Wall clock time and date at job start Mon Mar 30 2020 21:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00636 * 2 1 4 4 C 1.38750 * 120.05213 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94593 * 179.68544 * 4 3 2 6 6 C 1.38295 * 120.04952 * 0.56964 * 5 4 3 7 7 C 1.50700 * 119.94062 * 179.72855 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72156 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 7 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 7 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 C 1.38240 * 120.11165 * 359.44937 * 6 5 4 17 17 C 1.38161 * 120.05897 * 0.25737 * 16 6 5 18 18 S 1.76193 * 120.03014 * 180.02562 * 17 16 6 19 19 C 1.81397 * 104.45314 * 114.99842 * 18 17 16 20 20 O 1.42106 * 104.27729 * 231.06738 * 18 17 16 21 21 O 1.42100 * 104.27857 * 358.92262 * 18 17 16 22 22 H 1.08989 * 109.47332 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46870 * 300.00267 * 1 2 3 24 24 H 1.09003 * 109.46803 * 59.99669 * 1 2 3 25 25 H 1.08002 * 120.02834 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.97978 * 180.31635 * 5 4 3 27 27 H 1.09004 * 109.47210 * 149.72449 * 7 6 5 28 28 H 1.08994 * 109.47551 * 29.72101 * 7 6 5 29 29 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 30 30 H 1.08000 * 119.96950 * 180.27695 * 16 6 5 31 31 H 1.08993 * 109.47561 * 59.99751 * 19 18 17 32 32 H 1.09002 * 109.47123 * 180.02562 * 19 18 17 33 33 H 1.09003 * 109.46904 * 299.99802 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3752 0.0005 5 6 1.9211 3.6047 0.0071 6 6 3.3022 3.6756 0.0012 7 6 3.9864 5.0183 0.0022 8 6 4.2143 5.4669 -1.4183 9 1 3.8953 4.8424 -2.2396 10 6 4.8246 6.6776 -1.6694 11 7 5.0187 7.0716 -2.9090 12 14 5.3760 7.7580 -0.2487 13 1 6.7718 7.4132 0.1226 14 1 5.3103 9.1843 -0.6572 15 1 4.4840 7.5355 0.9175 16 6 4.0561 2.5169 0.0003 17 6 3.4313 1.2846 -0.0002 18 16 4.3929 -0.1917 -0.0007 19 6 4.0180 -0.9768 1.5910 20 8 3.8591 -0.9573 -1.0723 21 8 5.7379 0.2661 -0.0264 22 1 -0.3633 -1.0275 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2130 2.3203 0.0014 26 1 1.3343 4.5113 0.0127 27 1 4.9444 4.9375 0.5159 28 1 3.3585 5.7457 0.5166 29 1 5.4483 7.9231 -3.0856 30 1 5.1346 2.5749 0.0002 31 1 2.9502 -1.1869 1.6500 32 1 4.5773 -1.9084 1.6773 33 1 4.3019 -0.3066 2.4025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260800982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:30:34 Heat of formation + Delta-G solvation = -108.579543 kcal Electronic energy + Delta-G solvation = -18640.840559 eV Core-core repulsion = 15565.485058 eV Total energy + Delta-G solvation = -3075.355501 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24166 -38.86998 -37.94174 -36.90592 -35.24476 -33.08295 -32.31175 -30.31434 -29.44282 -27.93313 -24.76491 -24.16988 -22.23483 -19.88645 -19.27764 -18.99399 -17.78804 -17.57035 -17.15869 -16.66026 -16.37882 -16.33340 -15.40886 -15.36959 -14.95770 -14.48075 -14.09963 -13.90743 -13.89387 -13.58299 -13.43366 -13.10568 -13.04160 -12.93974 -12.69608 -12.45150 -12.27004 -11.93736 -11.89836 -11.74752 -11.52890 -11.34127 -10.80250 -10.32346 -9.13805 -8.31116 -6.37464 -0.77250 -0.09177 0.39803 1.36995 1.38787 1.50199 1.95303 2.15717 2.34783 2.51557 3.00875 3.03588 3.31792 3.79694 3.90829 4.12677 4.17760 4.25375 4.42931 4.44211 4.45603 4.57344 4.67673 4.78875 4.93751 4.99401 5.05847 5.13853 5.22042 5.52370 5.67394 5.78094 6.19092 6.26287 6.69176 7.26333 8.85729 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023672 B = 0.005760 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.562323 B = 4859.581858 C = 5483.594042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.195 3.805 4 C -0.216 4.216 5 C -0.037 4.037 6 C -0.117 4.117 7 C 0.022 3.978 8 C -0.527 4.527 9 H 0.023 0.977 10 C 0.006 3.994 11 N -0.950 5.950 12 Si 0.954 3.046 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.238 1.238 16 C -0.013 4.013 17 C -0.696 4.696 18 S 2.500 3.500 19 C -0.613 4.613 20 O -0.972 6.972 21 O -0.984 6.984 22 H 0.130 0.870 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.170 0.830 26 H 0.142 0.858 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.268 0.732 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 -15.853 14.683 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.238 6.238 3 C 0.147 3.853 4 C -0.235 4.235 5 C -0.055 4.055 6 C -0.118 4.118 7 C -0.015 4.015 8 C -0.565 4.565 9 H 0.042 0.958 10 C -0.191 4.191 11 N -0.590 5.590 12 Si 0.776 3.224 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.161 1.161 16 C -0.032 4.032 17 C -0.782 4.782 18 S 2.684 3.316 19 C -0.767 4.767 20 O -0.969 6.969 21 O -0.982 6.982 22 H 0.148 0.852 23 H 0.100 0.900 24 H 0.080 0.920 25 H 0.187 0.813 26 H 0.160 0.840 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.152 0.848 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.371 -16.172 13.884 23.283 hybrid contribution -0.187 1.482 0.067 1.495 sum -9.558 -14.690 13.952 22.401 Atomic orbital electron populations 1.23562 0.75112 1.06533 1.03052 1.86017 1.24783 1.25324 1.87641 1.18300 0.90184 0.85669 0.91123 1.21576 1.01680 0.91089 1.09179 1.21386 0.93670 0.98591 0.91828 1.20228 0.94793 0.95775 1.00986 1.18643 0.96270 0.91054 0.95508 1.21225 1.39299 1.04065 0.91909 0.95846 1.26054 0.95144 0.99212 0.98715 1.70072 1.44627 1.22700 1.21643 0.85612 0.79787 0.77268 0.79724 1.19260 1.20787 1.16111 1.20721 1.00359 0.90380 0.91741 1.29749 1.04309 1.18554 1.25587 1.04941 0.73225 0.74187 0.79296 1.29922 1.14617 1.14458 1.17743 1.93517 1.80045 1.70378 1.52987 1.93514 1.35296 1.81065 1.88304 0.85157 0.90017 0.91972 0.81271 0.83992 0.95071 0.93916 0.92327 0.84821 0.82848 0.82242 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -7.51 8.49 -83.08 -0.71 -8.21 16 3 C 0.19 5.69 6.62 22.51 0.15 5.84 16 4 C -0.22 -6.03 9.04 22.37 0.20 -5.82 16 5 C -0.04 -1.26 9.69 22.26 0.22 -1.05 16 6 C -0.12 -4.86 5.07 -19.85 -0.10 -4.96 16 7 C 0.02 1.06 4.17 29.10 0.12 1.18 16 8 C -0.53 -31.08 9.65 25.60 0.25 -30.83 16 9 H 0.02 1.56 7.98 -2.91 -0.02 1.53 16 10 C 0.01 0.34 5.47 84.66 0.46 0.80 16 11 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 12 Si 0.95 43.84 27.47 68.60 1.88 45.73 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 16 C -0.01 -0.53 9.15 22.25 0.20 -0.32 16 17 C -0.70 -23.32 5.59 22.36 0.13 -23.19 16 18 S 2.50 71.81 5.38 -56.49 -0.30 71.51 16 19 C -0.61 -8.56 10.73 113.37 1.22 -7.34 16 20 O -0.97 -34.08 17.23 -122.71 -2.11 -36.20 16 21 O -0.98 -35.55 16.74 -127.65 -2.14 -37.68 16 22 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 0.74 7.66 -2.39 -0.02 0.72 16 24 H 0.06 0.84 7.66 -2.39 -0.02 0.83 16 25 H 0.17 3.22 6.30 -2.91 -0.02 3.20 16 26 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 27 H 0.03 1.42 7.52 -2.38 -0.02 1.41 16 28 H 0.04 1.88 7.13 -2.39 -0.02 1.86 16 29 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.13 5.53 7.21 -2.91 -0.02 5.51 16 31 H 0.15 1.68 7.38 -2.39 -0.02 1.66 16 32 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -83.85 294.66 1.94 -81.91 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.06 Total: 7.69 kcal Atomic # 6 Polarization: -68.39 SS G_CDS: 3.96 Total: -64.43 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.30 Total: -60.31 kcal Atomic # 8 Polarization: -77.14 SS G_CDS: -4.96 Total: -82.09 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.73 kcal Atomic # 16 Polarization: 71.81 SS G_CDS: -0.30 Total: 71.51 kcal Total: -83.85 1.94 -81.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260800982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.669 kcal (2) G-P(sol) polarization free energy of solvation -83.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds