.1300 -0.7208 1.2496 34 1 0.9938 -2.4196 0.5220 35 1 3.0474 -1.4864 3.3375 36 1 3.6520 -2.9857 5.1900 37 1 2.8485 -5.3054 5.2181 38 1 1.1406 -7.0410 0.1922 39 1 0.8018 -4.6195 1.4899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313454607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:25:10 Heat of formation + Delta-G solvation = -87.954687 kcal Electronic energy + Delta-G solvation = -20239.142806 eV Core-core repulsion = 17145.936603 eV Total energy + Delta-G solvation = -3093.206203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.10407 -37.49380 -36.16252 -35.16323 -33.58899 -32.38901 -29.38059 -28.01693 -26.76684 -25.85618 -25.12841 -24.27420 -21.00154 -19.91081 -18.78123 -17.57411 -17.26102 -17.08662 -15.91204 -15.36200 -14.97303 -14.79335 -14.53825 -14.14461 -13.80348 -13.49256 -12.89215 -12.77312 -12.49415 -12.40835 -12.17850 -12.05591 -11.68806 -11.38949 -11.02968 -10.96436 -10.88778 -10.52893 -10.43311 -10.24947 -10.04460 -9.78116 -9.57735 -9.38383 -9.18660 -8.68083 -7.25470 -6.68634 -6.08718 -4.26393 2.89203 3.12303 3.18225 3.28579 3.38710 3.89252 4.01094 4.41486 4.64240 4.76222 4.79648 4.80780 5.17063 5.36822 5.48611 5.61486 5.68222 5.76880 5.86312 5.92585 6.05060 6.19633 6.21856 6.33252 6.41206 6.65750 6.93671 7.16801 7.18843 7.42851 7.49285 7.51412 7.73435 7.87186 8.02192 8.16681 8.22754 8.54499 8.76587 8.89587 9.06466 9.17732 10.30020 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.004810 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.814526 B = 5820.069569 C = 6448.471326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 C 0.092 3.908 4 O -0.571 6.571 5 C 0.092 3.908 6 O -0.568 6.568 7 C 0.152 3.848 8 N -0.755 5.755 9 C 0.219 3.781 10 C -0.297 4.297 11 C -0.066 4.066 12 C -0.258 4.258 13 C 0.139 3.861 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.794 5.794 18 Si 0.903 3.097 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.232 4.232 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.376 0.624 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.377 0.623 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.387 0.613 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.276 0.724 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 12.377 -6.047 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 C 0.014 3.986 4 O -0.376 6.376 5 C 0.014 3.986 6 O -0.373 6.373 7 C 0.027 3.973 8 N -0.390 5.390 9 C 0.120 3.880 10 C -0.320 4.320 11 C -0.085 4.085 12 C -0.279 4.279 13 C 0.136 3.864 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.419 5.419 18 Si 0.727 3.273 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.202 1.202 22 C -0.256 4.256 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.223 0.777 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.223 0.777 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.221 0.779 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.893 12.228 -5.774 13.552 hybrid contribution -0.250 -0.609 -0.773 1.015 sum -1.143 11.619 -6.546 13.385 Atomic orbital electron populations 1.21726 0.93048 1.02301 1.02334 1.20811 0.96474 0.93888 0.95647 1.22024 0.98026 0.91659 0.86932 1.86422 1.77534 1.28793 1.44855 1.22062 0.81101 0.98654 0.96791 1.86426 1.19674 1.81407 1.49768 1.20867 0.98597 0.83518 0.94352 1.44353 1.59348 1.09563 1.25689 1.17623 0.93859 0.89601 0.86947 1.19886 1.13478 0.99162 0.99502 1.20281 0.98068 0.94014 0.96168 1.20852 1.08128 0.95861 1.03011 1.17315 0.87101 0.92279 0.89749 1.19580 1.38895 0.97485 0.93566 0.90600 1.25863 0.94206 0.98720 0.95092 1.69886 1.34958 1.38345 0.98761 0.86362 0.80187 0.81190 0.79528 1.18466 1.19886 1.20160 1.20697 1.09877 0.90795 1.04210 0.92078 0.91895 0.92145 0.93683 0.92573 0.77746 0.93478 0.93267 0.77687 0.93521 0.92308 0.77886 0.89721 0.89697 0.89453 0.91358 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.16 37.16 0.30 -1.43 16 2 C -0.07 -0.91 0.44 -154.51 -0.07 -0.98 16 3 C 0.09 1.06 5.77 37.16 0.21 1.28 16 4 O -0.57 -6.07 12.31 -35.23 -0.43 -6.51 16 5 C 0.09 1.24 5.59 37.15 0.21 1.45 16 6 O -0.57 -7.86 12.31 -35.23 -0.43 -8.29 16 7 C 0.15 2.50 3.65 -4.04 -0.01 2.48 16 8 N -0.75 -14.71 5.13 -58.68 -0.30 -15.01 16 9 C 0.22 5.22 6.64 -83.86 -0.56 4.66 16 10 C -0.30 -6.98 9.32 -39.08 -0.36 -7.34 16 11 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 12 C -0.26 -6.67 9.79 -38.83 -0.38 -7.05 16 13 C 0.14 3.84 5.57 -106.85 -0.60 3.24 16 14 C -0.47 -12.76 9.05 -37.74 -0.34 -13.10 16 15 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 16 C 0.08 2.01 5.14 -17.34 -0.09 1.93 16 17 N -0.79 -20.95 10.95 55.55 0.61 -20.34 16 18 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 19 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 C -0.23 -6.17 8.53 -38.68 -0.33 -6.50 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 25 H 0.06 0.80 6.86 -51.93 -0.36 0.45 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 28 H 0.38 2.29 9.12 45.56 0.42 2.70 16 29 H 0.05 0.67 6.86 -51.93 -0.36 0.32 16 30 H 0.05 0.63 7.68 -51.93 -0.40 0.23 16 31 H 0.38 3.73 9.12 45.56 0.42 4.14 16 32 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 33 H 0.06 1.06 7.48 -51.93 -0.39 0.67 16 34 H 0.39 7.22 6.17 -40.82 -0.25 6.97 16 35 H 0.08 1.81 6.70 -52.49 -0.35 1.46 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.12 3.15 6.16 -52.48 -0.32 2.83 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -31.02 317.37 -7.27 -38.29 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -4.05 Total: 16.35 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -2.41 Total: -23.34 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.31 Total: -35.35 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.87 Total: -14.80 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.02 -7.27 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313454607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.665 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds