Wall clock time and date at job start Mon Mar 30 2020 21:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.42896 * 114.00086 * 180.02562 * 17 16 14 19 19 C 1.53117 * 109.52134 * 269.68558 * 18 17 16 20 20 C 1.53048 * 109.27530 * 182.44134 * 19 18 17 21 21 N 1.46842 * 109.52132 * 59.17950 * 20 19 18 22 22 C 1.46843 * 111.19883 * 298.25356 * 21 20 19 23 23 C 1.53038 * 109.52105 * 61.75068 * 22 21 20 24 24 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 25 25 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 28 28 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 29 29 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 30 30 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 31 31 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 32 32 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 33 33 H 1.09000 * 109.51989 * 29.87810 * 18 17 16 34 34 H 1.09000 * 109.50651 * 302.37653 * 19 18 17 35 35 H 1.08997 * 109.50339 * 62.50131 * 19 18 17 36 36 H 1.08992 * 109.45811 * 299.15991 * 20 19 18 37 37 H 1.08997 * 109.45881 * 179.19437 * 20 19 18 38 38 H 1.00902 * 111.00374 * 62.35613 * 21 20 19 39 39 H 1.08989 * 109.46768 * 301.73011 * 22 21 20 40 40 H 1.09008 * 109.45240 * 181.75003 * 22 21 20 41 41 H 1.09000 * 109.50407 * 180.88150 * 23 22 21 42 42 H 1.08996 * 109.50965 * 60.76056 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7224 4.5043 -3.7603 19 6 -1.3665 5.9919 -3.6908 20 6 -1.9185 6.7019 -4.9292 21 7 -3.3759 6.5308 -4.9841 22 6 -3.7402 5.1129 -5.0990 23 6 -3.2427 4.3556 -3.8656 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8116 0.4042 0.4384 30 1 2.2954 2.1150 -1.9977 31 1 0.7620 4.1421 -2.8933 32 1 0.1091 2.6000 -3.4965 33 1 -1.2511 4.0565 -4.6352 34 1 -1.8058 6.4298 -2.7944 35 1 -0.2830 6.1058 -3.6587 36 1 -1.4684 6.2729 -5.8244 37 1 -1.6792 7.7639 -4.8758 38 1 -3.8201 6.9547 -4.1834 39 1 -3.2817 4.6914 -5.9934 40 1 -4.8241 5.0211 -5.1687 41 1 -3.4995 3.3004 -3.9584 42 1 -3.7114 4.7676 -2.9720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111758564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:30:51 Heat of formation + Delta-G solvation = -96.933995 kcal Electronic energy + Delta-G solvation = -21304.152621 eV Core-core repulsion = 18090.508178 eV Total energy + Delta-G solvation = -3213.644443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.75826 -38.94554 -36.78667 -35.11585 -32.50095 -31.63561 -31.20577 -30.94150 -28.11501 -26.49487 -23.41498 -23.23118 -22.37303 -20.87991 -20.58703 -19.53424 -17.89800 -17.17516 -16.51867 -16.03369 -15.70976 -15.28667 -15.00069 -14.63646 -14.24558 -13.99823 -13.44461 -13.26439 -13.09857 -12.75796 -12.58078 -12.47506 -12.40133 -12.10103 -11.77340 -11.63289 -11.53786 -11.10550 -10.81595 -10.73737 -10.70603 -10.43802 -9.87000 -9.79095 -9.61395 -9.22684 -9.10739 -8.79554 -8.27315 -8.10483 -6.63539 -4.22611 3.16629 3.20636 3.40666 3.45659 3.61638 3.97054 4.22177 4.42916 4.50337 4.60412 4.76719 4.84972 4.96483 5.05870 5.06659 5.13580 5.27722 5.35045 5.35852 5.42718 5.53261 5.62732 5.68987 5.87941 5.92628 6.07889 6.10040 6.28442 6.63801 6.69100 6.79443 6.95865 6.98450 7.04316 7.07889 7.36332 7.42542 7.65937 8.22312 8.45594 8.68878 8.96891 9.42054 10.74391 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036926 B = 0.003682 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.096963 B = 7603.276747 C = 7851.264649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.253 3.747 4 H 0.040 0.960 5 C -0.630 4.630 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.886 5.886 9 Si 1.029 2.971 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.501 3.499 15 O -0.530 6.530 16 C 0.043 3.957 17 O -0.354 6.354 18 C 0.088 3.912 19 C -0.182 4.182 20 C 0.060 3.940 21 N -0.688 5.688 22 C 0.060 3.940 23 C -0.155 4.155 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.343 0.657 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.786 8.254 -13.454 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.149 3.851 4 H 0.058 0.942 5 C -0.667 4.667 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.285 3.715 15 O -0.407 6.407 16 C -0.038 4.038 17 O -0.272 6.272 18 C 0.030 3.970 19 C -0.221 4.221 20 C -0.070 4.070 21 N -0.316 5.316 22 C -0.070 4.070 23 C -0.194 4.194 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.161 0.839 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.348 8.037 -11.667 20.164 hybrid contribution 0.752 -0.033 -1.351 1.546 sum -13.596 8.004 -13.018 20.454 Atomic orbital electron populations 1.21897 0.97369 0.98867 1.02028 1.22234 0.93696 0.99702 1.01392 1.19013 0.95743 0.88444 0.81863 0.94180 1.21977 0.89679 1.50168 1.04893 0.91933 1.25610 0.96591 0.91619 1.02093 1.70874 1.13889 1.36386 1.30556 0.84229 0.76061 0.77699 0.76426 1.20806 1.20646 1.19882 1.46183 1.14171 1.56435 1.18351 1.20057 0.82995 0.79725 0.88730 1.90686 1.50436 1.58659 1.40905 1.22344 0.85832 0.98202 0.97373 1.88076 1.28883 1.74356 1.35852 1.22130 0.94990 0.91829 0.88050 1.22830 1.02442 0.96582 1.00287 1.22007 0.87682 1.00604 0.96741 1.60646 1.08644 1.14713 1.47628 1.22031 1.00990 0.87231 0.96737 1.22369 0.94349 1.02579 1.00110 0.93004 0.93294 0.95080 0.93173 0.91824 0.91870 0.77534 0.90956 0.90995 0.92150 0.90838 0.91086 0.90831 0.90299 0.83927 0.90764 0.90051 0.90578 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.53 37.16 0.32 -2.69 16 2 C -0.13 -2.97 5.37 -26.73 -0.14 -3.11 16 3 C 0.25 6.05 1.84 -69.09 -0.13 5.93 16 4 H 0.04 1.06 6.12 -51.93 -0.32 0.74 16 5 C -0.63 -16.90 8.92 -34.44 -0.31 -17.20 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.05 1.38 5.15 -17.82 -0.09 1.28 16 8 N -0.89 -26.01 13.70 55.43 0.76 -25.25 16 9 Si 1.03 25.08 26.56 -169.99 -4.51 20.56 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.34 6.34 56.52 0.36 -5.98 16 13 N -0.70 -14.06 5.03 -54.93 -0.28 -14.33 16 14 C 0.50 9.72 6.51 -10.98 -0.07 9.65 16 15 O -0.53 -12.33 13.64 -14.35 -0.20 -12.53 16 16 C 0.04 0.62 6.23 36.01 0.22 0.84 16 17 O -0.35 -5.42 9.53 -55.14 -0.53 -5.95 16 18 C 0.09 0.97 2.68 -26.61 -0.07 0.90 16 19 C -0.18 -1.75 5.70 -26.65 -0.15 -1.91 16 20 C 0.06 0.47 6.55 -3.83 -0.03 0.44 16 21 N -0.69 -5.47 6.87 -113.82 -0.78 -6.25 16 22 C 0.06 0.46 6.55 -3.84 -0.03 0.43 16 23 C -0.15 -1.49 5.73 -26.65 -0.15 -1.64 16 24 H 0.05 1.14 7.89 -51.93 -0.41 0.73 16 25 H 0.05 1.01 5.63 -51.93 -0.29 0.72 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.51 5.77 -51.93 -0.30 1.21 16 29 H 0.27 7.85 8.73 -40.82 -0.36 7.49 16 30 H 0.39 6.84 8.53 -40.82 -0.35 6.49 16 31 H 0.07 0.89 7.96 -51.93 -0.41 0.48 16 32 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 33 H 0.06 0.59 7.79 -51.93 -0.40 0.18 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.68 7.96 -51.93 -0.41 0.27 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.34 2.50 8.86 -39.29 -0.35 2.15 16 39 H 0.07 0.55 8.14 -51.94 -0.42 0.12 16 40 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -31.75 330.20 -8.27 -40.02 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.08 Total: 5.84 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -0.63 Total: -7.08 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.30 Total: -45.84 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.72 Total: -18.48 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -4.51 Total: 20.56 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.75 -8.27 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111758564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.915 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds