Wall clock time and date at job start Mon Mar 30 2020 21:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00632 * 2 1 4 4 C 1.52999 * 109.47295 * 124.99906 * 3 2 1 5 5 H 1.08998 * 109.47160 * 55.00354 * 4 3 2 6 6 C 1.53005 * 109.47135 * 175.00191 * 4 3 2 7 7 O 1.42900 * 109.46835 * 54.99975 * 6 4 3 8 8 N 1.46501 * 109.47041 * 295.00175 * 4 3 2 9 9 C 1.34775 * 119.99798 * 154.99998 * 8 4 3 10 10 O 1.21585 * 120.00266 * 359.97438 * 9 8 4 11 11 N 1.34782 * 119.99532 * 179.97438 * 9 8 4 12 12 C 1.46499 * 119.99414 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46871 * 184.79336 * 12 11 9 14 14 C 1.50697 * 115.55322 * 294.82178 * 13 12 11 15 15 H 1.07996 * 120.00132 * 99.47554 * 14 13 12 16 16 C 1.37879 * 119.99948 * 279.20924 * 14 13 12 17 17 N 1.31513 * 119.99686 * 355.31737 * 16 14 13 18 18 Si 1.86797 * 120.00007 * 175.32661 * 16 14 13 19 19 H 1.48495 * 109.47524 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47456 * 119.99723 * 18 16 14 21 21 H 1.48503 * 109.46858 * 239.99145 * 18 16 14 22 22 C 1.53002 * 117.51952 * 80.52342 * 13 12 11 23 23 C 1.52995 * 60.00245 * 107.48140 * 22 13 12 24 24 H 1.08010 * 119.99355 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00766 * 179.97438 * 1 2 3 26 26 H 1.08010 * 119.99355 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47054 * 5.00113 * 3 2 1 28 28 H 1.09001 * 109.47340 * 244.99990 * 3 2 1 29 29 H 1.08998 * 109.47219 * 174.99934 * 6 4 3 30 30 H 1.08998 * 109.46760 * 294.99976 * 6 4 3 31 31 H 0.96702 * 113.99730 * 180.02562 * 7 6 4 32 32 H 0.97001 * 120.00149 * 334.99767 * 8 4 3 33 33 H 0.96990 * 120.00272 * 0.02562 * 11 9 8 34 34 H 1.08998 * 109.47436 * 64.79683 * 12 11 9 35 35 H 1.08999 * 109.47678 * 304.79417 * 12 11 9 36 36 H 0.97002 * 120.00155 * 185.00754 * 17 16 14 37 37 H 1.08997 * 117.49823 * 214.97510 * 22 13 12 38 38 H 1.09007 * 117.49782 * 359.97438 * 22 13 12 39 39 H 1.09003 * 117.49823 * 252.51352 * 23 22 13 40 40 H 1.08996 * 117.52003 * 107.48186 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.6827 0.4571 1.1403 6 6 3.8878 2.6014 1.1110 7 8 3.0344 3.7459 1.0477 8 7 2.2786 1.3222 2.4362 9 6 2.8474 0.8473 3.5620 10 8 3.9882 0.4274 3.5364 11 7 2.1516 0.8380 4.7162 12 6 2.7700 0.3223 5.9401 13 6 1.7370 0.3130 7.0686 14 6 1.2394 1.6667 7.5056 15 1 0.2909 2.0358 7.1445 16 6 1.9927 2.4317 8.3708 17 7 3.0994 1.9434 8.8869 18 14 1.4410 4.1614 8.8101 19 1 0.1733 4.4717 8.1017 20 1 1.2248 4.2548 10.2763 21 1 2.4868 5.1333 8.4012 22 6 0.7449 -0.8511 7.1094 23 6 1.8718 -0.7700 8.1410 24 1 -0.5399 0.9355 -0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8499 -0.9355 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4024 -0.9314 29 1 4.5171 2.6660 1.9986 30 1 4.5166 2.5673 0.2214 31 1 3.5082 4.5876 1.0005 32 1 1.3684 1.6569 2.4565 33 1 1.2414 1.1726 4.7366 34 1 3.6083 0.9602 6.2202 35 1 3.1278 -0.6926 5.7667 36 1 3.5907 2.4522 9.5507 37 1 -0.2675 -0.6378 7.4521 38 1 0.8278 -1.6105 6.3317 39 1 2.6964 -1.4761 8.0422 40 1 1.6012 -0.5032 9.1625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355750428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:29:59 Heat of formation + Delta-G solvation = -45.181308 kcal Electronic energy + Delta-G solvation = -20799.694481 eV Core-core repulsion = 17615.605681 eV Total energy + Delta-G solvation = -3184.088799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61321 -37.57523 -36.55393 -35.43285 -33.28916 -33.05408 -31.95317 -29.81508 -26.16563 -26.02563 -24.99645 -21.50989 -21.05783 -20.21064 -19.85838 -19.33552 -17.77924 -17.23556 -16.48829 -15.86533 -15.09781 -14.81096 -14.63691 -14.38146 -14.07074 -13.97257 -13.62229 -13.32672 -12.79167 -12.64021 -12.43697 -12.10733 -11.68911 -11.52903 -11.14236 -10.99132 -10.94840 -10.89259 -10.49863 -10.22375 -10.03721 -9.67902 -9.46386 -9.36314 -8.99143 -8.75989 -8.47979 -8.20125 -7.91771 -6.05350 -4.14166 2.22313 3.26195 3.28214 3.35312 3.37461 3.83592 4.31934 4.37080 4.66593 4.85716 4.95504 5.12154 5.23769 5.34241 5.36604 5.40953 5.42288 5.70861 5.75632 5.88352 6.05020 6.08284 6.37379 6.52001 6.56468 6.63686 6.67427 6.73225 6.89893 6.91704 7.13373 7.39387 7.46259 7.49184 7.59242 7.68912 7.84450 8.37228 8.74046 8.87411 9.27454 9.52640 11.02347 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.005104 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.797949 B = 5484.479049 C = 6108.906539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C -0.097 4.097 4 C 0.175 3.825 5 H 0.098 0.902 6 C 0.061 3.939 7 O -0.569 6.569 8 N -0.739 5.739 9 C 0.699 3.301 10 O -0.610 6.610 11 N -0.720 5.720 12 C 0.183 3.817 13 C 0.026 3.974 14 C -0.497 4.497 15 H 0.060 0.940 16 C 0.073 3.927 17 N -0.875 5.875 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.210 4.210 23 C -0.147 4.147 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.376 0.624 32 H 0.395 0.605 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -0.056 -16.123 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.167 4.167 3 C -0.134 4.134 4 C 0.068 3.932 5 H 0.116 0.884 6 C -0.019 4.019 7 O -0.374 6.374 8 N -0.395 5.395 9 C 0.399 3.601 10 O -0.490 6.490 11 N -0.372 5.372 12 C 0.060 3.940 13 C 0.025 3.975 14 C -0.535 4.535 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.511 5.511 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.247 4.247 23 C -0.185 4.185 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.222 0.778 32 H 0.229 0.771 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.552 -0.853 -15.996 16.093 hybrid contribution -0.539 1.652 0.460 1.797 sum -2.091 0.799 -15.536 15.697 Atomic orbital electron populations 1.23820 0.95913 1.01739 1.01701 1.22932 0.96112 0.98313 0.99300 1.20960 0.98848 0.96016 0.97594 1.20726 0.92980 0.96499 0.82968 0.88412 1.22735 0.92583 0.86377 1.00173 1.86452 1.37008 1.16432 1.97479 1.45017 1.17864 1.68993 1.07591 1.16066 0.84696 0.78834 0.80549 1.90848 1.17549 1.55125 1.85509 1.45141 1.17668 1.66798 1.07628 1.20800 0.95909 0.96086 0.81236 1.19064 0.94345 0.90140 0.93926 1.20390 1.04922 0.99357 1.28842 0.92197 1.24981 0.94500 0.97841 0.95753 1.69996 1.15770 1.37851 1.27473 0.86580 0.78650 0.84929 0.78082 1.19735 1.21062 1.21007 1.22972 0.95492 1.03344 1.02887 1.22487 0.97999 1.02204 0.95809 0.88620 0.88688 0.87510 0.90078 0.89881 0.92628 0.93308 0.77801 0.77117 0.77010 0.91615 0.94566 0.92960 0.90467 0.91681 0.91775 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 14.32 29.01 0.42 -1.47 16 2 C -0.15 -1.51 9.24 -36.03 -0.33 -1.85 16 3 C -0.10 -0.97 4.92 -27.89 -0.14 -1.11 16 4 C 0.17 2.22 2.36 -67.93 -0.16 2.06 16 5 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 6 C 0.06 0.73 6.85 37.16 0.25 0.98 16 7 O -0.57 -6.52 12.83 -35.23 -0.45 -6.97 16 8 N -0.74 -11.08 4.74 -58.67 -0.28 -11.35 16 9 C 0.70 13.67 8.53 -86.91 -0.74 12.93 16 10 O -0.61 -14.02 16.00 5.29 0.08 -13.93 16 11 N -0.72 -14.56 5.48 -65.23 -0.36 -14.92 16 12 C 0.18 4.29 5.50 -4.04 -0.02 4.27 16 13 C 0.03 0.62 1.40 -155.66 -0.22 0.40 16 14 C -0.50 -12.94 8.57 -34.44 -0.30 -13.23 16 15 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 16 C 0.07 1.96 5.44 -17.82 -0.10 1.86 16 17 N -0.87 -24.51 12.85 55.43 0.71 -23.80 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.21 -4.44 9.95 -26.73 -0.27 -4.71 16 23 C -0.15 -3.40 9.39 -26.73 -0.25 -3.65 16 24 H 0.10 0.86 7.84 -52.48 -0.41 0.45 16 25 H 0.09 0.85 8.06 -52.49 -0.42 0.43 16 26 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 27 H 0.08 0.85 7.38 -51.93 -0.38 0.46 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.38 2.84 9.12 45.56 0.42 3.26 16 32 H 0.40 5.34 8.62 -40.82 -0.35 4.99 16 33 H 0.40 7.42 8.34 -40.82 -0.34 7.08 16 34 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -31.04 343.60 -7.64 -38.69 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.66 Total: 14.85 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.85 Total: -3.51 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.08 Total: -50.08 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.37 Total: -20.90 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.04 -7.64 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355750428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.494 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds