Wall clock time and date at job start Mon Mar 30 2020 21:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46785 * 2 1 4 4 H 1.09001 * 109.46709 * 55.00098 * 3 2 1 5 5 N 1.46896 * 109.46846 * 294.99693 * 3 2 1 6 6 C 1.52999 * 109.46855 * 174.99821 * 3 2 1 7 7 H 1.09001 * 109.46761 * 60.00360 * 6 3 2 8 8 C 1.50696 * 109.47522 * 299.99943 * 6 3 2 9 9 C 1.38674 * 120.41595 * 301.63801 * 8 6 3 10 10 C 1.38628 * 118.41813 * 180.02562 * 9 8 6 11 11 C 1.38223 * 119.16429 * 0.02562 * 10 9 8 12 12 N 1.31855 * 120.76170 * 0.02562 * 11 10 9 13 13 C 1.31886 * 121.72795 * 359.70463 * 12 11 10 14 14 N 1.46503 * 109.46897 * 179.97438 * 6 3 2 15 15 C 1.36930 * 120.00436 * 236.18408 * 14 6 3 16 16 H 1.08005 * 119.99916 * 8.65185 * 15 14 6 17 17 C 1.38806 * 120.00069 * 188.65615 * 15 14 6 18 18 N 1.31614 * 120.00306 * 14.85883 * 17 15 14 19 19 Si 1.86810 * 119.99974 * 194.86077 * 17 15 14 20 20 H 1.48500 * 109.46931 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47014 * 119.99642 * 19 17 15 22 22 H 1.48506 * 109.46895 * 239.99904 * 19 17 15 23 23 C 1.46502 * 119.99554 * 56.18539 * 14 6 3 24 24 C 1.47200 * 109.47026 * 94.47729 * 23 14 6 25 25 N 6.16376 * 126.08141 * 39.41148 * 2 1 3 26 26 H 1.09007 * 109.46914 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47261 * 299.99784 * 1 2 3 28 28 H 1.09000 * 109.47248 * 60.00194 * 1 2 3 29 29 H 1.08995 * 109.47260 * 240.00115 * 2 1 3 30 30 H 1.09000 * 109.47248 * 119.99806 * 2 1 3 31 31 H 1.00907 * 110.99815 * 56.05051 * 5 3 2 32 32 H 1.00897 * 110.99646 * 179.97438 * 5 3 2 33 33 H 1.07995 * 120.79396 * 359.97438 * 9 8 6 34 34 H 1.08004 * 120.42157 * 180.02562 * 10 9 8 35 35 H 1.08003 * 119.62439 * 179.97438 * 11 10 9 36 36 H 1.08002 * 119.62337 * 180.31516 * 13 12 11 37 37 H 0.96998 * 120.00036 * 180.02562 * 18 17 15 38 38 H 1.09005 * 109.46987 * 214.47213 * 23 14 6 39 39 H 1.09000 * 109.47105 * 334.47204 * 23 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8419 5 7 1.6513 2.0993 -1.2552 6 6 3.5647 1.4445 0.1258 7 1 3.9993 0.9055 -0.7161 8 6 3.9635 0.7708 1.4134 9 6 3.5040 1.2531 2.6297 10 6 3.8971 0.6019 3.7886 11 6 4.7284 -0.4984 3.6942 12 7 5.1468 -0.9287 2.5201 13 6 4.7890 -0.3372 1.3969 14 7 4.0531 2.8257 0.1252 15 6 4.9821 3.2231 -0.7989 16 1 5.2515 2.5646 -1.6115 17 6 5.5777 4.4723 -0.6913 18 7 5.4825 5.1523 0.4315 19 14 6.5144 5.1884 -2.1403 20 1 6.4747 4.2328 -3.2763 21 1 5.8879 6.4710 -2.5497 22 1 7.9257 5.4302 -1.7466 23 6 3.5473 3.7818 1.1133 24 6 4.4576 3.8202 2.2695 25 7 5.1600 3.8487 3.1626 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.6527 2.0540 -1.3929 32 1 1.9764 3.0541 -1.2794 33 1 2.8561 2.1160 2.6731 34 1 3.5581 0.9498 4.7533 35 1 5.0396 -1.0111 4.5923 36 1 5.1478 -0.7215 0.4534 37 1 5.8984 6.0254 0.5065 38 1 3.4895 4.7730 0.6634 39 1 2.5549 3.4736 1.4423 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043345877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:35:57 Heat of formation + Delta-G solvation = 92.336812 kcal Electronic energy + Delta-G solvation = -22089.764314 eV Core-core repulsion = 19033.472889 eV Total energy + Delta-G solvation = -3056.291425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.00635 -37.64758 -35.51082 -34.02642 -32.49092 -31.45448 -30.84984 -30.12221 -27.69512 -26.68644 -24.10426 -23.07858 -22.62060 -21.10619 -19.32401 -17.65424 -16.78380 -16.13082 -15.90378 -15.61003 -15.27322 -15.10320 -14.18162 -13.99327 -13.58154 -13.31249 -13.01968 -12.95590 -12.79202 -12.72020 -12.10489 -11.86398 -11.60850 -11.32074 -11.11576 -11.08332 -10.98578 -10.79421 -10.65524 -10.52084 -10.21625 -10.04240 -9.97419 -9.19915 -9.13272 -8.77114 -8.49070 -8.16257 -7.34609 -6.00338 -3.40036 1.59326 1.77340 3.29511 3.38172 3.40205 4.07242 4.29681 4.37955 4.54500 4.80146 4.93112 5.07590 5.20973 5.22367 5.27213 5.32255 5.40428 5.49364 5.53908 5.61933 5.71969 5.76149 5.88344 5.97856 6.09519 6.13775 6.18192 6.34458 6.39052 6.48489 6.54903 6.59504 6.84940 7.06623 7.18152 7.57304 7.66677 8.00075 8.00731 8.40942 8.89654 9.28013 9.51509 9.91375 11.04521 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.008268 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.076588 B = 3385.852111 C = 4295.020053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.086 3.914 4 H 0.029 0.971 5 N -0.837 5.837 6 C 0.217 3.783 7 H 0.089 0.911 8 C -0.124 4.124 9 C -0.066 4.066 10 C -0.167 4.167 11 C 0.079 3.921 12 N -0.489 5.489 13 C 0.099 3.901 14 N -0.570 5.570 15 C -0.246 4.246 16 H 0.087 0.913 17 C -0.002 4.002 18 N -0.913 5.913 19 Si 0.918 3.082 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.293 1.293 23 C 0.253 3.747 24 C 0.255 3.745 25 N -0.511 5.511 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.327 0.673 32 H 0.355 0.645 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.259 0.741 38 H 0.121 0.879 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.848 -7.273 -0.038 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.027 4.027 4 H 0.047 0.953 5 N -0.369 5.369 6 C 0.108 3.892 7 H 0.107 0.893 8 C -0.130 4.130 9 C -0.093 4.093 10 C -0.187 4.187 11 C -0.079 4.079 12 N -0.197 5.197 13 C -0.059 4.059 14 N -0.288 5.288 15 C -0.374 4.374 16 H 0.105 0.895 17 C -0.199 4.199 18 N -0.559 5.559 19 Si 0.748 3.252 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.220 1.220 23 C 0.124 3.876 24 C -0.063 4.063 25 N -0.193 5.193 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.171 0.829 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.713 -8.301 0.842 12.064 hybrid contribution -0.428 2.019 -0.128 2.068 sum -9.140 -6.282 0.714 11.114 Atomic orbital electron populations 1.21773 0.96465 1.01235 1.01350 1.21559 0.95225 0.96589 1.02229 1.21705 0.96166 0.94003 0.90815 0.95299 1.58600 1.17610 1.24538 1.36173 1.19475 0.91921 0.85622 0.92160 0.89315 1.21738 0.97821 0.95663 0.97730 1.21482 0.97927 0.97789 0.92082 1.21987 1.00150 0.97459 0.99087 1.22498 0.95125 0.94739 0.95507 1.67584 1.21967 1.31486 0.98681 1.22553 0.94467 0.92630 0.96251 1.44355 1.47877 1.03491 1.33092 1.19481 1.16290 0.99677 1.01969 0.89533 1.24866 0.99395 0.98341 0.97302 1.69719 1.48292 1.14720 1.23131 0.85960 0.78880 0.78915 0.81473 1.20105 1.21418 1.22014 1.18671 0.88334 0.97432 0.83136 1.30120 0.93911 0.90317 0.91957 1.80837 1.10959 1.11514 1.15958 0.93115 0.93314 0.92511 0.91170 0.92020 0.86061 0.82929 0.85588 0.85841 0.83790 0.83407 0.92942 0.86143 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.68 37.16 0.36 -1.20 16 2 C -0.12 -1.46 5.46 -26.73 -0.15 -1.61 16 3 C 0.09 1.22 2.07 -67.71 -0.14 1.08 16 4 H 0.03 0.42 5.82 -51.93 -0.30 0.11 16 5 N -0.84 -11.47 9.24 -4.67 -0.04 -11.51 16 6 C 0.22 3.74 2.23 -69.08 -0.15 3.59 16 7 H 0.09 1.60 7.54 -51.93 -0.39 1.21 16 8 C -0.12 -2.18 3.52 -104.48 -0.37 -2.55 16 9 C -0.07 -1.14 6.69 -39.28 -0.26 -1.40 16 10 C -0.17 -2.71 10.11 -39.44 -0.40 -3.11 16 11 C 0.08 1.28 11.18 -17.55 -0.20 1.09 16 12 N -0.49 -8.79 10.36 -13.25 -0.14 -8.92 16 13 C 0.10 1.74 10.83 -17.55 -0.19 1.55 16 14 N -0.57 -11.63 1.74 -170.29 -0.30 -11.92 16 15 C -0.25 -5.78 9.74 -15.06 -0.15 -5.93 16 16 H 0.09 2.03 7.71 -52.48 -0.40 1.63 16 17 C 0.00 -0.06 5.16 -17.43 -0.09 -0.15 16 18 N -0.91 -23.84 8.41 55.49 0.47 -23.38 16 19 Si 0.92 20.45 29.58 -169.99 -5.03 15.42 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.25 5.11 4.57 -6.83 -0.03 5.08 16 24 C 0.25 5.93 10.04 -20.74 -0.21 5.72 16 25 N -0.51 -12.96 18.53 42.18 0.78 -12.18 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.55 6.68 -51.93 -0.35 0.20 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.81 7.05 -51.93 -0.37 0.45 16 31 H 0.33 3.73 7.25 -39.29 -0.28 3.45 16 32 H 0.36 5.38 8.41 -39.29 -0.33 5.05 16 33 H 0.13 2.12 4.79 -52.49 -0.25 1.86 16 34 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 35 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.15 2.35 7.95 -52.49 -0.42 1.94 16 37 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.12 2.64 6.29 -51.93 -0.33 2.31 16 39 H 0.05 0.79 4.97 -51.93 -0.26 0.53 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -28.63 313.78 -6.43 -35.06 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.93 Total: 10.54 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.97 Total: 2.16 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: 0.77 Total: -67.92 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.63 -6.43 -35.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043345877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.397 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds