Wall clock time and date at job start Mon Mar 30 2020 21:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46733 * 2 1 4 4 C 1.53000 * 109.47233 * 240.00658 * 2 1 3 5 5 C 1.52997 * 109.47060 * 299.99657 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 8 8 N 1.46504 * 109.46883 * 180.02562 * 6 5 4 9 9 S 1.65592 * 120.00236 * 95.00207 * 8 6 5 10 10 O 1.42097 * 104.27793 * 181.06878 * 9 8 6 11 11 O 1.42104 * 104.27488 * 308.92280 * 9 8 6 12 12 C 1.81398 * 104.45388 * 64.99297 * 9 8 6 13 13 C 1.50696 * 109.47334 * 180.02562 * 12 9 8 14 14 H 1.08000 * 120.00241 * 0.02562 * 13 12 9 15 15 C 1.37877 * 120.00085 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99990 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00161 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47133 * 60.00079 * 17 15 13 19 19 H 1.48503 * 109.47246 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47268 * 299.99902 * 17 15 13 21 21 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 22 22 C 1.52996 * 109.47346 * 120.00200 * 2 1 3 23 23 H 1.08992 * 109.47554 * 180.02562 * 22 2 1 24 24 C 1.52997 * 109.46975 * 300.00405 * 22 2 1 25 25 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47662 * 299.99768 * 1 2 3 27 27 H 1.09002 * 109.47075 * 60.00274 * 1 2 3 28 28 H 1.09002 * 109.47398 * 59.99826 * 4 2 1 29 29 H 1.09001 * 109.47194 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 31 31 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 32 32 H 0.97000 * 119.99461 * 274.99349 * 8 6 5 33 33 H 1.09004 * 109.46999 * 300.00168 * 12 9 8 34 34 H 1.09001 * 109.47167 * 60.00375 * 12 9 8 35 35 H 0.96996 * 119.99838 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47045 * 180.02562 * 21 6 5 37 37 H 1.09001 * 109.47375 * 59.99966 * 21 6 5 38 38 H 1.09001 * 109.47375 * 59.99630 * 24 22 2 39 39 H 1.09002 * 109.47045 * 179.97438 * 24 22 2 40 40 H 1.09000 * 109.47140 * 299.99612 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5301 -2.1636 -1.2494 6 6 2.0401 -2.8849 -0.0002 7 1 3.1301 -2.8849 -0.0001 8 7 1.5523 -4.2664 -0.0006 9 16 2.5023 -5.4797 -0.6067 10 8 1.7077 -6.6495 -0.4678 11 8 2.8960 -5.0095 -1.8886 12 6 3.9275 -5.5415 0.5139 13 6 4.8765 -6.6208 0.0607 14 1 4.6457 -7.2104 -0.8142 15 6 6.0395 -6.8556 0.7630 16 7 6.3209 -6.1373 1.8282 17 14 7.2156 -8.1940 0.2016 18 1 7.6825 -7.8966 -1.1764 19 1 8.3823 -8.2444 1.1189 20 1 6.5173 -9.5044 0.2157 21 6 1.5301 -2.1638 1.2491 22 6 2.0401 -0.7213 1.2492 23 1 3.1300 -0.7209 1.2494 24 6 1.5300 -0.0001 2.4984 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2072 -2.1393 29 1 3.1301 -0.7215 -1.2491 30 1 0.4402 -2.1637 -1.2494 31 1 1.8938 -2.6776 -2.1392 32 1 0.6729 -4.4702 0.3542 33 1 4.4400 -4.5795 0.5032 34 1 3.5851 -5.7596 1.5255 35 1 7.1393 -6.3023 2.3220 36 1 1.8938 -2.6774 2.1391 37 1 0.4400 -2.1638 1.2491 38 1 0.4400 -0.0001 2.4984 39 1 1.8930 -0.5142 3.3884 40 1 1.8933 1.0276 2.4985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:35:57 Heat of formation + Delta-G solvation = -111.825350 kcal Electronic energy + Delta-G solvation = -20514.583447 eV Core-core repulsion = 17454.871424 eV Total energy + Delta-G solvation = -3059.712023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.58722 -36.08910 -35.01123 -34.70901 -33.34108 -32.19438 -29.71772 -29.01323 -27.28943 -25.52823 -23.51528 -22.13820 -21.20342 -19.06039 -18.15638 -17.13341 -16.24579 -15.97969 -15.50550 -15.33301 -15.00845 -14.40488 -14.13898 -13.94491 -13.59164 -12.91835 -12.64619 -12.50674 -12.26750 -12.04667 -11.99356 -11.80112 -11.58670 -11.44048 -11.42161 -11.12590 -11.04706 -10.95886 -10.88146 -10.62810 -10.59506 -10.23565 -10.14127 -10.01587 -9.83908 -9.37742 -8.73864 -8.69250 -6.32902 -4.43436 1.37939 3.23951 3.26074 3.31000 3.63135 4.24359 4.64972 4.67832 4.76402 4.83493 5.00988 5.07960 5.17319 5.27684 5.32778 5.37828 5.47170 5.53893 5.59282 5.61950 5.73465 5.81898 5.87536 5.91975 5.95370 6.01300 6.09355 6.22154 6.30739 6.32962 6.46527 6.55341 6.62008 6.68034 6.81702 7.44703 7.50309 7.76012 8.58580 9.24212 10.78853 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024386 B = 0.005180 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.922721 B = 5404.085942 C = 5932.128087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.139 4.139 6 C 0.157 3.843 7 H 0.084 0.916 8 N -1.127 6.127 9 S 2.583 3.417 10 O -0.984 6.984 11 O -0.980 6.980 12 C -0.420 4.420 13 C -0.535 4.535 14 H 0.068 0.932 15 C 0.077 3.923 16 N -0.879 5.879 17 Si 0.904 3.096 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.122 4.122 22 C -0.087 4.087 23 H 0.074 0.926 24 C -0.147 4.147 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.407 0.593 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.268 0.732 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.349 13.213 0.373 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.178 4.178 6 C 0.050 3.950 7 H 0.102 0.898 8 N -0.881 5.881 9 S 2.683 3.317 10 O -0.975 6.975 11 O -0.970 6.970 12 C -0.556 4.556 13 C -0.574 4.574 14 H 0.086 0.914 15 C -0.130 4.130 16 N -0.515 5.515 17 Si 0.729 3.271 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.160 4.160 22 C -0.106 4.106 23 H 0.093 0.907 24 C -0.205 4.205 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.239 0.761 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.282 12.768 -0.353 15.789 hybrid contribution 0.600 -0.459 0.571 0.947 sum -8.682 12.309 0.218 15.064 Atomic orbital electron populations 1.21996 0.95601 1.02231 1.01134 1.21146 0.95842 0.98894 0.94704 0.91451 1.21556 1.01007 0.95411 0.97243 1.22123 1.01237 0.95315 0.99130 1.20664 0.98714 0.80868 0.94793 0.89784 1.55948 1.30982 1.19511 1.81698 1.05841 0.76811 0.72272 0.76802 1.93479 1.68630 1.47649 1.87751 1.93471 1.84138 1.80335 1.39076 1.27722 1.11514 1.06093 1.10237 1.20290 1.05392 1.17841 1.13871 0.91354 1.24921 0.97468 0.96283 0.94287 1.69943 1.25419 1.39147 1.17015 0.86446 0.79824 0.81756 0.79033 1.19419 1.20716 1.19424 1.21946 1.01290 0.94950 0.97858 1.21126 1.00660 0.94343 0.94515 0.90735 1.21870 1.01210 0.99981 0.97406 0.91895 0.92740 0.93158 0.91910 0.91597 0.91588 0.90235 0.76147 0.89970 0.89715 0.92195 0.91023 0.91248 0.92513 0.92643 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.15 37.16 0.30 -1.07 16 2 C -0.09 -0.86 2.72 -90.62 -0.25 -1.10 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -1.28 5.45 -26.73 -0.15 -1.42 16 5 C -0.14 -1.86 5.25 -26.73 -0.14 -2.00 16 6 C 0.16 2.26 2.56 -67.93 -0.17 2.09 16 7 H 0.08 1.30 7.15 -51.93 -0.37 0.93 16 8 N -1.13 -18.07 5.36 -4.89 -0.03 -18.10 16 9 S 2.58 54.94 5.30 -107.50 -0.57 54.37 16 10 O -0.98 -23.54 18.08 -57.54 -1.04 -24.58 16 11 O -0.98 -23.01 17.11 -57.54 -0.98 -23.99 16 12 C -0.42 -10.12 5.72 36.00 0.21 -9.91 16 13 C -0.53 -14.82 9.13 -34.44 -0.31 -15.14 16 14 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 15 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 16 N -0.88 -24.79 13.29 55.43 0.74 -24.06 16 17 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 C -0.12 -1.43 4.46 -26.73 -0.12 -1.55 16 22 C -0.09 -0.91 2.50 -90.62 -0.23 -1.14 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 25 H 0.06 0.60 4.81 -51.93 -0.25 0.35 16 26 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.81 6.43 -51.93 -0.33 0.47 16 31 H 0.08 1.25 7.42 -51.93 -0.39 0.87 16 32 H 0.41 5.58 8.80 -34.47 -0.30 5.28 16 33 H 0.08 1.95 7.44 -51.92 -0.39 1.56 16 34 H 0.08 2.04 8.14 -51.92 -0.42 1.61 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 38 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -32.50 320.85 -9.07 -41.57 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.38 Total: 4.19 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: -0.63 Total: -30.23 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.71 Total: -42.15 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -2.02 Total: -48.57 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.57 Total: 54.37 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.50 -9.07 -41.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.257 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds