Wall clock time and date at job start Mon Mar 30 2020 21:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35894 * 117.00102 * 2 1 4 4 C 1.38754 * 120.05524 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94678 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05153 * 359.75125 * 5 4 3 7 7 C 1.38251 * 120.11273 * 0.50603 * 6 5 4 8 8 C 1.50697 * 119.97215 * 179.77054 * 7 6 5 9 9 H 1.09000 * 109.47060 * 159.72072 * 8 7 6 10 10 O 1.42903 * 109.47137 * 39.72044 * 8 7 6 11 11 C 1.53001 * 109.46848 * 279.72419 * 8 7 6 12 12 N 1.46503 * 109.46995 * 184.99995 * 11 8 7 13 13 C 1.36930 * 120.00204 * 270.00056 * 12 11 8 14 14 H 1.08004 * 120.00180 * 343.28652 * 13 12 11 15 15 C 1.38809 * 120.00391 * 163.28437 * 13 12 11 16 16 N 1.31620 * 119.99994 * 337.24213 * 15 13 12 17 17 Si 1.86800 * 120.00108 * 157.23356 * 15 13 12 18 18 H 1.48501 * 109.47051 * 89.65206 * 17 15 13 19 19 H 1.48505 * 109.47346 * 209.65075 * 17 15 13 20 20 H 1.48500 * 109.47423 * 329.65175 * 17 15 13 21 21 C 1.46502 * 119.99800 * 89.99959 * 12 11 8 22 22 C 1.47205 * 109.47011 * 275.62021 * 21 12 11 23 23 N 6.48958 * 140.34917 * 352.95262 * 3 1 2 24 24 C 1.38164 * 120.05177 * 359.49270 * 7 6 5 25 25 H 1.09006 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47461 * 299.99669 * 1 2 3 27 27 H 1.09002 * 109.47602 * 60.00489 * 1 2 3 28 28 H 1.08003 * 120.02598 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.97589 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.94407 * 180.28034 * 6 5 4 31 31 H 0.96693 * 114.00254 * 300.00317 * 10 8 7 32 32 H 1.08994 * 109.47466 * 65.00159 * 11 8 7 33 33 H 1.08996 * 109.46868 * 304.99789 * 11 8 7 34 34 H 0.97000 * 120.00096 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47302 * 35.62277 * 21 12 11 36 36 H 1.08996 * 109.47183 * 155.62584 * 21 12 11 37 37 H 1.08003 * 120.02640 * 180.28106 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6757 0.0063 7 6 4.0560 2.5170 0.0004 8 6 5.5608 2.5981 0.0008 9 1 5.9754 1.6532 0.3522 10 8 5.9807 3.6541 0.8672 11 6 6.0569 2.8760 -1.4195 12 7 7.5213 2.8365 -1.4418 13 6 8.2406 3.9789 -1.2128 14 1 7.7595 4.9433 -1.2836 15 6 9.5880 3.8977 -0.8895 16 7 10.0745 2.7906 -0.3698 17 14 10.7110 5.3594 -1.1921 18 1 10.7227 6.2318 0.0095 19 1 12.0884 4.8770 -1.4670 20 1 10.2148 6.1315 -2.3596 21 6 8.2160 1.5747 -1.7091 22 6 8.3420 0.8094 -0.4579 23 7 8.4391 0.2188 0.5081 24 6 3.4311 1.2847 -0.0001 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2128 2.3203 0.0014 29 1 1.3340 4.5113 0.0019 30 1 3.7922 4.6380 0.0113 31 1 5.6480 4.5261 0.6144 32 1 5.7152 3.8610 -1.7376 33 1 5.6627 2.1185 -2.0968 34 1 11.0162 2.7336 -0.1442 35 1 7.6472 0.9934 -2.4348 36 1 9.2083 1.7838 -2.1085 37 1 4.0206 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162973708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:39:35 Heat of formation + Delta-G solvation = -4.553570 kcal Electronic energy + Delta-G solvation = -21146.256076 eV Core-core repulsion = 17890.325844 eV Total energy + Delta-G solvation = -3255.930232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16771 -38.27788 -36.62068 -35.37933 -34.06306 -31.80272 -31.09898 -30.13791 -28.03501 -27.36927 -26.54755 -23.87281 -22.52216 -21.49876 -20.44203 -18.02804 -17.47407 -16.32250 -16.18190 -15.90805 -15.82079 -15.73675 -14.85728 -14.54742 -14.01856 -13.71614 -13.54272 -13.43582 -12.92441 -12.73021 -12.32375 -12.12131 -11.75185 -11.61670 -11.41411 -11.37079 -11.15497 -10.98960 -10.85098 -10.64527 -10.47530 -10.13462 -10.09083 -9.88760 -9.48721 -8.82435 -8.55990 -8.14897 -7.13160 -5.91078 -3.26728 1.38969 1.52430 3.21359 3.36547 3.44272 3.45527 3.82628 4.15256 4.41306 4.53153 4.75786 4.84236 4.97489 4.98952 5.11611 5.14944 5.27297 5.29291 5.39135 5.46290 5.58160 5.63657 5.75375 5.88548 5.99527 6.06864 6.29815 6.34261 6.45918 6.50672 6.63284 6.75664 6.94191 7.02145 7.40219 7.68578 8.14667 8.35758 8.98645 9.23680 9.65014 10.08356 11.18001 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.004629 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.433196 B = 6046.919728 C = 6705.167358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.219 4.219 5 C -0.079 4.079 6 C -0.150 4.150 7 C -0.062 4.062 8 C 0.118 3.882 9 H 0.098 0.902 10 O -0.530 6.530 11 C 0.122 3.878 12 N -0.571 5.571 13 C -0.254 4.254 14 H 0.079 0.921 15 C 0.005 3.995 16 N -0.899 5.899 17 Si 0.906 3.094 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.255 3.745 22 C 0.246 3.754 23 N -0.505 5.505 24 C -0.145 4.145 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.361 0.639 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.258 0.742 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.679 -0.253 -4.286 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.238 4.238 5 C -0.098 4.098 6 C -0.168 4.168 7 C -0.063 4.063 8 C 0.056 3.944 9 H 0.116 0.884 10 O -0.333 6.333 11 C -0.006 4.006 12 N -0.290 5.290 13 C -0.382 4.382 14 H 0.097 0.903 15 C -0.194 4.194 16 N -0.542 5.542 17 Si 0.735 3.265 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.204 1.204 21 C 0.125 3.875 22 C -0.073 4.073 23 N -0.186 5.186 24 C -0.163 4.163 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.207 0.793 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.938 -1.818 -2.545 17.225 hybrid contribution 0.047 1.564 -0.372 1.608 sum -16.892 -0.254 -2.917 17.144 Atomic orbital electron populations 1.23009 0.78785 1.03659 1.01170 1.86078 1.21065 1.27207 1.88903 1.18993 0.92240 0.83985 0.96738 1.21127 0.99584 0.92504 1.10556 1.20853 0.94505 0.96761 0.97632 1.20833 0.93597 0.98182 1.04198 1.20821 0.98075 0.92315 0.95128 1.21844 0.85683 0.92447 0.94472 0.88391 1.86763 1.76037 1.17438 1.53103 1.21712 0.85377 1.00473 0.93032 1.44211 0.99286 1.05218 1.80309 1.19149 0.91288 0.85240 1.42566 0.90318 1.24859 0.98446 0.97319 0.98771 1.69933 1.14051 1.27305 1.42933 0.86253 0.80155 0.81982 0.78100 1.21558 1.21609 1.20439 1.18397 0.99872 0.83544 0.85708 1.30540 0.90292 0.90551 0.95917 1.80841 1.11655 1.14236 1.11838 1.20293 0.91150 0.98437 1.06461 0.88467 0.92855 0.92777 0.85929 0.86009 0.85908 0.79340 0.92127 0.92668 0.93150 0.92300 0.86851 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.15 10.50 -19.41 -0.20 -4.36 16 3 C 0.13 1.75 6.69 -39.22 -0.26 1.49 16 4 C -0.22 -2.63 9.04 -39.43 -0.36 -2.99 16 5 C -0.08 -0.94 10.04 -39.60 -0.40 -1.34 16 6 C -0.15 -2.03 9.32 -39.56 -0.37 -2.39 16 7 C -0.06 -0.97 4.97 -104.65 -0.52 -1.49 16 8 C 0.12 2.19 3.36 -27.88 -0.09 2.10 16 9 H 0.10 2.13 6.87 -51.93 -0.36 1.77 16 10 O -0.53 -10.82 12.66 -35.23 -0.45 -11.27 16 11 C 0.12 2.19 5.36 -4.04 -0.02 2.17 16 12 N -0.57 -12.51 2.48 -176.57 -0.44 -12.95 16 13 C -0.25 -6.20 9.16 -15.06 -0.14 -6.34 16 14 H 0.08 1.87 7.91 -52.48 -0.41 1.45 16 15 C 0.00 0.12 4.84 -17.43 -0.08 0.04 16 16 N -0.90 -24.71 9.52 55.49 0.53 -24.18 16 17 Si 0.91 20.60 29.61 -169.99 -5.03 15.57 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.25 5.40 5.45 -6.83 -0.04 5.36 16 22 C 0.25 5.91 12.49 -20.74 -0.26 5.66 16 23 N -0.50 -13.16 18.54 42.17 0.78 -12.38 16 24 C -0.14 -2.25 9.61 -39.43 -0.38 -2.63 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.12 1.14 6.30 -52.48 -0.33 0.81 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.46 6.77 -52.49 -0.36 1.11 16 31 H 0.36 5.91 7.49 45.56 0.34 6.25 16 32 H 0.06 1.02 8.02 -51.93 -0.42 0.60 16 33 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.06 1.00 7.97 -51.93 -0.41 0.59 16 36 H 0.11 2.57 6.44 -51.93 -0.33 2.24 16 37 H 0.13 2.03 8.04 -52.48 -0.42 1.61 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -32.02 318.36 -5.83 -37.85 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.89 Total: 6.05 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.93 Total: 0.86 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.87 Total: -49.51 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.65 Total: -15.63 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.02 -5.83 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162973708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.295 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds