Wall clock time and date at job start Mon Mar 30 2020 21:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99908 * 2 1 4 4 C 1.53000 * 109.47585 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46726 * 65.00177 * 4 3 2 6 6 C 1.36944 * 119.99904 * 264.46261 * 5 4 3 7 7 H 1.08002 * 119.99416 * 138.59956 * 6 5 4 8 8 C 1.38808 * 119.99863 * 318.60108 * 6 5 4 9 9 N 1.31617 * 120.00131 * 341.66526 * 8 6 5 10 10 Si 1.86804 * 119.99766 * 161.66898 * 8 6 5 11 11 H 1.48493 * 109.47178 * 59.99867 * 10 8 6 12 12 H 1.48499 * 109.46743 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47050 * 299.99499 * 10 8 6 14 14 C 1.46495 * 119.99997 * 84.46275 * 5 4 3 15 15 H 1.09006 * 110.05470 * 0.03705 * 14 5 4 16 16 C 1.54265 * 110.03357 * 238.61925 * 14 5 4 17 17 C 1.54885 * 104.19662 * 264.32500 * 16 14 5 18 18 H 1.09001 * 110.75876 * 80.37338 * 17 16 14 19 19 C 1.53005 * 110.75824 * 203.55636 * 17 16 14 20 20 O 1.42894 * 109.47308 * 185.00165 * 19 17 16 21 21 C 1.42900 * 113.99859 * 180.02562 * 20 19 17 22 22 C 1.54886 * 102.74850 * 322.05570 * 17 16 14 23 23 C 1.53868 * 110.03301 * 121.45214 * 14 5 4 24 24 H 1.08998 * 110.03686 * 238.57104 * 23 14 5 25 25 O 1.42904 * 110.03573 * 359.95150 * 23 14 5 26 26 H 1.08991 * 109.47579 * 299.99567 * 1 2 3 27 27 H 1.09000 * 109.46795 * 60.00335 * 1 2 3 28 28 H 1.09004 * 109.46507 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47018 * 59.99908 * 3 2 1 30 30 H 1.08999 * 109.47330 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.46937 * 305.01070 * 4 3 2 32 32 H 1.08994 * 109.47696 * 185.00230 * 4 3 2 33 33 H 0.97003 * 120.00176 * 180.02562 * 9 8 6 34 34 H 1.09006 * 110.48369 * 23.00348 * 16 14 5 35 35 H 1.09002 * 110.48560 * 145.51047 * 16 14 5 36 36 H 1.09002 * 109.46856 * 305.00107 * 19 17 16 37 37 H 1.09005 * 109.46959 * 64.99707 * 19 17 16 38 38 H 1.09004 * 109.47086 * 60.00222 * 21 20 19 39 39 H 1.09004 * 109.47091 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47388 * 299.99926 * 21 20 19 41 41 H 1.08997 * 110.48843 * 279.26121 * 22 17 16 42 42 H 1.09010 * 110.48774 * 156.61986 * 22 17 16 43 43 H 0.96694 * 114.00198 * 179.30854 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2510 6 6 4.2071 -0.7848 -1.3023 7 1 3.8840 -1.3555 -2.1604 8 6 4.8558 -1.4185 -0.2514 9 7 5.5609 -0.7136 0.6078 10 14 4.7281 -3.2720 -0.0567 11 1 5.2739 -3.9357 -1.2677 12 1 5.5056 -3.6992 1.1342 13 1 3.3039 -3.6544 0.1181 14 6 4.1713 1.3865 -2.4475 15 1 3.9441 2.4293 -2.2255 16 6 3.2665 0.8802 -3.5897 17 6 4.1839 -0.0564 -4.4143 18 1 4.2585 -1.0367 -3.9436 19 6 3.6762 -0.1849 -5.8519 20 8 4.4713 -1.1422 -6.5542 21 6 4.0787 -1.3382 -7.9142 22 6 5.5473 0.6774 -4.3730 23 6 5.6214 1.2576 -2.9455 24 1 6.0981 2.2377 -2.9652 25 8 6.3547 0.3742 -2.0945 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9784 2.1766 0.0902 33 1 6.0145 -1.1565 1.3419 34 1 2.4183 0.3261 -3.1874 35 1 2.9209 1.7140 -4.2009 36 1 2.6368 -0.5131 -5.8421 37 1 3.7472 0.7820 -6.3501 38 1 4.1585 -0.3951 -8.4549 39 1 4.7308 -2.0786 -8.3775 40 1 3.0476 -1.6901 -7.9476 41 1 5.5721 1.4782 -5.1121 42 1 6.3638 -0.0247 -4.5424 43 1 7.2744 0.2432 -2.3625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698807708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:34:31 Heat of formation + Delta-G solvation = -104.961880 kcal Electronic energy + Delta-G solvation = -23381.944812 eV Core-core repulsion = 20042.922113 eV Total energy + Delta-G solvation = -3339.022698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 273.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.73158 -37.34899 -36.80889 -34.26814 -33.66649 -30.96418 -29.30589 -27.93670 -26.84737 -26.15298 -25.56715 -23.97749 -22.76481 -20.79410 -19.60279 -18.88923 -16.45630 -16.10086 -15.89149 -15.76499 -15.48517 -15.00256 -14.83026 -14.70581 -14.00858 -13.84406 -13.65463 -13.07189 -12.85043 -12.47242 -12.10513 -11.70940 -11.57907 -11.36978 -11.06445 -10.99989 -10.82226 -10.65434 -10.56632 -10.37165 -10.26724 -10.11516 -9.89802 -9.66288 -9.48266 -9.45872 -9.36689 -8.76957 -8.56509 -7.99899 -6.12742 -5.37385 -2.90752 3.62419 3.65014 3.70530 4.00760 4.72474 4.79427 5.16518 5.25078 5.33331 5.38308 5.40983 5.54508 5.66863 5.69513 5.76354 5.77822 5.82667 5.83990 5.88314 6.07189 6.10131 6.18923 6.21590 6.23776 6.39474 6.42117 6.54331 6.58377 6.72265 6.79944 6.83826 6.90715 7.08525 7.18987 7.42609 7.77885 8.13697 8.24142 8.90164 9.05435 9.56185 10.19227 10.77075 11.67967 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.007323 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.987797 B = 3822.786798 C = 4250.194067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.044 3.956 4 C 0.153 3.847 5 N -0.551 5.551 6 C -0.205 4.205 7 H 0.051 0.949 8 C 0.029 3.971 9 N -0.884 5.884 10 Si 0.881 3.119 11 H -0.287 1.287 12 H -0.297 1.297 13 H -0.287 1.287 14 C 0.176 3.824 15 H 0.050 0.950 16 C -0.124 4.124 17 C -0.082 4.082 18 H 0.098 0.902 19 C 0.069 3.931 20 O -0.388 6.388 21 C 0.032 3.968 22 C -0.140 4.140 23 C 0.087 3.913 24 H 0.024 0.976 25 O -0.477 6.477 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.022 0.978 30 H 0.026 0.974 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.243 0.757 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.035 0.965 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 5.181 -9.966 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C -0.035 4.035 4 C 0.026 3.974 5 N -0.269 5.269 6 C -0.335 4.335 7 H 0.069 0.931 8 C -0.170 4.170 9 N -0.527 5.527 10 Si 0.712 3.288 11 H -0.214 1.214 12 H -0.224 1.224 13 H -0.214 1.214 14 C 0.067 3.933 15 H 0.068 0.932 16 C -0.163 4.163 17 C -0.100 4.100 18 H 0.116 0.884 19 C -0.007 4.007 20 O -0.306 6.306 21 C -0.065 4.065 22 C -0.178 4.178 23 C 0.024 3.976 24 H 0.042 0.958 25 O -0.275 6.275 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.079 4.839 -9.378 11.712 hybrid contribution -0.035 -0.516 -0.547 0.753 sum -5.114 4.323 -9.925 11.973 Atomic orbital electron populations 1.22621 0.84398 1.01392 0.98303 1.88215 1.16413 1.27828 1.94801 1.23548 0.99401 0.83953 0.96638 1.20892 0.86653 0.96570 0.93253 1.43379 1.74869 1.04272 1.04383 1.18443 1.29028 0.81957 1.04066 0.93111 1.24973 0.95928 0.95920 1.00188 1.70008 1.32135 1.33785 1.16793 0.86744 0.77310 0.88079 0.76675 1.21362 1.22360 1.21352 1.21096 0.89915 0.93350 0.88953 0.93186 1.22810 0.98969 0.97515 0.97037 1.22086 0.95187 1.01419 0.91298 0.88378 1.22716 0.93816 0.90623 0.93542 1.87946 1.57400 1.62141 1.23154 1.22680 0.99722 1.00301 0.83800 1.23038 0.97911 0.98828 0.97999 1.22867 0.95577 0.90811 0.88332 0.95780 1.87501 1.23110 1.66180 1.50753 0.95609 0.95421 0.90797 0.95962 0.95607 0.88426 0.94704 0.94691 0.90848 0.93543 0.93879 0.94120 0.94608 0.90080 0.94482 0.93104 0.91864 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.79 10.44 -35.23 -0.37 -8.16 16 3 C 0.04 0.89 6.28 37.16 0.23 1.12 16 4 C 0.15 3.58 5.56 -4.04 -0.02 3.56 16 5 N -0.55 -13.19 1.93 -164.40 -0.32 -13.51 16 6 C -0.20 -5.49 6.35 -15.06 -0.10 -5.59 16 7 H 0.05 1.42 5.72 -52.49 -0.30 1.12 16 8 C 0.03 0.82 4.57 -17.43 -0.08 0.74 16 9 N -0.88 -25.72 11.48 55.49 0.64 -25.08 16 10 Si 0.88 22.87 29.59 -169.99 -5.03 17.84 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 13 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 14 C 0.18 3.58 3.48 -66.82 -0.23 3.35 16 15 H 0.05 0.96 7.90 -51.93 -0.41 0.55 16 16 C -0.12 -2.24 5.44 -25.08 -0.14 -2.38 16 17 C -0.08 -1.48 2.76 -88.63 -0.25 -1.72 16 18 H 0.10 2.14 6.23 -51.93 -0.32 1.82 16 19 C 0.07 1.07 5.38 37.16 0.20 1.27 16 20 O -0.39 -6.25 10.65 -35.23 -0.38 -6.62 16 21 C 0.03 0.37 11.01 101.05 1.11 1.48 16 22 C -0.14 -2.43 5.96 -25.07 -0.15 -2.58 16 23 C 0.09 1.70 4.14 -25.62 -0.11 1.59 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 O -0.48 -10.98 10.08 -35.23 -0.36 -11.33 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 2.65 5.79 -51.93 -0.30 2.35 16 32 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 33 H 0.24 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.07 1.47 7.99 -51.93 -0.41 1.05 16 35 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.56 8.00 -51.93 -0.42 0.14 16 38 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.78 7.95 -51.93 -0.41 0.37 16 42 H 0.06 1.14 8.06 -51.92 -0.42 0.72 16 43 H 0.33 6.48 9.09 45.56 0.41 6.90 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -31.38 340.00 -5.88 -37.26 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.78 Total: 2.04 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 1.59 Total: 2.45 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.32 Total: -38.59 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.10 Total: -26.12 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.84 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.38 -5.88 -37.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698807708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.704 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds