Wall clock time and date at job start Mon Mar 30 2020 21:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99879 * 2 1 4 4 C 1.53001 * 109.46717 * 125.00469 * 3 2 1 5 5 H 1.09004 * 109.47004 * 305.00082 * 4 3 2 6 6 C 1.52994 * 109.47183 * 185.00067 * 4 3 2 7 7 O 1.42896 * 109.47381 * 305.00118 * 6 4 3 8 8 N 1.46497 * 109.47407 * 65.00001 * 4 3 2 9 9 C 1.34776 * 120.00194 * 205.00247 * 8 4 3 10 10 O 1.21582 * 120.00274 * 359.97438 * 9 8 4 11 11 N 1.34782 * 120.00034 * 180.02562 * 9 8 4 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 H 1.07997 * 120.00084 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99739 * 359.97438 * 1 2 3 26 26 H 1.07992 * 120.00313 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47020 * 5.00808 * 3 2 1 28 28 H 1.08994 * 109.47272 * 245.00463 * 3 2 1 29 29 H 1.08999 * 109.47254 * 64.99889 * 6 4 3 30 30 H 1.09004 * 109.47497 * 184.99675 * 6 4 3 31 31 H 0.96699 * 114.00599 * 180.02562 * 7 6 4 32 32 H 0.97004 * 119.99607 * 24.99920 * 8 4 3 33 33 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 35 35 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 36 36 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 37 37 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 38 38 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 39 39 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 40 40 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1467 2.1060 6 6 3.7092 2.7044 1.2553 7 8 4.3283 2.9990 0.0016 8 7 4.0547 0.2969 1.0000 9 6 4.6913 -0.2172 2.0710 10 8 4.4197 0.1792 3.1878 11 7 5.6297 -1.1701 1.9039 12 6 6.3212 -1.7294 3.0680 13 6 7.4106 -2.6956 2.5985 14 6 6.9211 -3.9327 1.8908 15 1 6.8720 -3.9539 0.8120 16 6 6.5413 -5.0395 2.6200 17 7 6.6906 -5.0489 3.9266 18 14 5.8146 -6.5255 1.7521 19 1 6.7987 -7.0592 0.7765 20 1 5.4907 -7.5738 2.7529 21 1 4.5763 -6.1247 1.0373 22 6 8.7365 -2.0921 2.1309 23 6 8.6606 -2.8287 3.4707 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 2.9615 3.4653 1.4789 30 1 4.4651 2.6961 2.0407 31 1 4.7766 3.8554 -0.0243 32 1 4.2716 -0.0192 0.1090 33 1 5.8466 -1.4862 1.0129 34 1 5.6061 -2.2640 3.6933 35 1 6.7748 -0.9223 3.6435 36 1 6.4917 -5.8528 4.4316 37 1 9.2548 -2.5899 1.3113 38 1 8.8329 -1.0067 2.1582 39 1 8.7071 -2.2275 4.3787 40 1 9.1287 -3.8110 3.5328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355750435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:30:01 Heat of formation + Delta-G solvation = -44.984192 kcal Electronic energy + Delta-G solvation = -20710.225165 eV Core-core repulsion = 17526.144913 eV Total energy + Delta-G solvation = -3184.080252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.64569 -37.60524 -36.56863 -35.45347 -33.34837 -33.10087 -31.93540 -29.76720 -26.17919 -26.09897 -25.00065 -21.51390 -21.06443 -20.21856 -19.80002 -19.35793 -17.90496 -17.28736 -16.35300 -15.75919 -15.18105 -15.10813 -14.65746 -14.43972 -14.11394 -13.79238 -13.58466 -13.28435 -13.24343 -12.61061 -12.16423 -11.85085 -11.61301 -11.54191 -11.49080 -10.97616 -10.95557 -10.91665 -10.53156 -10.21052 -10.15163 -9.67704 -9.42891 -9.37488 -9.01282 -8.77657 -8.45915 -8.21077 -7.94580 -6.05180 -4.14787 2.23577 3.25112 3.27818 3.33856 3.35052 3.80493 4.26147 4.36453 4.65871 4.84489 4.99580 5.08406 5.22771 5.29175 5.36103 5.38451 5.42273 5.69206 5.73040 5.93808 6.03335 6.08069 6.37968 6.51046 6.59295 6.62548 6.69303 6.73912 6.86310 6.89589 7.14709 7.37100 7.44838 7.49688 7.53220 7.67269 7.83120 8.36739 8.71174 8.86273 9.24451 9.52030 11.02052 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.005119 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.142339 B = 5468.194679 C = 6500.035823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.095 4.095 4 C 0.174 3.826 5 H 0.099 0.901 6 C 0.062 3.938 7 O -0.569 6.569 8 N -0.741 5.741 9 C 0.698 3.302 10 O -0.609 6.609 11 N -0.720 5.720 12 C 0.183 3.817 13 C 0.024 3.976 14 C -0.499 4.499 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.875 5.875 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.210 4.210 23 C -0.142 4.142 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.375 0.625 32 H 0.396 0.604 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 12.947 -7.890 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.165 4.165 3 C -0.133 4.133 4 C 0.068 3.932 5 H 0.117 0.883 6 C -0.018 4.018 7 O -0.374 6.374 8 N -0.397 5.397 9 C 0.398 3.602 10 O -0.489 6.489 11 N -0.373 5.373 12 C 0.059 3.941 13 C 0.023 3.977 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.511 5.511 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.129 0.871 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.221 0.779 32 H 0.229 0.771 33 H 0.230 0.770 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.506 12.591 -6.784 16.152 hybrid contribution 0.070 -0.695 -0.951 1.180 sum -7.437 11.896 -7.734 16.020 Atomic orbital electron populations 1.23806 0.95915 1.01636 1.02328 1.23005 0.96022 0.98753 0.98769 1.20952 0.97565 0.95680 0.99096 1.20754 0.87750 0.85233 0.99450 0.88333 1.22730 0.96550 0.96527 0.85956 1.86456 1.74378 1.41800 1.34735 1.45050 1.42820 1.43207 1.08584 1.16073 0.79779 0.80038 0.84298 1.90852 1.69195 1.65554 1.23271 1.45150 1.40215 1.40220 1.11676 1.20831 0.94278 0.93578 0.85401 1.19052 0.84839 0.94555 0.99218 1.20298 1.44378 0.96678 0.92293 0.92333 1.24978 0.94964 0.98358 0.94745 1.69978 1.47348 1.28192 1.05574 0.86696 0.79799 0.82381 0.79308 1.20312 1.21286 1.20224 1.23006 1.05876 0.96857 0.99028 1.22461 1.04230 0.99855 0.91453 0.88614 0.88795 0.87081 0.90414 0.89594 0.93279 0.92715 0.77873 0.77073 0.76997 0.91797 0.94511 0.92837 0.90468 0.91762 0.91838 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 14.32 29.01 0.42 -1.60 16 2 C -0.15 -1.64 9.25 -36.02 -0.33 -1.97 16 3 C -0.10 -0.98 4.92 -27.88 -0.14 -1.12 16 4 C 0.17 2.21 2.36 -67.93 -0.16 2.05 16 5 H 0.10 1.42 7.58 -51.93 -0.39 1.03 16 6 C 0.06 0.70 6.85 37.15 0.25 0.95 16 7 O -0.57 -5.93 12.83 -35.23 -0.45 -6.38 16 8 N -0.74 -10.85 4.72 -58.68 -0.28 -11.13 16 9 C 0.70 13.46 8.53 -86.91 -0.74 12.72 16 10 O -0.61 -13.89 16.00 5.29 0.08 -13.81 16 11 N -0.72 -14.33 5.48 -65.23 -0.36 -14.69 16 12 C 0.18 4.23 5.50 -4.05 -0.02 4.21 16 13 C 0.02 0.57 1.47 -155.66 -0.23 0.34 16 14 C -0.50 -12.89 8.59 -34.44 -0.30 -13.19 16 15 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 16 C 0.07 1.96 5.43 -17.82 -0.10 1.87 16 17 N -0.87 -24.42 12.65 55.43 0.70 -23.72 16 18 Si 0.89 20.70 29.54 -169.99 -5.02 15.67 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 23 C -0.14 -3.29 9.14 -26.69 -0.24 -3.53 16 24 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 25 H 0.09 0.81 7.84 -52.49 -0.41 0.40 16 26 H 0.11 1.36 8.03 -52.49 -0.42 0.94 16 27 H 0.08 0.69 7.79 -51.93 -0.40 0.28 16 28 H 0.09 0.89 7.73 -51.93 -0.40 0.49 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.38 2.38 9.12 45.56 0.42 2.80 16 32 H 0.40 5.09 8.62 -40.82 -0.35 4.74 16 33 H 0.40 7.26 8.34 -40.82 -0.34 6.92 16 34 H 0.06 1.69 8.14 -51.93 -0.42 1.26 16 35 H 0.04 0.85 8.09 -51.92 -0.42 0.43 16 36 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -30.86 343.20 -7.66 -38.52 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.66 Total: 14.34 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.86 Total: -3.99 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.07 Total: -49.53 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.37 Total: -20.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.86 -7.66 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355750435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.464 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds