Wall clock time and date at job start Mon Mar 30 2020 21:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48498 * 109.47258 * 240.00351 * 3 2 1 5 5 H 1.48510 * 109.47258 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47373 * 120.00180 * 3 2 1 7 7 C 1.37878 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 O 1.42905 * 109.47007 * 179.97438 * 13 11 10 15 15 C 1.42897 * 114.00262 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.46978 * 330.00615 * 15 14 13 17 17 C 1.52999 * 109.46954 * 90.00030 * 15 14 13 18 18 C 1.53000 * 109.47352 * 59.99919 * 17 15 14 19 19 C 1.52999 * 109.46642 * 59.99785 * 18 17 15 20 20 C 1.52999 * 109.47423 * 300.00172 * 19 18 17 21 21 C 1.52995 * 109.47269 * 210.00001 * 15 14 13 22 22 H 1.09004 * 109.47149 * 180.02562 * 21 15 14 23 23 C 1.52999 * 109.47109 * 60.00123 * 21 15 14 24 24 N 1.46902 * 109.46987 * 175.00155 * 23 21 15 25 25 H 0.97003 * 119.99632 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 27 27 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 28 28 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 30 30 H 1.08993 * 109.47525 * 59.99679 * 13 11 10 31 31 H 1.08998 * 109.47210 * 180.02562 * 17 15 14 32 32 H 1.09005 * 109.46831 * 300.00268 * 17 15 14 33 33 H 1.08994 * 109.47468 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.47024 * 300.00185 * 18 17 15 35 35 H 1.08996 * 109.47336 * 60.00594 * 19 18 17 36 36 H 1.09006 * 109.47024 * 179.97438 * 19 18 17 37 37 H 1.09007 * 109.46950 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.47210 * 299.99726 * 20 19 18 39 39 H 1.09001 * 109.47153 * 294.99708 * 23 21 15 40 40 H 1.08997 * 109.47374 * 55.00225 * 23 21 15 41 41 H 1.00897 * 111.00185 * 56.04571 * 24 23 21 42 42 H 1.00901 * 110.99736 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1049 -0.0020 13 6 2.7331 -6.0287 -0.0072 14 8 2.0186 -7.2663 -0.0060 15 6 2.8586 -8.4224 -0.0121 16 1 3.7897 -8.1922 -0.5300 17 6 3.1653 -8.8376 1.4282 18 6 1.8584 -9.1605 2.1552 19 6 1.1440 -10.3061 1.4353 20 6 0.8373 -9.8909 -0.0050 21 6 2.1442 -9.5680 -0.7320 22 1 2.7848 -10.4499 -0.7362 23 6 1.8375 -9.1528 -2.1722 24 7 1.2605 -10.2923 -2.8979 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 3.1568 -3.4353 -0.0002 29 1 3.3560 -5.9693 -0.8997 30 1 3.3635 -5.9726 0.8802 31 1 3.8063 -9.7191 1.4235 32 1 3.6742 -8.0213 1.9410 33 1 2.0769 -9.4567 3.1811 34 1 1.2177 -8.2787 2.1598 35 1 1.7846 -11.1879 1.4306 36 1 0.2131 -10.5365 1.9535 37 1 0.3280 -10.7070 -0.5177 38 1 0.1966 -9.0092 -0.0004 39 1 1.1265 -8.3266 -2.1687 40 1 2.7581 -8.8378 -2.6635 41 1 0.4410 -10.6441 -2.4260 42 1 1.0493 -10.0434 -3.8527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089172421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:33:31 Heat of formation + Delta-G solvation = -110.856025 kcal Electronic energy + Delta-G solvation = -21205.507017 eV Core-core repulsion = 17991.258869 eV Total energy + Delta-G solvation = -3214.248147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85579 -38.57915 -36.08924 -34.61654 -34.15160 -32.35330 -30.33569 -30.28410 -28.41677 -26.25042 -24.75514 -22.65141 -22.41935 -21.08519 -19.79662 -19.64280 -17.38027 -16.41745 -16.33930 -15.96803 -15.65516 -15.09224 -14.85146 -14.79070 -14.42944 -14.12589 -13.73769 -13.48512 -13.22264 -13.02258 -12.54545 -12.28143 -12.13586 -11.95502 -11.73680 -11.57319 -11.43992 -11.07043 -11.01445 -10.88342 -10.55852 -10.46701 -10.32780 -10.04639 -9.44870 -9.43255 -8.99672 -8.79644 -8.74994 -7.90884 -6.18044 -4.25422 3.24088 3.27878 3.29898 3.33444 3.37950 4.25876 4.32668 4.47396 4.60907 4.70395 4.80299 5.02919 5.14243 5.17842 5.19865 5.24448 5.29863 5.38933 5.43252 5.46219 5.51687 5.55867 5.69615 5.80183 5.86869 5.92202 6.10426 6.12187 6.22296 6.24926 6.47251 6.97636 7.15144 7.27115 7.31718 7.42207 7.49885 7.65523 7.95048 8.59111 8.76454 9.07863 9.41185 10.92117 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030927 B = 0.003429 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.143975 B = 8163.390809 C = 8449.282239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.712 5.712 11 C 0.499 3.501 12 O -0.536 6.536 13 C 0.042 3.958 14 O -0.346 6.346 15 C 0.090 3.910 16 H 0.060 0.940 17 C -0.139 4.139 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.077 4.077 22 H 0.085 0.915 23 C 0.063 3.937 24 N -0.854 5.854 25 H 0.267 0.733 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.390 0.610 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.339 0.661 42 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -19.651 -0.244 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.363 5.363 11 C 0.282 3.718 12 O -0.414 6.414 13 C -0.038 4.038 14 O -0.264 6.264 15 C 0.032 3.968 16 H 0.078 0.922 17 C -0.177 4.177 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.095 4.095 22 H 0.104 0.896 23 C -0.067 4.067 24 N -0.384 5.384 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.223 0.777 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.152 0.848 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.900 -20.030 -0.100 21.185 hybrid contribution 0.445 1.725 -0.078 1.783 sum 7.345 -18.305 -0.179 19.724 Atomic orbital electron populations 1.69967 1.06125 1.27457 1.48696 1.24955 0.94921 0.99457 0.94662 0.86463 0.79407 0.82270 0.78690 1.20052 1.21046 1.20054 1.21183 0.93236 0.90419 1.53477 0.91911 1.19105 0.88234 0.81723 0.97803 1.46385 1.11180 1.05733 1.72982 1.20109 0.89385 0.84006 0.78278 1.90681 1.16621 1.84650 1.49405 1.22339 0.94517 0.85314 1.01643 1.88075 1.31778 1.11655 1.94911 1.22137 0.93200 0.86262 0.95230 0.92199 1.22005 0.98189 1.01351 0.96151 1.21439 0.96668 0.99381 0.97966 1.21479 1.00118 0.97818 0.95818 1.21537 0.97084 1.01519 0.95064 1.21230 0.97859 0.96764 0.93677 0.89638 1.21790 0.99651 0.91968 0.93335 1.58825 1.37033 1.36105 1.06398 0.92351 0.95501 0.95488 0.77741 0.91047 0.91063 0.91287 0.91771 0.92482 0.90709 0.92492 0.92164 0.92309 0.90678 0.93937 0.91514 0.84781 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 10 N -0.71 -14.94 5.55 -61.48 -0.34 -15.29 16 11 C 0.50 10.13 7.91 -10.98 -0.09 10.05 16 12 O -0.54 -13.47 16.50 -14.35 -0.24 -13.71 16 13 C 0.04 0.61 6.23 36.00 0.22 0.83 16 14 O -0.35 -5.15 7.59 -55.14 -0.42 -5.57 16 15 C 0.09 1.00 2.35 -26.73 -0.06 0.94 16 16 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 17 C -0.14 -1.39 5.63 -26.73 -0.15 -1.54 16 18 C -0.12 -1.27 5.78 -26.73 -0.15 -1.42 16 19 C -0.11 -1.14 5.92 -26.73 -0.16 -1.29 16 20 C -0.11 -1.23 4.83 -26.73 -0.13 -1.36 16 21 C -0.08 -0.80 2.23 -90.63 -0.20 -1.00 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 23 C 0.06 0.69 6.03 -3.82 -0.02 0.67 16 24 N -0.85 -8.12 9.62 -10.37 -0.10 -8.22 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 29 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.63 7.87 -51.93 -0.41 0.23 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.01 7.68 -51.93 -0.40 0.62 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.56 6.68 -51.93 -0.35 0.21 16 38 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 39 H 0.04 0.57 7.84 -51.93 -0.41 0.16 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.34 2.98 7.25 -39.29 -0.28 2.70 16 42 H 0.34 2.82 9.08 -39.29 -0.36 2.46 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -32.49 337.64 -8.57 -41.06 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.09 Total: 7.11 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.19 Total: -0.84 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.30 Total: -48.87 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.66 Total: -19.28 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.49 -8.57 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089172421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.793 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds