Wall clock time and date at job start Mon Mar 30 2020 21:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00285 * 2 1 4 4 H 1.48499 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47207 * 300.00643 * 3 2 1 6 6 H 1.48500 * 109.46839 * 60.00286 * 3 2 1 7 7 C 1.37882 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99903 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00074 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47272 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00353 * 89.99794 * 10 9 7 12 12 O 1.21285 * 119.99858 * 185.93979 * 11 10 9 13 13 C 1.50695 * 120.00010 * 5.93440 * 11 10 9 14 14 C 1.52998 * 109.47402 * 174.97461 * 13 11 10 15 15 H 1.09009 * 109.53801 * 55.10944 * 14 13 11 16 16 C 1.53092 * 109.50923 * 175.21679 * 14 13 11 17 17 N 1.47016 * 109.26234 * 176.78640 * 16 14 13 18 18 C 1.47020 * 110.74707 * 301.38853 * 17 16 14 19 19 C 1.53093 * 109.25946 * 58.61177 * 18 17 16 20 20 O 1.43007 * 109.26154 * 303.14837 * 19 18 17 21 21 C 1.46504 * 119.99686 * 270.00212 * 10 9 7 22 22 C 1.53000 * 117.49855 * 196.47000 * 21 10 9 23 23 C 1.52993 * 117.50107 * 127.81251 * 21 10 9 24 24 H 0.97003 * 119.99859 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47643 * 59.99848 * 9 7 2 26 26 H 1.09004 * 109.47032 * 300.00464 * 9 7 2 27 27 H 1.09000 * 109.47370 * 54.97359 * 13 11 10 28 28 H 1.09005 * 109.47135 * 294.97740 * 13 11 10 29 29 H 1.09003 * 109.50813 * 56.85107 * 16 14 13 30 30 H 1.09000 * 109.54549 * 296.73991 * 16 14 13 31 31 H 1.00897 * 110.99958 * 65.15532 * 17 16 14 32 32 H 1.08995 * 109.50278 * 298.67440 * 18 17 16 33 33 H 1.09006 * 109.53998 * 178.57339 * 18 17 16 34 34 H 1.09008 * 109.50253 * 183.21171 * 19 18 17 35 35 H 1.08998 * 109.50279 * 63.08955 * 19 18 17 36 36 H 1.08995 * 115.55023 * 342.13594 * 21 10 9 37 37 H 1.09001 * 117.49863 * 359.97438 * 22 21 10 38 38 H 1.09002 * 117.50024 * 145.01834 * 22 21 10 39 39 H 1.09002 * 117.50360 * 214.98045 * 23 21 10 40 40 H 1.09004 * 117.50214 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.6408 -4.1250 1.1666 12 8 3.5083 -4.9726 1.1693 13 6 2.0526 -3.6446 2.4682 14 6 2.6283 -4.4673 3.6226 15 1 3.7171 -4.4202 3.5964 16 6 2.1241 -3.9035 4.9535 17 7 2.6176 -4.7438 6.0543 18 6 2.1657 -6.1333 5.8918 19 6 2.6696 -6.6747 4.5514 20 8 2.2061 -5.8279 3.4963 21 6 2.6788 -4.1695 -1.2693 22 6 3.3482 -5.5447 -1.2305 23 6 4.1914 -4.2890 -1.4652 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5568 -0.8902 26 1 0.6245 -2.5570 0.8897 27 1 0.9693 -3.7624 2.4429 28 1 2.3004 -2.5929 2.6127 29 1 1.0340 -3.9009 4.9582 30 1 2.4910 -2.8850 5.0805 31 1 3.6232 -4.6963 6.1226 32 1 1.0764 -6.1663 5.9115 33 1 2.5630 -6.7432 6.7033 34 1 2.2892 -7.6852 4.4009 35 1 3.7594 -6.6918 4.5524 36 1 2.0755 -3.9280 -2.1444 37 1 3.4348 -6.0351 -0.2609 38 1 3.1856 -6.2078 -2.0802 39 1 4.5834 -4.1264 -2.4692 40 1 4.8326 -3.9531 -0.6502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091309727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:30:53 Heat of formation + Delta-G solvation = -43.594320 kcal Electronic energy + Delta-G solvation = -21482.309253 eV Core-core repulsion = 18298.289271 eV Total energy + Delta-G solvation = -3184.019982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93945 -39.01190 -35.76922 -34.35585 -34.22392 -32.55021 -32.02170 -28.36559 -27.04457 -25.30984 -23.37461 -22.81259 -21.78733 -21.69216 -20.74386 -18.30017 -16.76047 -16.36764 -16.31808 -16.07414 -15.59986 -15.03470 -14.74267 -14.47009 -14.39021 -14.22792 -13.53861 -12.77588 -12.63079 -12.46707 -12.28934 -12.10713 -11.61502 -11.54161 -11.30252 -11.19604 -11.08508 -11.00417 -10.82680 -10.69821 -10.43541 -10.25136 -9.93214 -9.66894 -9.56125 -8.71862 -8.54327 -8.22888 -7.47356 -6.20098 -4.27802 3.19995 3.28760 3.31925 3.39125 3.81603 3.91175 4.14836 4.31248 4.60999 4.76866 5.02358 5.05604 5.12743 5.18210 5.25496 5.38084 5.41815 5.54529 5.62181 5.66374 5.71484 5.83279 5.88815 5.98378 6.14240 6.22691 6.28135 6.31571 6.59826 6.76246 6.81275 6.96009 7.15178 7.18628 7.35979 7.64011 7.76162 8.03718 8.35340 8.79128 9.06083 9.40437 10.86188 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.006388 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.532821 B = 4382.068012 C = 5645.058590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.238 3.762 10 N -0.571 5.571 11 C 0.523 3.477 12 O -0.559 6.559 13 C -0.126 4.126 14 C 0.072 3.928 15 H 0.063 0.937 16 C 0.024 3.976 17 N -0.684 5.684 18 C 0.019 3.981 19 C 0.025 3.975 20 O -0.364 6.364 21 C 0.090 3.910 22 C -0.203 4.203 23 C -0.189 4.189 24 H 0.265 0.735 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.339 0.661 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -9.015 7.117 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.299 5.299 11 C 0.312 3.688 12 O -0.441 6.441 13 C -0.166 4.166 14 C 0.013 3.987 15 H 0.081 0.919 16 C -0.106 4.106 17 N -0.312 5.312 18 C -0.111 4.111 19 C -0.054 4.054 20 O -0.282 6.282 21 C -0.015 4.015 22 C -0.240 4.240 23 C -0.227 4.227 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.156 0.844 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.129 -9.181 7.413 12.208 hybrid contribution 1.068 0.947 -0.747 1.611 sum 4.197 -8.234 6.666 11.395 Atomic orbital electron populations 1.69933 1.05992 1.27230 1.49845 1.24944 0.94846 0.99276 0.94765 0.86465 0.80149 0.83245 0.77788 1.19680 1.20834 1.20783 1.21540 0.93683 0.90381 1.51836 0.92014 1.19467 0.87430 0.82442 0.98813 1.47642 1.45011 1.34106 1.03182 1.20287 0.82020 0.81095 0.85413 1.90438 1.32393 1.33928 1.87295 1.21641 1.02527 1.01048 0.91433 1.22548 0.98589 0.82676 0.94925 0.91899 1.22745 1.01980 0.97528 0.88332 1.60919 1.16834 1.08948 1.44479 1.22691 1.02005 0.89656 0.96739 1.23178 0.98505 0.95207 0.88514 1.88137 1.75101 1.18810 1.46162 1.21468 0.93844 0.97843 0.88376 1.23801 1.04037 0.91409 1.04769 1.23101 0.95132 1.02870 1.01645 0.92543 0.94648 0.94101 0.88439 0.86515 0.89675 0.89258 0.84353 0.89991 0.89999 0.88841 0.93486 0.86150 0.84762 0.90364 0.89641 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -13.83 9.39 -34.44 -0.32 -14.15 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.24 5.64 5.10 -5.20 -0.03 5.61 16 10 N -0.57 -12.28 2.82 -167.48 -0.47 -12.76 16 11 C 0.52 10.87 7.31 -10.99 -0.08 10.79 16 12 O -0.56 -12.22 11.25 -6.01 -0.07 -12.28 16 13 C -0.13 -2.25 3.96 -27.89 -0.11 -2.36 16 14 C 0.07 1.13 2.35 -26.68 -0.06 1.07 16 15 H 0.06 1.04 7.89 -51.92 -0.41 0.63 16 16 C 0.02 0.31 6.05 -3.71 -0.02 0.29 16 17 N -0.68 -7.98 6.93 -113.49 -0.79 -8.77 16 18 C 0.02 0.20 6.76 -3.71 -0.03 0.18 16 19 C 0.02 0.31 7.00 37.21 0.26 0.57 16 20 O -0.36 -6.02 9.82 -46.79 -0.46 -6.48 16 21 C 0.09 1.77 6.62 -67.93 -0.45 1.32 16 22 C -0.20 -3.66 9.63 -26.70 -0.26 -3.92 16 23 C -0.19 -3.48 9.88 -26.70 -0.26 -3.75 16 24 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.04 0.88 8.03 -51.93 -0.42 0.47 16 26 H 0.04 0.98 6.31 -51.93 -0.33 0.65 16 27 H 0.10 1.73 7.35 -51.93 -0.38 1.34 16 28 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.34 3.54 8.89 -39.29 -0.35 3.20 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 2.22 8.09 -51.93 -0.42 1.80 16 37 H 0.13 2.74 5.22 -52.10 -0.27 2.46 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.09 1.87 7.59 -51.93 -0.39 1.48 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -29.05 323.25 -8.98 -38.03 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.32 Total: 8.33 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.46 Total: -2.76 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.52 Total: -45.07 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.53 Total: -18.77 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.05 -8.98 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091309727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.562 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds