Wall clock time and date at job start Mon Mar 30 2020 21:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35894 * 117.00102 * 2 1 4 4 C 1.38754 * 120.05524 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94678 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05153 * 359.75125 * 5 4 3 7 7 C 1.38251 * 120.11273 * 0.50603 * 6 5 4 8 8 C 1.50697 * 119.97215 * 179.77054 * 7 6 5 9 9 H 1.09000 * 109.47060 * 159.72072 * 8 7 6 10 10 O 1.42903 * 109.47137 * 39.72044 * 8 7 6 11 11 C 1.53001 * 109.46848 * 279.72419 * 8 7 6 12 12 N 1.46503 * 109.46995 * 184.99995 * 11 8 7 13 13 C 1.36930 * 120.00204 * 270.00056 * 12 11 8 14 14 H 1.08004 * 120.00180 * 343.28652 * 13 12 11 15 15 C 1.38809 * 120.00391 * 163.28437 * 13 12 11 16 16 N 1.31620 * 119.99994 * 337.24213 * 15 13 12 17 17 Si 1.86800 * 120.00108 * 157.23356 * 15 13 12 18 18 H 1.48501 * 109.47051 * 89.65206 * 17 15 13 19 19 H 1.48505 * 109.47346 * 209.65075 * 17 15 13 20 20 H 1.48500 * 109.47423 * 329.65175 * 17 15 13 21 21 C 1.46502 * 119.99800 * 89.99959 * 12 11 8 22 22 C 1.47205 * 109.47011 * 275.62021 * 21 12 11 23 23 N 6.48958 * 140.34917 * 352.95262 * 3 1 2 24 24 C 1.38164 * 120.05177 * 359.49270 * 7 6 5 25 25 H 1.09006 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47461 * 299.99669 * 1 2 3 27 27 H 1.09002 * 109.47602 * 60.00489 * 1 2 3 28 28 H 1.08003 * 120.02598 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.97589 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.94407 * 180.28034 * 6 5 4 31 31 H 0.96693 * 114.00254 * 300.00317 * 10 8 7 32 32 H 1.08994 * 109.47466 * 65.00159 * 11 8 7 33 33 H 1.08996 * 109.46868 * 304.99789 * 11 8 7 34 34 H 0.97000 * 120.00096 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47302 * 35.62277 * 21 12 11 36 36 H 1.08996 * 109.47183 * 155.62584 * 21 12 11 37 37 H 1.08003 * 120.02640 * 180.28106 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6757 0.0063 7 6 4.0560 2.5170 0.0004 8 6 5.5608 2.5981 0.0008 9 1 5.9754 1.6532 0.3522 10 8 5.9807 3.6541 0.8672 11 6 6.0569 2.8760 -1.4195 12 7 7.5213 2.8365 -1.4418 13 6 8.2406 3.9789 -1.2128 14 1 7.7595 4.9433 -1.2836 15 6 9.5880 3.8977 -0.8895 16 7 10.0745 2.7906 -0.3698 17 14 10.7110 5.3594 -1.1921 18 1 10.7227 6.2318 0.0095 19 1 12.0884 4.8770 -1.4670 20 1 10.2148 6.1315 -2.3596 21 6 8.2160 1.5747 -1.7091 22 6 8.3420 0.8094 -0.4579 23 7 8.4391 0.2188 0.5081 24 6 3.4311 1.2847 -0.0001 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2128 2.3203 0.0014 29 1 1.3340 4.5113 0.0019 30 1 3.7922 4.6380 0.0113 31 1 5.6480 4.5261 0.6144 32 1 5.7152 3.8610 -1.7376 33 1 5.6627 2.1185 -2.0968 34 1 11.0162 2.7336 -0.1442 35 1 7.6472 0.9934 -2.4348 36 1 9.2083 1.7838 -2.1085 37 1 4.0206 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162973708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:39:34 Heat of formation + Delta-G solvation = -26.291752 kcal Electronic energy + Delta-G solvation = -21147.198714 eV Core-core repulsion = 17890.325844 eV Total energy + Delta-G solvation = -3256.872870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18141 -39.52285 -38.04914 -36.94543 -35.94172 -33.41733 -32.46191 -31.19289 -29.49993 -28.46812 -27.97165 -25.40486 -23.54067 -22.99527 -21.69902 -19.31900 -19.11714 -17.80979 -17.44000 -17.25763 -16.91949 -16.61722 -16.53788 -15.91558 -15.41258 -15.32624 -15.08910 -14.47269 -14.19688 -14.02651 -13.70131 -13.55631 -13.18250 -13.16816 -13.09321 -12.68267 -12.61797 -12.35572 -12.30219 -11.94220 -11.89068 -11.87778 -11.73730 -11.63987 -11.03565 -10.50472 -9.83419 -9.16478 -8.92400 -7.84925 -5.19774 0.33912 0.50206 1.55225 1.59129 1.66852 2.30608 2.37953 2.53669 2.65563 2.78613 3.35607 3.56149 3.78191 3.88736 3.92448 4.02011 4.16702 4.24579 4.33067 4.40117 4.41668 4.53224 4.58804 4.70677 4.74181 4.90876 4.97751 5.04839 5.18790 5.27851 5.33821 5.49609 5.68541 5.75792 5.83885 6.29589 6.48416 6.99421 7.11325 7.35318 7.82420 8.22505 9.22682 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.004629 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.433196 B = 6046.919728 C = 6705.167358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.118 3.882 4 C -0.211 4.211 5 C -0.072 4.072 6 C -0.154 4.154 7 C -0.074 4.074 8 C 0.128 3.872 9 H 0.057 0.943 10 O -0.560 6.560 11 C 0.123 3.877 12 N -0.582 5.582 13 C -0.241 4.241 14 H 0.088 0.912 15 C -0.049 4.049 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.301 1.301 19 H -0.302 1.302 20 H -0.262 1.262 21 C 0.252 3.748 22 C 0.259 3.741 23 N -0.551 5.551 24 C -0.170 4.170 25 H 0.116 0.884 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.376 0.624 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.793 1.291 -5.569 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.073 3.927 4 C -0.229 4.229 5 C -0.090 4.090 6 C -0.173 4.173 7 C -0.075 4.075 8 C 0.066 3.934 9 H 0.075 0.925 10 O -0.366 6.366 11 C -0.004 4.004 12 N -0.301 5.301 13 C -0.370 4.370 14 H 0.106 0.894 15 C -0.243 4.243 16 N -0.580 5.580 17 Si 0.793 3.207 18 H -0.229 1.229 19 H -0.229 1.229 20 H -0.187 1.187 21 C 0.122 3.878 22 C -0.058 4.058 23 N -0.233 5.233 24 C -0.189 4.189 25 H 0.134 0.866 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.173 0.827 29 H 0.176 0.824 30 H 0.156 0.844 31 H 0.225 0.775 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.112 -0.254 -3.855 20.479 hybrid contribution 0.799 1.068 0.033 1.334 sum -19.313 0.814 -3.822 19.705 Atomic orbital electron populations 1.23353 0.76264 1.05501 1.02448 1.86053 1.23718 1.27079 1.88779 1.19079 0.91809 0.85208 0.96645 1.21519 1.01163 0.91672 1.08559 1.21270 0.93934 0.98128 0.95662 1.21055 0.94559 0.97832 1.03821 1.20462 0.96208 0.93403 0.97473 1.21489 0.87766 0.90280 0.93822 0.92460 1.86704 1.76877 1.18801 1.54236 1.21859 0.83051 1.02259 0.93188 1.44417 1.00905 1.04706 1.80075 1.19507 0.91307 0.86494 1.39727 0.89391 1.25464 0.99877 0.99166 0.99825 1.70095 1.13199 1.29188 1.45520 0.85346 0.78131 0.79453 0.77775 1.22860 1.22874 1.18677 1.18689 1.00160 0.83802 0.85178 1.31251 0.88867 0.89651 0.96058 1.80820 1.13290 1.15910 1.13320 1.20271 0.92390 0.97881 1.08334 0.86612 0.91666 0.91211 0.82732 0.82406 0.84371 0.77511 0.90277 0.90445 0.94548 0.87507 0.88249 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.42 10.50 -92.36 -0.97 -9.39 16 3 C 0.12 3.11 6.69 22.51 0.15 3.26 16 4 C -0.21 -4.29 9.04 22.37 0.20 -4.09 16 5 C -0.07 -1.42 10.04 22.25 0.22 -1.20 16 6 C -0.15 -3.77 9.32 22.29 0.21 -3.56 16 7 C -0.07 -2.27 4.97 -19.88 -0.10 -2.37 16 8 C 0.13 4.77 3.36 29.85 0.10 4.87 16 9 H 0.06 2.59 6.87 -2.39 -0.02 2.58 16 10 O -0.56 -22.82 12.66 -148.98 -1.89 -24.70 16 11 C 0.12 4.23 5.36 86.38 0.46 4.69 16 12 N -0.58 -24.95 2.48 -712.56 -1.77 -26.72 16 13 C -0.24 -11.53 9.16 84.03 0.77 -10.76 16 14 H 0.09 4.00 7.91 -2.91 -0.02 3.97 16 15 C -0.05 -2.51 4.84 84.86 0.41 -2.10 16 16 N -0.93 -52.54 9.52 21.65 0.21 -52.34 16 17 Si 0.96 42.67 29.61 68.60 2.03 44.70 16 18 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 19 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 21 C 0.25 10.59 5.45 84.57 0.46 11.05 16 22 C 0.26 12.78 12.49 89.44 1.12 13.90 16 23 N -0.55 -29.80 18.54 20.01 0.37 -29.43 16 24 C -0.17 -5.30 9.61 22.36 0.21 -5.08 16 25 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 27 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 28 H 0.16 2.11 6.30 -2.91 -0.02 2.09 16 29 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.14 2.86 6.77 -2.91 -0.02 2.84 16 31 H 0.38 11.91 7.49 -74.06 -0.55 11.35 16 32 H 0.08 2.45 8.02 -2.39 -0.02 2.43 16 33 H 0.08 2.33 7.95 -2.39 -0.02 2.31 16 34 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 35 H 0.11 3.44 7.97 -2.39 -0.02 3.42 16 36 H 0.10 4.53 6.44 -2.39 -0.02 4.52 16 37 H 0.11 3.70 8.04 -2.91 -0.02 3.67 16 Total: -1.00 -71.14 318.36 3.86 -67.28 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.54 Total: 20.63 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 5.33 Total: 9.97 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -1.19 Total: -108.48 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -2.86 Total: -34.09 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -71.14 3.86 -67.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162973708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.985 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds