Wall clock time and date at job start Mon Mar 30 2020 21:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86802 * 120.00319 * 2 1 4 4 H 1.48496 * 109.46781 * 269.99814 * 3 2 1 5 5 H 1.48498 * 109.47104 * 29.99616 * 3 2 1 6 6 H 1.48498 * 109.47273 * 150.00278 * 3 2 1 7 7 C 1.38960 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99637 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00289 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00252 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99782 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00386 * 179.97438 * 10 9 7 13 13 S 1.81394 * 109.47345 * 180.02562 * 12 10 9 14 14 O 1.42101 * 109.46934 * 70.94762 * 13 12 10 15 15 C 1.76200 * 102.99885 * 180.02562 * 13 12 10 16 16 N 1.31814 * 119.67121 * 274.86937 * 15 13 12 17 17 C 1.31861 * 121.79552 * 180.02562 * 16 15 13 18 18 C 1.38265 * 120.93100 * 0.02562 * 17 16 15 19 19 C 1.38492 * 119.24434 * 359.97438 * 18 17 16 20 20 C 1.38896 * 119.66980 * 94.87213 * 15 13 12 21 21 N 1.39703 * 120.49312 * 0.02562 * 20 15 13 22 22 H 0.96998 * 119.99829 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99687 * 359.97438 * 9 7 2 24 24 H 1.09003 * 109.46640 * 60.00336 * 12 10 9 25 25 H 1.08996 * 109.47172 * 300.00895 * 12 10 9 26 26 H 1.07997 * 119.52861 * 180.02562 * 17 16 15 27 27 H 1.08005 * 120.38075 * 179.97438 * 18 17 16 28 28 H 1.07998 * 120.82347 * 179.71702 * 19 18 17 29 29 H 0.96998 * 120.00287 * 185.98432 * 21 20 15 30 30 H 0.97006 * 120.00048 * 5.98610 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0021 11 8 3.4472 -3.4210 0.0021 12 6 5.5606 -2.3708 0.0021 13 16 6.1652 -4.0810 0.0029 14 8 5.9108 -4.6739 -1.2632 15 6 7.9160 -3.8824 0.0036 16 7 8.5539 -3.7126 -1.1374 17 6 9.8628 -3.5605 -1.1856 18 6 10.6229 -3.5740 -0.0307 19 6 9.9944 -3.7496 1.1908 20 6 8.6102 -3.9064 1.2064 21 7 7.9307 -4.0872 2.4135 22 1 -0.4850 0.8400 -0.0004 23 1 3.8648 -0.3634 0.0007 24 1 5.9239 -1.8562 0.8917 25 1 5.9240 -1.8576 -0.8882 26 1 10.3479 -3.4235 -2.1407 27 1 11.6945 -3.4490 -0.0806 28 1 10.5638 -3.7688 2.1084 29 1 8.4088 -4.0164 3.2546 30 1 6.9808 -4.2836 2.4107 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042197708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:31:27 Heat of formation + Delta-G solvation = -30.919665 kcal Electronic energy + Delta-G solvation = -17654.127378 eV Core-core repulsion = 14576.317781 eV Total energy + Delta-G solvation = -3077.809597 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15135 -38.36411 -35.73455 -35.03879 -34.12272 -32.20517 -31.78725 -29.45461 -29.13181 -24.57581 -24.04191 -23.02568 -19.66163 -18.73606 -18.05184 -17.71864 -17.13956 -16.50520 -15.72774 -15.20981 -15.13355 -14.74100 -14.60327 -14.38106 -13.83670 -13.38277 -13.22631 -12.72264 -12.55511 -12.48100 -12.15604 -11.60604 -11.51567 -11.20398 -10.64306 -10.39295 -10.03970 -9.89164 -9.67377 -9.40592 -8.81629 -8.34863 -8.26895 -7.99426 -6.38254 -3.90003 0.75280 1.29749 1.96961 2.88399 2.98012 3.04104 3.11676 3.38489 3.57995 3.70171 4.04647 4.12353 4.57752 4.63761 4.76583 4.86325 5.11663 5.14632 5.30655 5.54221 5.63311 5.64825 5.92858 5.94775 6.35906 6.94705 7.32886 7.46566 7.90292 8.05306 8.46320 8.84381 9.33459 9.67680 10.74183 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.004749 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.666795 B = 5894.704318 C = 6158.526130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.310 4.310 8 H 0.124 0.876 9 N -0.575 5.575 10 C 0.471 3.529 11 O -0.579 6.579 12 C -0.481 4.481 13 S 1.394 4.606 14 O -0.812 6.812 15 C -0.322 4.322 16 N -0.384 5.384 17 C 0.020 3.980 18 C -0.096 4.096 19 C -0.170 4.170 20 C 0.233 3.767 21 N -0.863 5.863 22 H 0.275 0.725 23 H 0.373 0.627 24 H 0.126 0.874 25 H 0.107 0.893 26 H 0.152 0.848 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.406 0.594 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.484 -3.660 8.495 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.439 4.439 8 H 0.141 0.859 9 N -0.212 5.212 10 C 0.256 3.744 11 O -0.465 6.465 12 C -0.620 4.620 13 S 1.584 4.416 14 O -0.807 6.807 15 C -0.556 4.556 16 N -0.092 5.092 17 C -0.144 4.144 18 C -0.117 4.117 19 C -0.202 4.202 20 C 0.122 3.878 21 N -0.403 5.403 22 H 0.086 0.914 23 H 0.206 0.794 24 H 0.145 0.855 25 H 0.125 0.875 26 H 0.170 0.830 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.235 0.765 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 19.863 -5.039 7.681 21.884 hybrid contribution 1.957 2.752 -0.654 3.440 sum 21.820 -2.287 7.027 23.037 Atomic orbital electron populations 1.69613 1.05643 1.27707 1.48382 1.25052 0.95510 0.98027 0.97275 0.86696 0.79825 0.83987 0.79105 1.19511 1.19925 1.19403 1.19518 0.79040 0.96896 1.48403 0.85869 1.42158 1.07609 1.06136 1.65307 1.18706 0.86091 0.84920 0.84666 1.90595 1.69327 1.30576 1.55976 1.28023 1.02411 1.23207 1.08321 1.69735 0.77222 0.85086 1.09590 1.93128 1.78489 1.65411 1.43640 1.30581 1.20397 1.14181 0.90435 1.67957 1.10351 1.03981 1.26932 1.22763 0.90344 1.02820 0.98499 1.22050 1.00993 0.95657 0.92964 1.21123 0.92522 1.07397 0.99121 1.18331 0.91915 0.90683 0.86886 1.42614 1.12761 1.80076 1.04852 0.91423 0.79374 0.85544 0.87467 0.83041 0.84795 0.84599 0.76467 0.76384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.31 13.96 55.50 0.77 -24.54 16 2 C 0.05 1.24 5.50 -17.47 -0.10 1.14 16 3 Si 0.88 19.36 27.74 -169.99 -4.71 14.64 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.31 -8.78 10.16 -14.93 -0.15 -8.93 16 8 H 0.12 3.94 7.39 -52.49 -0.39 3.56 16 9 N -0.57 -13.95 5.09 -10.96 -0.06 -14.01 16 10 C 0.47 10.88 7.80 -10.99 -0.09 10.80 16 11 O -0.58 -15.37 15.44 5.55 0.09 -15.29 16 12 C -0.48 -8.28 6.37 36.01 0.23 -8.05 16 13 S 1.39 22.40 11.24 -107.50 -1.21 21.19 16 14 O -0.81 -18.69 17.64 -35.23 -0.62 -19.31 16 15 C -0.32 -4.63 6.47 -17.32 -0.11 -4.74 16 16 N -0.38 -6.28 10.02 -12.28 -0.12 -6.41 16 17 C 0.02 0.24 11.18 -17.53 -0.20 0.05 16 18 C -0.10 -0.89 10.10 -39.48 -0.40 -1.29 16 19 C -0.17 -1.49 10.05 -39.09 -0.39 -1.88 16 20 C 0.23 2.38 6.77 -83.63 -0.57 1.82 16 21 N -0.86 -5.43 9.02 32.49 0.29 -5.13 16 22 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.37 7.99 5.76 -40.82 -0.24 7.75 16 24 H 0.13 1.62 8.14 -51.92 -0.42 1.19 16 25 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 26 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 28 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.41 1.33 8.86 -40.82 -0.36 0.97 16 30 H 0.41 2.20 7.39 -40.82 -0.30 1.90 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -40.53 283.43 -5.64 -46.17 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -2.57 Total: 9.50 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.77 Total: -11.08 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.89 Total: -50.09 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.54 Total: -34.60 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.64 kcal Atomic # 16 Polarization: 22.40 SS G_CDS: -1.21 Total: 21.19 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -40.53 -5.64 -46.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042197708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.252 kcal (2) G-P(sol) polarization free energy of solvation -40.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds