Wall clock time and date at job start Mon Mar 30 2020 21:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47143 * 274.63990 * 3 2 1 5 5 H 1.48504 * 109.46993 * 34.63956 * 3 2 1 6 6 H 1.48498 * 109.47170 * 154.63995 * 3 2 1 7 7 C 1.39878 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00464 * 162.94113 * 7 2 1 9 9 C 1.41034 * 119.99854 * 342.94548 * 7 2 1 10 10 C 1.40665 * 120.26600 * 334.24950 * 9 7 2 11 11 C 1.38009 * 119.76548 * 179.68013 * 10 9 7 12 12 N 1.39853 * 119.83695 * 180.29680 * 11 10 9 13 13 C 1.46498 * 120.00159 * 180.27889 * 12 11 10 14 14 C 1.52997 * 109.47234 * 180.02562 * 13 12 11 15 15 H 1.08997 * 110.43612 * 56.09149 * 14 13 12 16 16 C 1.54888 * 110.48835 * 293.54598 * 14 13 12 17 17 C 1.54884 * 102.74987 * 203.38350 * 16 14 13 18 18 C 1.54260 * 104.20006 * 37.94142 * 17 16 14 19 19 H 1.08998 * 110.03377 * 95.72167 * 18 17 16 20 20 O 1.42898 * 110.03323 * 217.10869 * 18 17 16 21 21 C 1.53871 * 106.59720 * 336.39224 * 18 17 16 22 22 C 1.39600 * 120.32228 * 0.57647 * 11 10 9 23 23 C 1.38054 * 120.54741 * 359.44478 * 22 11 10 24 24 C 1.38742 * 120.22257 * 0.24862 * 23 22 11 25 25 N 1.38868 * 120.16045 * 180.02562 * 24 23 22 26 26 H 0.97002 * 119.99829 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.11448 * 359.96391 * 10 9 7 28 28 H 0.97002 * 119.99895 * 0.28106 * 12 11 10 29 29 H 1.08998 * 109.47026 * 300.00191 * 13 12 11 30 30 H 1.09004 * 109.46879 * 59.99725 * 13 12 11 31 31 H 1.09004 * 110.75508 * 321.69859 * 16 14 13 32 32 H 1.08997 * 110.75642 * 84.87911 * 16 14 13 33 33 H 1.09006 * 110.48880 * 156.62368 * 17 16 14 34 34 H 1.09004 * 110.48624 * 279.26482 * 17 16 14 35 35 H 0.96699 * 114.00183 * 298.54070 * 20 18 17 36 36 H 1.09003 * 110.03811 * 240.71336 * 21 18 17 37 37 H 1.09004 * 110.03616 * 119.28521 * 21 18 17 38 38 H 1.08002 * 119.72684 * 179.71718 * 22 11 10 39 39 H 1.08006 * 119.88723 * 180.27746 * 23 22 11 40 40 H 0.97001 * 120.00147 * 0.02562 * 25 24 23 41 41 H 0.97005 * 119.99716 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3924 2.1031 -1.3955 5 1 1.4929 2.6224 0.7958 6 1 3.5862 1.4139 0.5996 7 6 2.0084 -1.2114 -0.0005 8 1 3.0528 -1.2319 -0.2749 9 6 1.3497 -2.4061 0.3571 10 6 0.2259 -2.3703 1.2023 11 6 -0.4148 -3.5451 1.5404 12 7 -1.5360 -3.5107 2.3755 13 6 -2.2152 -4.7560 2.7416 14 6 -3.4013 -4.4406 3.6551 15 1 -4.0750 -3.7322 3.1731 16 6 -2.9068 -3.8812 5.0121 17 6 -4.0882 -4.1964 5.9628 18 6 -4.5893 -5.5793 5.4979 19 1 -4.1398 -6.3635 6.1070 20 8 -6.0137 -5.6414 5.5939 21 6 -4.1526 -5.7346 4.0307 22 6 0.0545 -4.7679 1.0575 23 6 1.1566 -4.8183 0.2276 24 6 1.8141 -3.6507 -0.1318 25 7 2.9223 -3.7028 -0.9671 26 1 -0.4850 0.8401 0.0004 27 1 -0.1371 -1.4266 1.5816 28 1 -1.8641 -2.6622 2.7124 29 1 -2.5734 -5.2531 1.8401 30 1 -1.5174 -5.4103 3.2643 31 1 -2.0023 -4.3964 5.3358 32 1 -2.7352 -2.8067 4.9475 33 1 -3.7444 -4.2428 6.9962 34 1 -4.8747 -3.4495 5.8546 35 1 -6.3527 -5.5286 6.4924 36 1 -5.0271 -5.8574 3.3917 37 1 -3.4905 -6.5943 3.9271 38 1 -0.4515 -5.6818 1.3318 39 1 1.5078 -5.7699 -0.1435 40 1 3.2382 -4.5570 -1.3011 41 1 3.3805 -2.8850 -1.2166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227528708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:34:58 Heat of formation + Delta-G solvation = -44.119216 kcal Electronic energy + Delta-G solvation = -20931.223582 eV Core-core repulsion = 17809.410750 eV Total energy + Delta-G solvation = -3121.812832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.12031 -37.82912 -36.05201 -34.44964 -33.42849 -31.75039 -29.46938 -29.29592 -28.16473 -26.10696 -24.70150 -23.55256 -21.15732 -20.77679 -19.74512 -19.58023 -17.73181 -17.02181 -16.19381 -15.48310 -15.43488 -14.89900 -14.83343 -14.49974 -14.23902 -13.79704 -13.65090 -12.89714 -12.65135 -12.43073 -12.25143 -11.88495 -11.75719 -11.48848 -11.30960 -11.18273 -11.02483 -10.96045 -10.78676 -10.69975 -10.57247 -10.34942 -10.03906 -9.83429 -9.65899 -9.29031 -9.01991 -7.72190 -7.19941 -6.60162 -5.50100 -4.03873 2.92296 3.14241 3.18671 3.33041 3.51204 4.01054 4.04892 4.37834 4.50415 4.67601 4.82883 4.84114 5.15560 5.33291 5.40673 5.45388 5.51907 5.58532 5.68266 5.80399 5.89336 5.92662 6.01273 6.08990 6.15750 6.30618 6.39904 6.47432 6.66693 7.14924 7.18354 7.34105 7.47472 7.51974 7.73353 7.91308 8.02983 8.15063 8.48650 8.78736 8.93310 8.97128 9.02882 9.28582 9.37123 10.39104 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021597 B = 0.003921 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.155067 B = 7138.490099 C = 8180.366032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.077 3.923 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.071 0.929 9 C 0.096 3.904 10 C -0.202 4.202 11 C 0.178 3.822 12 N -0.762 5.762 13 C 0.148 3.852 14 C -0.101 4.101 15 H 0.079 0.921 16 C -0.115 4.115 17 C -0.158 4.158 18 C 0.099 3.901 19 H 0.057 0.943 20 O -0.568 6.568 21 C -0.111 4.111 22 C -0.256 4.256 23 C -0.152 4.152 24 C 0.084 3.916 25 N -0.889 5.889 26 H 0.274 0.726 27 H 0.116 0.884 28 H 0.387 0.613 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.374 0.626 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.374 0.626 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 -6.461 9.506 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.089 0.911 9 C 0.091 3.909 10 C -0.227 4.227 11 C 0.079 3.921 12 N -0.397 5.397 13 C 0.022 3.978 14 C -0.120 4.120 15 H 0.098 0.902 16 C -0.153 4.153 17 C -0.196 4.196 18 C 0.040 3.960 19 H 0.075 0.925 20 O -0.374 6.374 21 C -0.149 4.149 22 C -0.280 4.280 23 C -0.177 4.177 24 C -0.017 4.017 25 N -0.432 5.432 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.220 0.780 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.221 0.779 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.199 0.801 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.826 -6.571 8.902 13.001 hybrid contribution 0.433 1.161 0.443 1.315 sum -6.393 -5.411 9.345 12.549 Atomic orbital electron populations 1.69891 1.07267 1.28330 1.37115 1.25737 0.94626 1.00640 0.92844 0.86456 0.80739 0.81607 0.78727 1.19951 1.20343 1.18751 1.19120 0.97216 0.91270 1.41999 0.91139 1.16964 0.92642 0.90217 0.91097 1.20468 1.01607 0.95128 1.05460 1.17511 0.87765 0.94095 0.92686 1.44293 1.32364 1.06248 1.56772 1.21010 0.91936 0.88421 0.96435 1.22186 0.96907 0.96980 0.95900 0.90220 1.22465 0.97273 1.01500 0.94017 1.23126 0.99276 0.97724 0.99504 1.22512 0.80463 0.95765 0.97212 0.92502 1.86562 1.21293 1.95907 1.33610 1.22102 1.00221 0.98054 0.94564 1.19602 1.03152 0.94344 1.10873 1.19705 0.99193 0.94602 1.04175 1.17855 0.92335 0.93879 0.97639 1.41807 1.34381 1.08938 1.58075 0.91494 0.86605 0.78015 0.93633 0.93565 0.90972 0.91117 0.91613 0.90708 0.77911 0.90404 0.90563 0.89772 0.89837 0.80137 0.78368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.07 10.99 55.54 0.61 -20.46 16 2 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 3 Si 0.90 19.02 29.59 -169.99 -5.03 13.99 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.31 8.49 -37.91 -0.32 -12.64 16 8 H 0.07 1.78 6.69 -52.48 -0.35 1.43 16 9 C 0.10 2.57 5.57 -106.66 -0.59 1.98 16 10 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 11 C 0.18 4.19 6.64 -83.77 -0.56 3.63 16 12 N -0.76 -14.65 5.58 -58.64 -0.33 -14.98 16 13 C 0.15 2.31 4.19 -4.04 -0.02 2.30 16 14 C -0.10 -1.28 2.93 -88.96 -0.26 -1.54 16 15 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 16 C -0.11 -1.33 6.01 -24.74 -0.15 -1.48 16 17 C -0.16 -1.52 6.55 -25.08 -0.16 -1.69 16 18 C 0.10 0.99 4.26 -25.62 -0.11 0.88 16 19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 20 O -0.57 -5.77 13.22 -35.23 -0.47 -6.24 16 21 C -0.11 -1.26 6.18 -25.61 -0.16 -1.41 16 22 C -0.26 -5.90 9.31 -39.14 -0.36 -6.27 16 23 C -0.15 -3.55 9.86 -39.46 -0.39 -3.94 16 24 C 0.08 2.06 6.79 -83.22 -0.56 1.49 16 25 N -0.89 -18.49 8.98 32.75 0.29 -18.19 16 26 H 0.27 6.65 8.30 -40.82 -0.34 6.32 16 27 H 0.12 3.15 6.22 -52.49 -0.33 2.82 16 28 H 0.39 7.15 8.33 -40.82 -0.34 6.81 16 29 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 30 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16 31 H 0.07 0.86 8.02 -51.93 -0.42 0.45 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.37 2.15 9.10 45.56 0.41 2.57 16 36 H 0.08 0.93 7.96 -51.93 -0.41 0.52 16 37 H 0.08 0.80 7.84 -51.93 -0.41 0.40 16 38 H 0.08 1.77 6.69 -52.49 -0.35 1.41 16 39 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.37 6.58 8.83 -40.82 -0.36 6.22 16 41 H 0.39 7.90 7.04 -40.82 -0.29 7.62 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -29.75 329.68 -9.35 -39.09 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -5.33 Total: 24.24 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -4.07 Total: -22.42 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.58 Total: -53.63 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.47 Total: -6.24 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.75 -9.35 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227528708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.024 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds