Wall clock time and date at job start Mon Mar 30 2020 21:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99879 * 2 1 4 4 C 1.53001 * 109.46717 * 125.00469 * 3 2 1 5 5 H 1.09004 * 109.47004 * 305.00082 * 4 3 2 6 6 C 1.52994 * 109.47183 * 185.00067 * 4 3 2 7 7 O 1.42896 * 109.47381 * 305.00118 * 6 4 3 8 8 N 1.46497 * 109.47407 * 65.00001 * 4 3 2 9 9 C 1.34776 * 120.00194 * 205.00247 * 8 4 3 10 10 O 1.21582 * 120.00274 * 359.97438 * 9 8 4 11 11 N 1.34782 * 120.00034 * 180.02562 * 9 8 4 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 H 1.07997 * 120.00084 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99739 * 359.97438 * 1 2 3 26 26 H 1.07992 * 120.00313 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47020 * 5.00808 * 3 2 1 28 28 H 1.08994 * 109.47272 * 245.00463 * 3 2 1 29 29 H 1.08999 * 109.47254 * 64.99889 * 6 4 3 30 30 H 1.09004 * 109.47497 * 184.99675 * 6 4 3 31 31 H 0.96699 * 114.00599 * 180.02562 * 7 6 4 32 32 H 0.97004 * 119.99607 * 24.99920 * 8 4 3 33 33 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 35 35 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 36 36 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 37 37 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 38 38 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 39 39 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 40 40 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1467 2.1060 6 6 3.7092 2.7044 1.2553 7 8 4.3283 2.9990 0.0016 8 7 4.0547 0.2969 1.0000 9 6 4.6913 -0.2172 2.0710 10 8 4.4197 0.1792 3.1878 11 7 5.6297 -1.1701 1.9039 12 6 6.3212 -1.7294 3.0680 13 6 7.4106 -2.6956 2.5985 14 6 6.9211 -3.9327 1.8908 15 1 6.8720 -3.9539 0.8120 16 6 6.5413 -5.0395 2.6200 17 7 6.6906 -5.0489 3.9266 18 14 5.8146 -6.5255 1.7521 19 1 6.7987 -7.0592 0.7765 20 1 5.4907 -7.5738 2.7529 21 1 4.5763 -6.1247 1.0373 22 6 8.7365 -2.0921 2.1309 23 6 8.6606 -2.8287 3.4707 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 2.9615 3.4653 1.4789 30 1 4.4651 2.6961 2.0407 31 1 4.7766 3.8554 -0.0243 32 1 4.2716 -0.0192 0.1090 33 1 5.8466 -1.4862 1.0129 34 1 5.6061 -2.2640 3.6933 35 1 6.7748 -0.9223 3.6435 36 1 6.4917 -5.8528 4.4316 37 1 9.2548 -2.5899 1.3113 38 1 8.8329 -1.0067 2.1582 39 1 8.7071 -2.2275 4.3787 40 1 9.1287 -3.8110 3.5328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355750435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:30:01 Heat of formation + Delta-G solvation = -67.795268 kcal Electronic energy + Delta-G solvation = -20711.214327 eV Core-core repulsion = 17526.144913 eV Total energy + Delta-G solvation = -3185.069414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08929 -38.90876 -38.13169 -36.35942 -34.94728 -34.33656 -33.92433 -30.87526 -27.97220 -27.00347 -26.87239 -23.00675 -22.52334 -21.59322 -21.21219 -20.66672 -19.34515 -18.27428 -18.07297 -17.16865 -16.71539 -16.40270 -16.12055 -15.80197 -15.59789 -15.18825 -14.90627 -14.63794 -14.39215 -14.05871 -13.71335 -13.44423 -13.08762 -12.92719 -12.79896 -12.54104 -12.40643 -12.38457 -12.01340 -11.82818 -11.45247 -11.25074 -10.93006 -10.91985 -10.43275 -10.30455 -10.11795 -10.01657 -9.55856 -8.08050 -6.22122 1.41027 1.43120 1.44942 1.51028 1.86583 2.27100 2.42890 3.19835 3.34349 3.44955 3.63549 3.84031 4.04683 4.24047 4.26253 4.42732 4.46295 4.56419 4.57105 4.67031 4.75198 4.80954 4.85199 4.99767 5.03318 5.11318 5.16649 5.29896 5.56887 5.61895 5.65264 5.74812 5.77285 5.79858 5.90089 6.19702 6.38235 6.84935 6.91496 7.26161 7.47282 7.71550 8.98906 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.005119 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.142339 B = 5468.194679 C = 6500.035823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.168 4.168 3 C -0.080 4.080 4 C 0.166 3.834 5 H 0.078 0.922 6 C 0.070 3.930 7 O -0.576 6.576 8 N -0.722 5.722 9 C 0.696 3.304 10 O -0.646 6.646 11 N -0.717 5.717 12 C 0.201 3.799 13 C 0.002 3.998 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.024 3.976 17 N -0.908 5.908 18 Si 0.949 3.051 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.274 1.274 22 C -0.176 4.176 23 C -0.152 4.152 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.394 0.606 32 H 0.407 0.593 33 H 0.405 0.595 34 H 0.022 0.978 35 H 0.034 0.966 36 H 0.259 0.741 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 14.192 -10.011 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.187 4.187 3 C -0.118 4.118 4 C 0.061 3.939 5 H 0.097 0.903 6 C -0.009 4.009 7 O -0.384 6.384 8 N -0.378 5.378 9 C 0.396 3.604 10 O -0.530 6.530 11 N -0.370 5.370 12 C 0.076 3.924 13 C 0.001 3.999 14 C -0.541 4.541 15 H 0.081 0.919 16 C -0.176 4.176 17 N -0.545 5.545 18 Si 0.776 3.224 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.199 1.199 22 C -0.214 4.214 23 C -0.190 4.190 24 H 0.115 0.885 25 H 0.131 0.869 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.244 0.756 32 H 0.242 0.758 33 H 0.241 0.759 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.166 13.867 -8.978 18.428 hybrid contribution 0.239 -1.020 -0.319 1.095 sum -7.927 12.847 -9.297 17.729 Atomic orbital electron populations 1.24007 0.95627 1.02681 1.00461 1.23007 0.96558 0.98576 1.00518 1.20858 0.97123 0.95949 0.97827 1.20976 0.87691 0.85366 0.99861 0.90348 1.22531 0.96451 0.96332 0.85600 1.86403 1.74662 1.43510 1.33848 1.44955 1.42091 1.42893 1.07834 1.16212 0.79667 0.79776 0.84712 1.90823 1.70282 1.66693 1.25161 1.44936 1.40489 1.40467 1.11137 1.20377 0.93219 0.92904 0.85913 1.19082 0.85705 0.94755 1.00327 1.20615 1.43571 0.97298 0.92598 0.91905 1.25695 0.95512 1.01115 0.95295 1.70106 1.48861 1.28680 1.06887 0.85753 0.79174 0.79271 0.78235 1.19366 1.21717 1.19896 1.22980 1.02880 0.97919 0.97573 1.22383 1.04273 0.99451 0.92926 0.88490 0.86888 0.88803 0.88186 0.89179 0.90368 0.95448 0.75647 0.75765 0.75946 0.95997 0.94796 0.93223 0.89679 0.89562 0.91289 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 14.32 67.78 0.97 -2.49 16 2 C -0.17 -3.50 9.25 25.65 0.24 -3.26 16 3 C -0.08 -1.46 4.92 29.85 0.15 -1.31 16 4 C 0.17 4.01 2.36 44.99 0.11 4.12 16 5 H 0.08 2.24 7.58 -2.38 -0.02 2.22 16 6 C 0.07 1.46 6.85 71.98 0.49 1.95 16 7 O -0.58 -10.47 12.83 -148.98 -1.91 -12.38 16 8 N -0.72 -20.58 4.72 -457.82 -2.16 -22.75 16 9 C 0.70 26.93 8.53 179.05 1.53 28.45 16 10 O -0.65 -30.12 16.00 -3.97 -0.06 -30.18 16 11 N -0.72 -28.49 5.48 -478.55 -2.62 -31.11 16 12 C 0.20 9.46 5.50 86.38 0.48 9.93 16 13 C 0.00 0.10 1.47 -52.93 -0.08 0.02 16 14 C -0.50 -25.89 8.59 25.60 0.22 -25.67 16 15 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 16 C 0.02 1.31 5.43 84.65 0.46 1.77 16 17 N -0.91 -51.76 12.65 21.45 0.27 -51.49 16 18 Si 0.95 42.56 29.54 68.60 2.03 44.59 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 C -0.18 -7.17 9.96 30.62 0.30 -6.86 16 23 C -0.15 -7.07 9.14 30.62 0.28 -6.79 16 24 H 0.10 1.71 8.06 -2.91 -0.02 1.69 16 25 H 0.11 1.60 7.84 -2.91 -0.02 1.58 16 26 H 0.09 2.25 8.03 -2.91 -0.02 2.22 16 27 H 0.10 1.42 7.79 -2.39 -0.02 1.40 16 28 H 0.09 1.60 7.73 -2.39 -0.02 1.58 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.39 3.89 9.12 -74.06 -0.68 3.21 16 32 H 0.41 9.89 8.62 -92.71 -0.80 9.09 16 33 H 0.41 14.50 8.34 -92.71 -0.77 13.72 16 34 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.03 1.59 8.09 -2.38 -0.02 1.57 16 36 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 37 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -66.85 343.20 -0.52 -67.37 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -1.20 Total: 36.07 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.14 Total: -0.13 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -4.52 Total: -105.34 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -1.97 Total: -42.56 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -66.85 -0.52 -67.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355750435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.422 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds