Wall clock time and date at job start Mon Mar 30 2020 21:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47143 * 274.63990 * 3 2 1 5 5 H 1.48504 * 109.46993 * 34.63956 * 3 2 1 6 6 H 1.48498 * 109.47170 * 154.63995 * 3 2 1 7 7 C 1.39878 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00464 * 162.94113 * 7 2 1 9 9 C 1.41034 * 119.99854 * 342.94548 * 7 2 1 10 10 C 1.40665 * 120.26600 * 334.24950 * 9 7 2 11 11 C 1.38009 * 119.76548 * 179.68013 * 10 9 7 12 12 N 1.39853 * 119.83695 * 180.29680 * 11 10 9 13 13 C 1.46498 * 120.00159 * 180.27889 * 12 11 10 14 14 C 1.52997 * 109.47234 * 180.02562 * 13 12 11 15 15 H 1.08997 * 110.43612 * 56.09149 * 14 13 12 16 16 C 1.54888 * 110.48835 * 293.54598 * 14 13 12 17 17 C 1.54884 * 102.74987 * 203.38350 * 16 14 13 18 18 C 1.54260 * 104.20006 * 37.94142 * 17 16 14 19 19 H 1.08998 * 110.03377 * 95.72167 * 18 17 16 20 20 O 1.42898 * 110.03323 * 217.10869 * 18 17 16 21 21 C 1.53871 * 106.59720 * 336.39224 * 18 17 16 22 22 C 1.39600 * 120.32228 * 0.57647 * 11 10 9 23 23 C 1.38054 * 120.54741 * 359.44478 * 22 11 10 24 24 C 1.38742 * 120.22257 * 0.24862 * 23 22 11 25 25 N 1.38868 * 120.16045 * 180.02562 * 24 23 22 26 26 H 0.97002 * 119.99829 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.11448 * 359.96391 * 10 9 7 28 28 H 0.97002 * 119.99895 * 0.28106 * 12 11 10 29 29 H 1.08998 * 109.47026 * 300.00191 * 13 12 11 30 30 H 1.09004 * 109.46879 * 59.99725 * 13 12 11 31 31 H 1.09004 * 110.75508 * 321.69859 * 16 14 13 32 32 H 1.08997 * 110.75642 * 84.87911 * 16 14 13 33 33 H 1.09006 * 110.48880 * 156.62368 * 17 16 14 34 34 H 1.09004 * 110.48624 * 279.26482 * 17 16 14 35 35 H 0.96699 * 114.00183 * 298.54070 * 20 18 17 36 36 H 1.09003 * 110.03811 * 240.71336 * 21 18 17 37 37 H 1.09004 * 110.03616 * 119.28521 * 21 18 17 38 38 H 1.08002 * 119.72684 * 179.71718 * 22 11 10 39 39 H 1.08006 * 119.88723 * 180.27746 * 23 22 11 40 40 H 0.97001 * 120.00147 * 0.02562 * 25 24 23 41 41 H 0.97005 * 119.99716 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3924 2.1031 -1.3955 5 1 1.4929 2.6224 0.7958 6 1 3.5862 1.4139 0.5996 7 6 2.0084 -1.2114 -0.0005 8 1 3.0528 -1.2319 -0.2749 9 6 1.3497 -2.4061 0.3571 10 6 0.2259 -2.3703 1.2023 11 6 -0.4148 -3.5451 1.5404 12 7 -1.5360 -3.5107 2.3755 13 6 -2.2152 -4.7560 2.7416 14 6 -3.4013 -4.4406 3.6551 15 1 -4.0750 -3.7322 3.1731 16 6 -2.9068 -3.8812 5.0121 17 6 -4.0882 -4.1964 5.9628 18 6 -4.5893 -5.5793 5.4979 19 1 -4.1398 -6.3635 6.1070 20 8 -6.0137 -5.6414 5.5939 21 6 -4.1526 -5.7346 4.0307 22 6 0.0545 -4.7679 1.0575 23 6 1.1566 -4.8183 0.2276 24 6 1.8141 -3.6507 -0.1318 25 7 2.9223 -3.7028 -0.9671 26 1 -0.4850 0.8401 0.0004 27 1 -0.1371 -1.4266 1.5816 28 1 -1.8641 -2.6622 2.7124 29 1 -2.5734 -5.2531 1.8401 30 1 -1.5174 -5.4103 3.2643 31 1 -2.0023 -4.3964 5.3358 32 1 -2.7352 -2.8067 4.9475 33 1 -3.7444 -4.2428 6.9962 34 1 -4.8747 -3.4495 5.8546 35 1 -6.3527 -5.5286 6.4924 36 1 -5.0271 -5.8574 3.3917 37 1 -3.4905 -6.5943 3.9271 38 1 -0.4515 -5.6818 1.3318 39 1 1.5078 -5.7699 -0.1435 40 1 3.2382 -4.5570 -1.3011 41 1 3.3805 -2.8850 -1.2166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227528708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:34:58 Heat of formation + Delta-G solvation = -64.806449 kcal Electronic energy + Delta-G solvation = -20932.120648 eV Core-core repulsion = 17809.410750 eV Total energy + Delta-G solvation = -3122.709898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15669 -39.48822 -37.26727 -35.76510 -35.30425 -33.29005 -31.29985 -30.53499 -29.22622 -27.67602 -26.51532 -24.87377 -22.93793 -21.74072 -21.29491 -20.78281 -18.90381 -18.49292 -17.83008 -17.23431 -16.74279 -16.49008 -16.17781 -16.03991 -15.13818 -15.04273 -14.62503 -14.57120 -14.19595 -13.94386 -13.63263 -13.46292 -13.29716 -13.08524 -12.87606 -12.67770 -12.36059 -12.12905 -12.06124 -11.89361 -11.70162 -11.62437 -11.50821 -11.26541 -11.13524 -10.91182 -10.76930 -9.38804 -9.13341 -8.50000 -7.28328 -5.99166 1.13061 1.41454 1.50386 1.55360 1.66528 2.27731 2.88985 2.95438 3.40835 3.61374 3.69352 3.78498 3.86685 3.98426 4.30844 4.43222 4.50903 4.52046 4.59294 4.63384 4.79898 4.83980 4.87434 4.94423 5.02575 5.07348 5.24675 5.26279 5.31948 5.36010 5.41470 5.45909 5.68532 5.90326 6.07549 6.18010 6.29800 6.58073 6.94429 6.98398 7.07327 7.14684 7.28378 7.48836 7.68016 8.51326 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021597 B = 0.003921 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.155067 B = 7138.490099 C = 8180.366032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.034 3.966 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.493 4.493 8 H 0.074 0.926 9 C 0.062 3.938 10 C -0.227 4.227 11 C 0.174 3.826 12 N -0.757 5.757 13 C 0.148 3.852 14 C -0.094 4.094 15 H 0.069 0.931 16 C -0.115 4.115 17 C -0.149 4.149 18 C 0.102 3.898 19 H 0.075 0.925 20 O -0.585 6.585 21 C -0.111 4.111 22 C -0.260 4.260 23 C -0.158 4.158 24 C 0.068 3.932 25 N -0.880 5.880 26 H 0.279 0.721 27 H 0.096 0.904 28 H 0.388 0.612 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.393 0.607 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.390 0.610 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 -7.223 10.444 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.524 4.524 8 H 0.092 0.908 9 C 0.056 3.944 10 C -0.252 4.252 11 C 0.073 3.927 12 N -0.391 5.391 13 C 0.024 3.976 14 C -0.113 4.113 15 H 0.088 0.912 16 C -0.153 4.153 17 C -0.187 4.187 18 C 0.043 3.957 19 H 0.092 0.908 20 O -0.394 6.394 21 C -0.149 4.149 22 C -0.284 4.284 23 C -0.182 4.182 24 C -0.034 4.034 25 N -0.424 5.424 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.221 0.779 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.243 0.757 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.218 0.782 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.918 -7.365 9.855 14.114 hybrid contribution 0.394 1.291 0.164 1.360 sum -6.524 -6.073 10.019 13.410 Atomic orbital electron populations 1.69974 1.08749 1.29411 1.37916 1.26560 0.95364 1.03884 0.92027 0.85332 0.79212 0.76991 0.78910 1.19204 1.19813 1.18435 1.19386 0.97557 0.92201 1.43301 0.90804 1.17360 0.93495 0.91517 0.91984 1.20441 1.02687 0.95287 1.06776 1.17631 0.88570 0.93614 0.92866 1.44382 1.31310 1.07749 1.55694 1.21153 0.92789 0.86846 0.96822 1.22078 0.95575 0.97840 0.95778 0.91212 1.22446 0.98136 1.00835 0.93900 1.23069 0.98141 0.97534 0.99969 1.22471 0.80653 0.96315 0.96215 0.90758 1.86515 1.21301 1.95948 1.35619 1.22098 0.99840 0.97287 0.95706 1.19917 1.03155 0.94883 1.10401 1.20056 0.98971 0.95365 1.03795 1.18034 0.93435 0.93649 0.98282 1.41682 1.33362 1.09978 1.57332 0.91076 0.88612 0.77876 0.94234 0.93078 0.91148 0.92010 0.89687 0.90941 0.75686 0.91247 0.89714 0.87564 0.87149 0.78214 0.78227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.12 10.99 21.82 0.24 -44.88 16 2 C 0.03 1.78 5.14 85.23 0.44 2.22 16 3 Si 0.97 39.46 29.59 68.60 2.03 41.49 16 4 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.49 -26.69 8.49 23.35 0.20 -26.49 16 8 H 0.07 3.78 6.69 -2.91 -0.02 3.76 16 9 C 0.06 3.38 5.57 -21.18 -0.12 3.26 16 10 C -0.23 -12.28 8.50 22.81 0.19 -12.09 16 11 C 0.17 8.26 6.64 38.14 0.25 8.52 16 12 N -0.76 -29.33 5.58 -339.44 -1.89 -31.22 16 13 C 0.15 4.54 4.19 86.38 0.36 4.90 16 14 C -0.09 -2.29 2.93 -9.72 -0.03 -2.32 16 15 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 16 C -0.12 -2.54 6.01 31.88 0.19 -2.35 16 17 C -0.15 -2.54 6.55 31.66 0.21 -2.33 16 18 C 0.10 1.78 4.26 31.32 0.13 1.91 16 19 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 20 O -0.59 -10.54 13.22 -148.98 -1.97 -12.51 16 21 C -0.11 -2.33 6.18 31.32 0.19 -2.13 16 22 C -0.26 -11.76 9.31 22.56 0.21 -11.55 16 23 C -0.16 -7.18 9.86 22.35 0.22 -6.95 16 24 C 0.07 3.34 6.79 38.97 0.26 3.60 16 25 N -0.88 -36.00 8.98 -50.31 -0.45 -36.45 16 26 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 27 H 0.10 5.46 6.22 -2.91 -0.02 5.44 16 28 H 0.39 14.68 8.33 -92.71 -0.77 13.91 16 29 H 0.04 1.27 7.94 -2.39 -0.02 1.25 16 30 H 0.05 1.54 7.89 -2.39 -0.02 1.52 16 31 H 0.07 1.58 8.02 -2.38 -0.02 1.56 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 35 H 0.39 3.51 9.10 -74.06 -0.67 2.83 16 36 H 0.07 1.58 7.96 -2.39 -0.02 1.56 16 37 H 0.08 1.62 7.84 -2.39 -0.02 1.60 16 38 H 0.11 4.26 6.69 -2.91 -0.02 4.24 16 39 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 40 H 0.39 13.17 8.83 -92.71 -0.82 12.35 16 41 H 0.39 15.77 7.04 -92.70 -0.65 15.11 16 Total: -1.00 -64.36 329.68 -1.16 -65.52 By element: Atomic # 1 Polarization: 61.70 SS G_CDS: -1.84 Total: 59.86 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 2.72 Total: -41.81 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -2.10 Total: -112.55 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -1.97 Total: -12.51 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -64.36 -1.16 -65.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227528708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.712 kcal (2) G-P(sol) polarization free energy of solvation -64.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds