Wall clock time and date at job start Mon Mar 30 2020 21:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00632 * 2 1 4 4 C 1.52999 * 109.47295 * 124.99906 * 3 2 1 5 5 H 1.08998 * 109.47160 * 55.00354 * 4 3 2 6 6 C 1.53005 * 109.47135 * 175.00191 * 4 3 2 7 7 O 1.42900 * 109.46835 * 54.99975 * 6 4 3 8 8 N 1.46501 * 109.47041 * 295.00175 * 4 3 2 9 9 C 1.34775 * 119.99798 * 154.99998 * 8 4 3 10 10 O 1.21585 * 120.00266 * 359.97438 * 9 8 4 11 11 N 1.34782 * 119.99532 * 179.97438 * 9 8 4 12 12 C 1.46499 * 119.99414 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46871 * 184.79336 * 12 11 9 14 14 C 1.50697 * 115.55322 * 294.82178 * 13 12 11 15 15 H 1.07996 * 120.00132 * 99.47554 * 14 13 12 16 16 C 1.37879 * 119.99948 * 279.20924 * 14 13 12 17 17 N 1.31513 * 119.99686 * 355.31737 * 16 14 13 18 18 Si 1.86797 * 120.00007 * 175.32661 * 16 14 13 19 19 H 1.48495 * 109.47524 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47456 * 119.99723 * 18 16 14 21 21 H 1.48503 * 109.46858 * 239.99145 * 18 16 14 22 22 C 1.53002 * 117.51952 * 80.52342 * 13 12 11 23 23 C 1.52995 * 60.00245 * 107.48140 * 22 13 12 24 24 H 1.08010 * 119.99355 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00766 * 179.97438 * 1 2 3 26 26 H 1.08010 * 119.99355 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47054 * 5.00113 * 3 2 1 28 28 H 1.09001 * 109.47340 * 244.99990 * 3 2 1 29 29 H 1.08998 * 109.47219 * 174.99934 * 6 4 3 30 30 H 1.08998 * 109.46760 * 294.99976 * 6 4 3 31 31 H 0.96702 * 113.99730 * 180.02562 * 7 6 4 32 32 H 0.97001 * 120.00149 * 334.99767 * 8 4 3 33 33 H 0.96990 * 120.00272 * 0.02562 * 11 9 8 34 34 H 1.08998 * 109.47436 * 64.79683 * 12 11 9 35 35 H 1.08999 * 109.47678 * 304.79417 * 12 11 9 36 36 H 0.97002 * 120.00155 * 185.00754 * 17 16 14 37 37 H 1.08997 * 117.49823 * 214.97510 * 22 13 12 38 38 H 1.09007 * 117.49782 * 359.97438 * 22 13 12 39 39 H 1.09003 * 117.49823 * 252.51352 * 23 22 13 40 40 H 1.08996 * 117.52003 * 107.48186 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.6827 0.4571 1.1403 6 6 3.8878 2.6014 1.1110 7 8 3.0344 3.7459 1.0477 8 7 2.2786 1.3222 2.4362 9 6 2.8474 0.8473 3.5620 10 8 3.9882 0.4274 3.5364 11 7 2.1516 0.8380 4.7162 12 6 2.7700 0.3223 5.9401 13 6 1.7370 0.3130 7.0686 14 6 1.2394 1.6667 7.5056 15 1 0.2909 2.0358 7.1445 16 6 1.9927 2.4317 8.3708 17 7 3.0994 1.9434 8.8869 18 14 1.4410 4.1614 8.8101 19 1 0.1733 4.4717 8.1017 20 1 1.2248 4.2548 10.2763 21 1 2.4868 5.1333 8.4012 22 6 0.7449 -0.8511 7.1094 23 6 1.8718 -0.7700 8.1410 24 1 -0.5399 0.9355 -0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8499 -0.9355 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4024 -0.9314 29 1 4.5171 2.6660 1.9986 30 1 4.5166 2.5673 0.2214 31 1 3.5082 4.5876 1.0005 32 1 1.3684 1.6569 2.4565 33 1 1.2414 1.1726 4.7366 34 1 3.6083 0.9602 6.2202 35 1 3.1278 -0.6926 5.7667 36 1 3.5907 2.4522 9.5507 37 1 -0.2675 -0.6378 7.4521 38 1 0.8278 -1.6105 6.3317 39 1 2.6964 -1.4761 8.0422 40 1 1.6012 -0.5032 9.1625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355750428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:29:59 Heat of formation + Delta-G solvation = -68.121369 kcal Electronic energy + Delta-G solvation = -20800.689236 eV Core-core repulsion = 17615.605681 eV Total energy + Delta-G solvation = -3185.083555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07429 -38.90876 -38.13214 -36.36227 -34.92378 -34.25495 -33.94850 -30.92594 -27.96917 -26.96579 -26.86051 -23.01991 -22.54127 -21.53177 -21.19446 -20.74997 -19.24001 -18.27202 -18.09428 -17.31285 -16.69626 -16.40297 -16.10410 -15.69473 -15.31100 -15.28174 -14.87659 -14.77896 -14.40922 -13.83590 -13.70832 -13.45927 -13.30666 -12.94757 -12.89100 -12.82804 -12.32638 -12.03586 -12.01550 -11.76788 -11.44879 -11.23445 -10.93143 -10.90132 -10.45517 -10.27611 -10.14984 -10.00227 -9.54987 -8.08828 -6.22191 1.40763 1.44661 1.45929 1.53754 1.87595 2.28655 2.42819 3.19427 3.35254 3.44710 3.64288 3.82028 4.05487 4.25841 4.29221 4.42678 4.48953 4.56642 4.60127 4.67843 4.75659 4.77699 4.86007 5.00156 5.03943 5.09225 5.22270 5.28961 5.56423 5.61971 5.64624 5.75536 5.80657 5.81975 5.93816 6.20503 6.38259 6.85112 6.87809 7.27084 7.47260 7.72685 8.98931 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.005104 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.797949 B = 5484.479049 C = 6108.906539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.083 4.083 4 C 0.167 3.833 5 H 0.085 0.915 6 C 0.066 3.934 7 O -0.578 6.578 8 N -0.721 5.721 9 C 0.697 3.303 10 O -0.647 6.647 11 N -0.717 5.717 12 C 0.202 3.798 13 C 0.003 3.997 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.024 3.976 17 N -0.908 5.908 18 Si 0.949 3.051 19 H -0.261 1.261 20 H -0.283 1.283 21 H -0.290 1.290 22 C -0.176 4.176 23 C -0.157 4.157 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.022 0.978 30 H 0.080 0.920 31 H 0.393 0.607 32 H 0.405 0.595 33 H 0.405 0.595 34 H 0.022 0.978 35 H 0.033 0.967 36 H 0.259 0.741 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 0.482 -17.848 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.180 4.180 3 C -0.120 4.120 4 C 0.062 3.938 5 H 0.103 0.897 6 C -0.013 4.013 7 O -0.385 6.385 8 N -0.376 5.376 9 C 0.396 3.604 10 O -0.530 6.530 11 N -0.370 5.370 12 C 0.077 3.923 13 C 0.002 3.998 14 C -0.539 4.539 15 H 0.081 0.919 16 C -0.176 4.176 17 N -0.546 5.546 18 Si 0.776 3.224 19 H -0.185 1.185 20 H -0.209 1.209 21 H -0.216 1.216 22 C -0.213 4.213 23 C -0.195 4.195 24 H 0.122 0.878 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.040 0.960 30 H 0.098 0.902 31 H 0.242 0.758 32 H 0.241 0.759 33 H 0.240 0.760 34 H 0.041 0.959 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.219 -0.284 -17.766 18.058 hybrid contribution -0.045 1.477 0.932 1.747 sum -3.264 1.193 -16.834 17.189 Atomic orbital electron populations 1.23975 0.95802 1.02453 1.00582 1.22976 0.96433 0.98307 1.00330 1.20866 0.98263 0.95924 0.96944 1.20973 0.93564 0.96587 0.82722 0.89685 1.22598 0.92282 0.86335 1.00081 1.86401 1.37486 1.17215 1.97432 1.44934 1.18259 1.67399 1.07002 1.16212 0.84186 0.78726 0.81233 1.90820 1.19269 1.56774 1.86152 1.44935 1.17955 1.67070 1.07073 1.20341 0.94650 0.94913 0.82399 1.19087 0.95939 0.90266 0.94477 1.20682 1.04756 1.00255 1.28180 0.91912 1.25695 0.94676 1.01154 0.96101 1.70116 1.17000 1.39187 1.28288 0.85642 0.78348 0.80657 0.77796 1.18528 1.20901 1.21610 1.22956 0.94906 1.01661 1.01748 1.22419 0.99559 1.02428 0.95094 0.87834 0.88130 0.87838 0.89959 0.87782 0.96006 0.90168 0.75777 0.75946 0.75999 0.95940 0.94868 0.93242 0.89575 0.89499 0.91245 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 14.32 67.78 0.97 -2.27 16 2 C -0.16 -2.97 9.24 25.65 0.24 -2.74 16 3 C -0.08 -1.45 4.92 29.85 0.15 -1.30 16 4 C 0.17 4.02 2.36 44.99 0.11 4.12 16 5 H 0.09 2.30 7.58 -2.39 -0.02 2.28 16 6 C 0.07 1.50 6.85 71.98 0.49 1.99 16 7 O -0.58 -11.99 12.83 -148.98 -1.91 -13.90 16 8 N -0.72 -20.83 4.74 -457.80 -2.17 -23.00 16 9 C 0.70 27.18 8.53 179.05 1.53 28.71 16 10 O -0.65 -30.27 16.00 -3.98 -0.06 -30.33 16 11 N -0.72 -28.81 5.48 -478.54 -2.62 -31.44 16 12 C 0.20 9.58 5.50 86.38 0.48 10.05 16 13 C 0.00 0.15 1.40 -52.93 -0.07 0.07 16 14 C -0.50 -25.84 8.57 25.60 0.22 -25.62 16 15 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 16 C 0.02 1.30 5.44 84.66 0.46 1.76 16 17 N -0.91 -51.90 12.85 21.45 0.28 -51.62 16 18 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 C -0.18 -7.11 9.95 30.59 0.30 -6.80 16 23 C -0.16 -7.25 9.39 30.59 0.29 -6.96 16 24 H 0.10 1.58 7.84 -2.91 -0.02 1.56 16 25 H 0.10 1.57 8.06 -2.91 -0.02 1.55 16 26 H 0.10 1.96 8.06 -2.91 -0.02 1.94 16 27 H 0.08 1.47 7.38 -2.39 -0.02 1.45 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.39 5.09 9.12 -74.06 -0.68 4.42 16 32 H 0.41 10.20 8.62 -92.71 -0.80 9.40 16 33 H 0.40 14.71 8.34 -92.72 -0.77 13.94 16 34 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.03 1.57 8.09 -2.39 -0.02 1.55 16 36 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.33 16 38 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 39 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -66.92 343.60 -0.51 -67.43 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -1.20 Total: 37.16 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.15 Total: 1.02 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -4.52 Total: -106.06 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.97 Total: -44.23 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -66.92 -0.51 -67.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355750428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.690 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds