Wall clock time and date at job start Mon Mar 30 2020 21:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00218 * 2 1 4 4 H 1.09000 * 109.47242 * 329.99921 * 3 2 1 5 5 C 1.53002 * 109.47413 * 209.99966 * 3 2 1 6 6 C 1.50696 * 109.47531 * 89.99737 * 3 2 1 7 7 C 1.39014 * 126.77010 * 45.02812 * 6 3 2 8 8 C 1.41499 * 126.02034 * 359.93780 * 7 6 3 9 9 H 1.07998 * 120.00001 * 0.02562 * 8 7 6 10 10 C 1.39740 * 120.00022 * 180.02562 * 8 7 6 11 11 N 1.30985 * 119.99682 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00071 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.46807 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47429 * 119.99923 * 12 10 8 15 15 H 1.48506 * 109.47013 * 240.00222 * 12 10 8 16 16 N 1.34843 * 107.96000 * 179.97438 * 7 6 3 17 17 N 1.28663 * 109.63451 * 359.75111 * 16 7 6 18 18 N 1.35021 * 126.77376 * 224.99895 * 6 3 2 19 19 C 1.46497 * 126.49658 * 359.97438 * 18 6 3 20 20 H 1.09002 * 109.46725 * 359.97438 * 19 18 6 21 21 C 1.52992 * 109.47081 * 119.99507 * 19 18 6 22 22 C 1.52997 * 109.47188 * 239.99963 * 19 18 6 23 23 H 1.09002 * 109.47153 * 299.99573 * 22 19 18 24 24 C 1.53002 * 109.46817 * 179.97438 * 22 19 18 25 25 O 1.42898 * 109.47319 * 59.99880 * 22 19 18 26 26 H 1.08995 * 109.46982 * 59.99759 * 1 2 3 27 27 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47007 * 300.00099 * 1 2 3 29 29 H 1.09000 * 109.46880 * 300.00177 * 5 3 2 30 30 H 1.09007 * 109.47043 * 59.99666 * 5 3 2 31 31 H 1.08997 * 109.47400 * 179.97438 * 5 3 2 32 32 H 0.97005 * 119.99646 * 179.97438 * 11 10 8 33 33 H 1.08996 * 109.47747 * 300.00111 * 21 19 18 34 34 H 1.09002 * 109.47103 * 60.00523 * 21 19 18 35 35 H 1.09001 * 109.47066 * 180.02562 * 21 19 18 36 36 H 1.08996 * 109.47407 * 60.00219 * 24 22 19 37 37 H 1.09000 * 109.46986 * 179.97438 * 24 22 19 38 38 H 1.09002 * 109.47075 * 299.99262 * 24 22 19 39 39 H 0.96698 * 113.99898 * 59.99520 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 3.3590 1.2632 -0.7212 6 6 2.2146 1.7644 1.4207 7 6 2.7453 1.0196 2.4677 8 6 3.1945 -0.3201 2.3918 9 1 3.1409 -0.8554 1.4554 10 6 3.7077 -0.9504 3.5286 11 7 3.7723 -0.3012 4.6644 12 14 4.3014 -2.7186 3.4283 13 1 4.1215 -3.2233 2.0432 14 1 5.7392 -2.7796 3.7950 15 1 3.5150 -3.5588 4.3669 16 7 2.7557 1.7983 3.5685 17 7 2.2806 2.9590 3.2814 18 7 1.9189 2.9803 1.9278 19 6 1.3364 4.1100 1.1993 20 1 1.1701 3.8253 0.1603 21 6 0.0034 4.4983 1.8418 22 6 2.2952 5.3010 1.2540 23 1 2.4619 5.5858 2.2929 24 6 1.6871 6.4806 0.4926 25 8 3.5402 4.9382 0.6538 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.0242 0.5692 -0.2074 30 1 3.2112 0.9312 -1.7490 31 1 3.8021 2.2590 -0.7216 32 1 4.1281 -0.7389 5.4536 33 1 -0.6797 3.6499 1.8029 34 1 0.1701 4.7831 2.8807 35 1 -0.4302 5.3386 1.2995 36 1 0.7373 6.7575 0.9500 37 1 2.3699 7.3293 0.5320 38 1 1.5208 6.1955 -0.5463 39 1 3.4675 4.6728 -0.2732 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:32:49 Heat of formation + Delta-G solvation = -10.299935 kcal Electronic energy + Delta-G solvation = -22174.480048 eV Core-core repulsion = 18926.477907 eV Total energy + Delta-G solvation = -3248.002140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14284 -37.80248 -37.24222 -34.19692 -33.04537 -31.90077 -30.48378 -28.49928 -28.38696 -25.90880 -25.16536 -24.26131 -22.51807 -21.81963 -19.66007 -19.15017 -17.38515 -16.11276 -16.04382 -15.75860 -15.01253 -14.82353 -14.64252 -14.38802 -14.15017 -13.39534 -13.10695 -12.85366 -12.57974 -12.32373 -12.21324 -11.92754 -11.73796 -11.68210 -11.50619 -11.16938 -11.09425 -10.96988 -10.84585 -10.68743 -10.35803 -10.14346 -9.97624 -9.62895 -9.17289 -9.10350 -8.68157 -8.34373 -7.30614 -6.26369 -4.01812 2.85381 3.23164 3.28737 3.34713 3.52567 4.24287 4.38727 4.43586 4.53094 4.61162 4.99136 5.11177 5.22123 5.30351 5.43951 5.50567 5.62693 5.65072 5.70914 5.75349 5.80938 5.86758 5.98213 6.04979 6.10496 6.13849 6.28658 6.29454 6.38942 6.84814 7.03536 7.25663 7.34755 7.63017 7.76008 7.93084 8.23503 8.68983 8.95727 9.23508 10.31123 10.70476 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.007026 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.250672 B = 3984.194124 C = 4492.715952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.362 6.362 3 C 0.196 3.804 4 H 0.038 0.962 5 C -0.139 4.139 6 C -0.154 4.154 7 C 0.174 3.826 8 C -0.433 4.433 9 H 0.091 0.909 10 C 0.069 3.931 11 N -0.778 5.778 12 Si 0.904 3.096 13 H -0.262 1.262 14 H -0.279 1.279 15 H -0.279 1.279 16 N -0.232 5.232 17 N -0.120 5.120 18 N -0.363 5.363 19 C 0.133 3.867 20 H 0.085 0.915 21 C -0.159 4.159 22 C 0.097 3.903 23 H 0.108 0.892 24 C -0.184 4.184 25 O -0.548 6.548 26 H 0.027 0.973 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.269 0.731 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 7.442 -11.201 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.136 3.864 4 H 0.056 0.944 5 C -0.197 4.197 6 C -0.284 4.284 7 C 0.045 3.955 8 C -0.469 4.469 9 H 0.109 0.891 10 C -0.149 4.149 11 N -0.405 5.405 12 Si 0.729 3.271 13 H -0.186 1.186 14 H -0.204 1.204 15 H -0.204 1.204 16 N -0.105 5.105 17 N -0.097 5.097 18 N -0.161 5.161 19 C 0.028 3.972 20 H 0.103 0.897 21 C -0.217 4.217 22 C 0.036 3.964 23 H 0.126 0.874 24 C -0.242 4.242 25 O -0.352 6.352 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -5.834 8.191 -9.047 13.526 hybrid contribution -0.383 -1.163 -1.437 1.888 sum -6.217 7.028 -10.484 14.070 Atomic orbital electron populations 1.22609 0.82638 1.01890 0.98755 1.88023 1.18215 1.27200 1.94455 1.19721 0.93941 0.83665 0.89123 0.94432 1.21790 0.96606 1.02498 0.98783 1.21714 1.20255 0.88601 0.97830 1.18909 0.96509 0.94737 0.85320 1.18765 1.37032 0.94336 0.96744 0.89114 1.25850 0.94733 0.99184 0.95124 1.70051 1.34163 1.36307 1.00010 0.86335 0.78501 0.83079 0.79154 1.18586 1.20423 1.20448 1.75116 1.14633 0.96935 1.23837 1.81393 1.19370 1.18225 0.90708 1.49292 1.48149 1.08966 1.09671 1.21672 0.93591 0.86588 0.95383 0.89717 1.22136 0.95596 1.01636 1.02371 1.22293 0.83784 0.91474 0.98836 0.87369 1.22571 1.01960 0.99079 1.00603 1.86722 1.30241 1.88808 1.29387 0.95452 0.90272 0.94498 0.90343 0.93082 0.92064 0.92042 0.92123 0.90970 0.91264 0.91051 0.91487 0.92350 0.78735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.81 101.05 1.09 1.71 16 2 O -0.36 -7.22 8.79 -35.23 -0.31 -7.53 16 3 C 0.20 3.70 2.87 -27.88 -0.08 3.62 16 4 H 0.04 0.61 6.31 -51.93 -0.33 0.28 16 5 C -0.14 -2.38 9.54 37.16 0.35 -2.02 16 6 C -0.15 -3.57 6.04 -80.90 -0.49 -4.06 16 7 C 0.17 4.88 6.69 -85.01 -0.57 4.31 16 8 C -0.43 -12.14 8.68 -37.78 -0.33 -12.47 16 9 H 0.09 2.46 6.58 -52.49 -0.35 2.12 16 10 C 0.07 1.91 5.49 -17.35 -0.10 1.81 16 11 N -0.78 -22.70 11.92 55.54 0.66 -22.04 16 12 Si 0.90 20.44 29.56 -169.99 -5.02 15.41 16 13 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 N -0.23 -6.88 10.55 32.05 0.34 -6.54 16 17 N -0.12 -3.15 13.62 60.35 0.82 -2.33 16 18 N -0.36 -7.85 3.15 -49.75 -0.16 -8.01 16 19 C 0.13 2.06 2.87 -67.94 -0.20 1.86 16 20 H 0.08 1.14 6.52 -51.93 -0.34 0.80 16 21 C -0.16 -2.14 9.12 37.15 0.34 -1.80 16 22 C 0.10 1.38 3.33 -26.73 -0.09 1.29 16 23 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 24 C -0.18 -1.80 9.18 37.16 0.34 -1.46 16 25 O -0.55 -8.75 13.20 -35.23 -0.47 -9.22 16 26 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.55 7.86 -51.93 -0.41 1.15 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.27 7.22 8.30 -40.82 -0.34 6.88 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 36 H 0.07 0.61 6.43 -51.93 -0.33 0.27 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.37 4.38 9.04 45.56 0.41 4.79 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -34.51 325.58 -3.98 -38.49 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.03 Total: 4.05 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 0.28 Total: -7.20 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 1.67 Total: -38.91 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.77 Total: -16.75 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.51 -3.98 -38.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.193 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds