Wall clock time and date at job start Mon Mar 30 2020 21:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99908 * 2 1 4 4 C 1.53000 * 109.47585 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46726 * 65.00177 * 4 3 2 6 6 C 1.36944 * 119.99904 * 264.46261 * 5 4 3 7 7 H 1.08002 * 119.99416 * 138.59956 * 6 5 4 8 8 C 1.38808 * 119.99863 * 318.60108 * 6 5 4 9 9 N 1.31617 * 120.00131 * 341.66526 * 8 6 5 10 10 Si 1.86804 * 119.99766 * 161.66898 * 8 6 5 11 11 H 1.48493 * 109.47178 * 59.99867 * 10 8 6 12 12 H 1.48499 * 109.46743 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47050 * 299.99499 * 10 8 6 14 14 C 1.46495 * 119.99997 * 84.46275 * 5 4 3 15 15 H 1.09006 * 110.05470 * 0.03705 * 14 5 4 16 16 C 1.54265 * 110.03357 * 238.61925 * 14 5 4 17 17 C 1.54885 * 104.19662 * 264.32500 * 16 14 5 18 18 H 1.09001 * 110.75876 * 80.37338 * 17 16 14 19 19 C 1.53005 * 110.75824 * 203.55636 * 17 16 14 20 20 O 1.42894 * 109.47308 * 185.00165 * 19 17 16 21 21 C 1.42900 * 113.99859 * 180.02562 * 20 19 17 22 22 C 1.54886 * 102.74850 * 322.05570 * 17 16 14 23 23 C 1.53868 * 110.03301 * 121.45214 * 14 5 4 24 24 H 1.08998 * 110.03686 * 238.57104 * 23 14 5 25 25 O 1.42904 * 110.03573 * 359.95150 * 23 14 5 26 26 H 1.08991 * 109.47579 * 299.99567 * 1 2 3 27 27 H 1.09000 * 109.46795 * 60.00335 * 1 2 3 28 28 H 1.09004 * 109.46507 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47018 * 59.99908 * 3 2 1 30 30 H 1.08999 * 109.47330 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.46937 * 305.01070 * 4 3 2 32 32 H 1.08994 * 109.47696 * 185.00230 * 4 3 2 33 33 H 0.97003 * 120.00176 * 180.02562 * 9 8 6 34 34 H 1.09006 * 110.48369 * 23.00348 * 16 14 5 35 35 H 1.09002 * 110.48560 * 145.51047 * 16 14 5 36 36 H 1.09002 * 109.46856 * 305.00107 * 19 17 16 37 37 H 1.09005 * 109.46959 * 64.99707 * 19 17 16 38 38 H 1.09004 * 109.47086 * 60.00222 * 21 20 19 39 39 H 1.09004 * 109.47091 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47388 * 299.99926 * 21 20 19 41 41 H 1.08997 * 110.48843 * 279.26121 * 22 17 16 42 42 H 1.09010 * 110.48774 * 156.61986 * 22 17 16 43 43 H 0.96694 * 114.00198 * 179.30854 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2510 6 6 4.2071 -0.7848 -1.3023 7 1 3.8840 -1.3555 -2.1604 8 6 4.8558 -1.4185 -0.2514 9 7 5.5609 -0.7136 0.6078 10 14 4.7281 -3.2720 -0.0567 11 1 5.2739 -3.9357 -1.2677 12 1 5.5056 -3.6992 1.1342 13 1 3.3039 -3.6544 0.1181 14 6 4.1713 1.3865 -2.4475 15 1 3.9441 2.4293 -2.2255 16 6 3.2665 0.8802 -3.5897 17 6 4.1839 -0.0564 -4.4143 18 1 4.2585 -1.0367 -3.9436 19 6 3.6762 -0.1849 -5.8519 20 8 4.4713 -1.1422 -6.5542 21 6 4.0787 -1.3382 -7.9142 22 6 5.5473 0.6774 -4.3730 23 6 5.6214 1.2576 -2.9455 24 1 6.0981 2.2377 -2.9652 25 8 6.3547 0.3742 -2.0945 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9784 2.1766 0.0902 33 1 6.0145 -1.1565 1.3419 34 1 2.4183 0.3261 -3.1874 35 1 2.9209 1.7140 -4.2009 36 1 2.6368 -0.5131 -5.8421 37 1 3.7472 0.7820 -6.3501 38 1 4.1585 -0.3951 -8.4549 39 1 4.7308 -2.0786 -8.3775 40 1 3.0476 -1.6901 -7.9476 41 1 5.5721 1.4782 -5.1121 42 1 6.3638 -0.0247 -4.5424 43 1 7.2744 0.2432 -2.3625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698807708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:34:30 Heat of formation + Delta-G solvation = -127.907434 kcal Electronic energy + Delta-G solvation = -23382.939806 eV Core-core repulsion = 20042.922113 eV Total energy + Delta-G solvation = -3340.017692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 273.177 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22164 -38.70919 -38.26380 -36.07226 -35.27587 -32.93669 -30.80789 -29.46599 -28.37686 -27.36910 -27.02675 -25.50696 -24.38120 -22.53729 -21.05169 -20.57117 -18.19472 -17.60720 -17.38503 -17.19064 -16.81626 -16.57726 -16.32299 -16.20748 -15.70001 -15.50100 -14.98309 -14.64397 -14.62129 -13.76768 -13.63418 -13.30859 -13.01159 -12.83531 -12.71014 -12.56216 -12.44906 -12.39601 -12.20316 -12.11851 -11.92032 -11.65242 -11.55340 -11.38122 -11.20720 -11.08019 -10.56740 -10.29761 -10.19360 -10.05475 -8.09975 -7.46213 -5.00158 1.50128 1.51651 1.56900 2.71783 2.93631 3.25971 3.56593 3.70881 3.90763 3.92241 4.17146 4.21634 4.44024 4.46954 4.49477 4.55176 4.57659 4.61837 4.64881 4.67158 4.75063 4.79940 4.84588 4.85782 4.89329 4.92631 5.00626 5.07710 5.14065 5.21540 5.25235 5.31678 5.62998 5.67883 5.87014 6.06345 6.35583 6.63840 6.85511 7.45171 7.58270 8.20554 8.73968 9.54077 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.007323 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.987797 B = 3822.786798 C = 4250.194067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.055 3.945 4 C 0.151 3.849 5 N -0.562 5.562 6 C -0.176 4.176 7 H 0.036 0.964 8 C -0.017 4.017 9 N -0.907 5.907 10 Si 0.918 3.082 11 H -0.289 1.289 12 H -0.302 1.302 13 H -0.292 1.292 14 C 0.163 3.837 15 H 0.067 0.933 16 C -0.111 4.111 17 C -0.081 4.081 18 H 0.050 0.950 19 C 0.076 3.924 20 O -0.420 6.420 21 C 0.025 3.975 22 C -0.126 4.126 23 C 0.081 3.919 24 H 0.043 0.957 25 O -0.514 6.514 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.233 0.767 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 6.802 -12.128 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.024 4.024 4 C 0.024 3.976 5 N -0.281 5.281 6 C -0.308 4.308 7 H 0.053 0.947 8 C -0.213 4.213 9 N -0.553 5.553 10 Si 0.750 3.250 11 H -0.216 1.216 12 H -0.229 1.229 13 H -0.220 1.220 14 C 0.056 3.944 15 H 0.085 0.915 16 C -0.150 4.150 17 C -0.100 4.100 18 H 0.069 0.931 19 C 0.000 4.000 20 O -0.340 6.340 21 C -0.071 4.071 22 C -0.164 4.164 23 C 0.019 3.981 24 H 0.060 0.940 25 O -0.315 6.315 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.389 6.467 -11.572 14.715 hybrid contribution 0.305 -0.979 0.041 1.026 sum -6.084 5.488 -11.531 14.145 Atomic orbital electron populations 1.22801 0.81624 1.02474 1.00044 1.88133 1.19573 1.28921 1.95189 1.23296 0.96867 0.83824 0.98374 1.20790 0.89189 0.95860 0.91726 1.43459 1.75315 1.03762 1.05612 1.18348 1.26345 0.83495 1.02593 0.94668 1.25332 0.97117 0.97724 1.01104 1.70117 1.33905 1.33994 1.17317 0.86138 0.76590 0.86167 0.76084 1.21588 1.22886 1.21971 1.21396 0.91089 0.93788 0.88169 0.91454 1.22654 0.97518 0.98332 0.96502 1.21941 0.95892 0.99019 0.93123 0.93145 1.22599 0.93676 0.91909 0.91816 1.87897 1.58109 1.62550 1.25406 1.22904 1.00563 1.01769 0.81818 1.22916 0.97065 0.99199 0.97262 1.22988 0.94814 0.91282 0.89012 0.93951 1.87425 1.24313 1.67272 1.52454 0.93609 0.93747 0.90199 0.93791 0.93961 0.92491 0.93980 0.95802 0.93108 0.89719 0.93347 0.91467 0.92719 0.88970 0.93553 0.90015 0.92986 0.81225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.22 10.44 -148.98 -1.56 -18.77 16 3 C 0.06 2.14 6.28 71.98 0.45 2.59 16 4 C 0.15 7.05 5.56 86.38 0.48 7.53 16 5 N -0.56 -26.89 1.93 -674.03 -1.30 -28.19 16 6 C -0.18 -9.64 6.35 84.03 0.53 -9.11 16 7 H 0.04 2.04 5.72 -2.91 -0.02 2.03 16 8 C -0.02 -0.98 4.57 84.86 0.39 -0.60 16 9 N -0.91 -54.54 11.48 21.65 0.25 -54.29 16 10 Si 0.92 48.43 29.59 68.60 2.03 50.46 16 11 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 12 H -0.30 -16.03 7.11 99.48 0.71 -15.33 16 13 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 14 C 0.16 6.38 3.48 45.71 0.16 6.54 16 15 H 0.07 2.38 7.90 -2.38 -0.02 2.36 16 16 C -0.11 -3.75 5.44 31.67 0.17 -3.58 16 17 C -0.08 -2.82 2.76 -9.50 -0.03 -2.85 16 18 H 0.05 2.24 6.23 -2.39 -0.01 2.23 16 19 C 0.08 2.13 5.38 71.98 0.39 2.52 16 20 O -0.42 -12.71 10.65 -148.98 -1.59 -14.30 16 21 C 0.03 0.52 11.01 113.37 1.25 1.77 16 22 C -0.13 -4.14 5.96 31.67 0.19 -3.95 16 23 C 0.08 3.04 4.14 31.32 0.13 3.17 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 O -0.51 -23.84 10.08 -148.98 -1.50 -25.35 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 3.17 5.79 -2.39 -0.01 3.16 16 32 H 0.04 1.85 8.05 -2.39 -0.02 1.83 16 33 H 0.23 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.05 1.96 7.99 -2.38 -0.02 1.94 16 35 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.53 8.00 -2.38 -0.02 1.52 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 2.19 7.95 -2.39 -0.02 2.17 16 42 H 0.05 1.82 8.06 -2.38 -0.02 1.80 16 43 H 0.34 13.63 9.09 -74.06 -0.67 12.96 16 Total: -1.00 -69.69 340.00 2.00 -67.69 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.30 Total: 16.62 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.36 Total: 6.12 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.05 Total: -82.48 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -4.64 Total: -58.41 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -69.69 2.00 -67.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698807708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.219 kcal (2) G-P(sol) polarization free energy of solvation -69.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds