Wall clock time and date at job start Mon Mar 30 2020 21:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38070 * 119.57252 * 2 1 4 4 C 1.38839 * 119.32362 * 179.75129 * 3 2 1 5 5 C 1.38336 * 118.50703 * 0.51658 * 4 3 2 6 6 C 1.50705 * 120.44981 * 179.75260 * 5 4 3 7 7 N 1.46904 * 109.47050 * 259.97381 * 6 5 4 8 8 C 1.46894 * 111.00138 * 189.99983 * 7 6 5 9 9 C 1.50701 * 109.47166 * 161.72639 * 8 7 6 10 10 H 1.07995 * 119.99916 * 354.36900 * 9 8 7 11 11 C 1.37880 * 119.99699 * 174.37430 * 9 8 7 12 12 N 1.31509 * 120.00084 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99585 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46931 * 90.00030 * 13 11 9 15 15 H 1.48500 * 109.46999 * 209.99958 * 13 11 9 16 16 H 1.48496 * 109.47106 * 329.99715 * 13 11 9 17 17 C 1.46907 * 110.99662 * 66.04299 * 7 6 5 18 18 C 1.52994 * 117.50004 * 261.63584 * 17 7 6 19 19 C 1.52999 * 117.49688 * 193.01201 * 17 7 6 20 20 C 1.39097 * 119.09993 * 359.72622 * 5 4 3 21 21 N 1.39000 * 119.70317 * 180.02562 * 20 5 4 22 22 N 1.36603 * 119.99875 * 180.02562 * 21 20 5 23 23 N 1.31940 * 119.57024 * 180.27405 * 2 1 3 24 24 H 1.08997 * 109.46822 * 269.72948 * 1 2 3 25 25 H 1.09005 * 109.46680 * 29.72250 * 1 2 3 26 26 H 1.09002 * 109.47188 * 149.72554 * 1 2 3 27 27 H 1.08002 * 120.33268 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.73985 * 180.21883 * 4 3 2 29 29 H 1.08997 * 109.46774 * 19.97174 * 6 5 4 30 30 H 1.08994 * 109.46956 * 139.97744 * 6 5 4 31 31 H 1.09001 * 109.46931 * 281.72673 * 8 7 6 32 32 H 1.09000 * 109.47288 * 41.72280 * 8 7 6 33 33 H 0.97007 * 119.99892 * 179.97438 * 12 11 9 34 34 H 1.09004 * 115.54547 * 47.35185 * 17 7 6 35 35 H 1.09000 * 117.50141 * 0.02562 * 18 17 7 36 36 H 1.09000 * 117.49470 * 145.02439 * 18 17 7 37 37 H 1.08995 * 117.50023 * 214.98591 * 19 17 7 38 38 H 1.09000 * 117.49995 * 359.97438 * 19 17 7 39 39 H 0.97003 * 120.00327 * 0.02671 * 21 20 5 40 40 H 1.00906 * 110.99871 * 56.04955 * 22 21 20 41 41 H 1.00899 * 111.00240 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2008 0.0000 4 6 3.5768 1.1948 0.0053 5 6 4.2318 -0.0237 -0.0006 6 6 5.7378 -0.0812 -0.0009 7 7 6.2179 -0.3343 -1.3660 8 6 7.6563 -0.6320 -1.3714 9 6 8.0238 -1.3115 -2.6654 10 1 7.2522 -1.5850 -3.3698 11 6 9.3451 -1.5840 -2.9499 12 7 10.2847 -1.2506 -2.0923 13 14 9.8005 -2.4269 -4.5536 14 1 10.0450 -1.4016 -5.5996 15 1 11.0303 -3.2355 -4.3559 16 1 8.6883 -3.3137 -4.9799 17 6 5.9112 0.7980 -2.2502 18 6 4.6694 0.6858 -3.1369 19 6 6.0641 0.5794 -3.7568 20 6 3.4816 -1.1949 -0.0057 21 7 4.1268 -2.4261 -0.0111 22 7 3.3959 -3.5802 -0.0167 23 7 2.1582 -1.1475 -0.0055 24 1 -0.3633 -0.0049 1.0276 25 1 -0.3633 0.8925 -0.5096 26 1 -0.3634 -0.8875 -0.5181 27 1 1.6469 2.1353 0.0004 28 1 4.1329 2.1207 0.0089 29 1 6.1377 0.8683 0.3547 30 1 6.0707 -0.8847 0.6561 31 1 8.2198 0.2961 -1.2756 32 1 7.8945 -1.2896 -0.5354 33 1 11.2143 -1.4427 -2.2923 34 1 6.1617 1.7831 -1.8566 35 1 4.0797 -0.2280 -3.0639 36 1 4.1025 1.5972 -3.3267 37 1 6.4149 1.4208 -4.3544 38 1 6.3928 -0.4044 -4.0918 39 1 5.0960 -2.4658 -0.0109 40 1 2.7583 -3.6006 -0.7985 41 1 3.9982 -4.3897 -0.0197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688564492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:37:55 Heat of formation + Delta-G solvation = 99.204538 kcal Electronic energy + Delta-G solvation = -21954.937022 eV Core-core repulsion = 18871.631925 eV Total energy + Delta-G solvation = -3083.305097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17340 -37.62849 -36.50776 -34.11205 -33.11971 -31.81908 -31.57720 -28.90095 -27.68216 -26.08966 -23.90133 -22.33250 -22.16473 -21.57366 -21.18884 -19.50230 -17.70500 -17.17386 -16.70223 -15.35153 -15.13927 -14.95907 -14.79503 -14.56054 -14.32304 -14.05811 -13.59317 -13.26363 -12.76477 -12.56909 -12.42603 -12.20508 -12.03672 -11.88025 -11.35615 -11.15869 -11.12439 -10.84484 -10.79617 -10.65539 -10.02879 -9.61164 -9.36066 -9.23838 -9.16776 -9.03420 -8.74356 -8.46247 -7.39255 -6.92774 -6.07713 -4.08114 1.57743 1.83737 3.26399 3.28586 3.33495 3.36006 4.15907 4.37765 4.50815 4.61525 4.82276 5.03212 5.25174 5.28184 5.29951 5.43924 5.55995 5.66430 5.66948 5.72832 5.77984 5.78950 5.96317 6.06408 6.15611 6.21874 6.24924 6.35337 6.48714 6.65123 6.70147 6.72919 6.99654 7.07111 7.11107 7.32522 7.78080 7.81465 8.02208 8.12598 8.15404 8.46278 8.75318 8.98300 9.55106 11.02662 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.005130 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.692387 B = 5456.912417 C = 5838.533127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.162 3.838 3 C -0.240 4.240 4 C -0.025 4.025 5 C -0.179 4.179 6 C 0.102 3.898 7 N -0.507 5.507 8 C 0.194 3.806 9 C -0.499 4.499 10 H 0.067 0.933 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.033 3.967 18 C -0.176 4.176 19 C -0.158 4.158 20 C 0.434 3.566 21 N -0.565 5.565 22 N -0.597 5.597 23 N -0.535 5.535 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.035 0.965 30 H 0.071 0.929 31 H -0.001 1.001 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.419 0.581 40 H 0.336 0.664 41 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.483 3.007 3.341 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.024 3.976 3 C -0.263 4.263 4 C -0.051 4.051 5 C -0.187 4.187 6 C -0.026 4.026 7 N -0.232 5.232 8 C 0.069 3.931 9 C -0.538 4.538 10 H 0.085 0.915 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.076 4.076 18 C -0.214 4.214 19 C -0.195 4.195 20 C 0.196 3.804 21 N -0.292 5.292 22 N -0.221 5.221 23 N -0.254 5.254 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.017 0.983 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.134 0.866 39 H 0.261 0.739 40 H 0.151 0.849 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.319 1.858 3.888 15.914 hybrid contribution 2.252 0.765 -1.519 2.822 sum -13.067 2.623 2.369 13.537 Atomic orbital electron populations 1.20646 0.89641 1.02824 1.02521 1.20774 0.95984 0.87708 0.93154 1.21454 0.94548 0.98485 1.11801 1.21061 0.93887 0.96780 0.93389 1.19963 0.96412 0.92046 1.10295 1.20782 0.89548 1.00078 0.92207 1.62012 1.20246 1.35720 1.05173 1.19745 0.79986 0.95557 0.97792 1.21199 0.91803 1.37438 1.03353 0.91486 1.24966 0.96519 0.96161 0.96901 1.69948 1.00439 1.47889 1.35562 0.86581 0.77949 0.79567 0.83825 1.20695 1.21321 1.19924 1.21947 1.01479 0.92483 0.91705 1.22896 0.91220 1.01506 1.05782 1.23150 0.97575 1.04095 0.94699 1.17725 0.87915 0.84189 0.90538 1.43250 1.06625 0.98894 1.80426 1.60032 1.17343 0.95205 1.49491 1.66953 1.07334 1.29552 1.21550 0.90900 0.91148 0.90935 0.85995 0.85797 0.94637 0.91051 0.98321 0.95869 0.92962 0.91481 0.89712 0.90474 0.90293 0.86556 0.73883 0.84940 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.17 36.01 0.37 -0.66 16 2 C 0.16 2.29 6.78 -82.60 -0.56 1.73 16 3 C -0.24 -3.18 9.73 -39.42 -0.38 -3.56 16 4 C -0.02 -0.36 9.35 -39.32 -0.37 -0.72 16 5 C -0.18 -2.88 4.49 -104.26 -0.47 -3.35 16 6 C 0.10 1.78 4.39 -4.97 -0.02 1.75 16 7 N -0.51 -10.11 4.57 -229.52 -1.05 -11.16 16 8 C 0.19 4.70 4.75 -4.98 -0.02 4.68 16 9 C -0.50 -13.10 7.81 -34.44 -0.27 -13.37 16 10 H 0.07 1.75 5.56 -52.49 -0.29 1.46 16 11 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 12 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 13 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C 0.03 0.63 4.21 -67.71 -0.28 0.34 16 18 C -0.18 -3.02 9.82 -26.73 -0.26 -3.29 16 19 C -0.16 -3.02 9.41 -26.73 -0.25 -3.27 16 20 C 0.43 7.24 7.54 -155.01 -1.17 6.07 16 21 N -0.56 -8.86 6.54 31.12 0.20 -8.66 16 22 N -0.60 -8.08 10.05 60.35 0.61 -7.47 16 23 N -0.53 -8.72 9.71 -8.67 -0.08 -8.80 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 29 H 0.04 0.60 8.01 -51.93 -0.42 0.19 16 30 H 0.07 1.22 6.80 -51.93 -0.35 0.87 16 31 H 0.00 -0.03 8.02 -51.93 -0.42 -0.45 16 32 H 0.02 0.59 7.76 -51.93 -0.40 0.19 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.12 2.50 5.31 -51.93 -0.28 2.22 16 39 H 0.42 6.73 7.04 -185.15 -1.30 5.42 16 40 H 0.34 4.48 9.02 -181.36 -1.64 2.85 16 41 H 0.35 3.84 9.21 -181.36 -1.67 2.17 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -29.53 337.01 -13.02 -42.55 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -9.70 Total: 9.74 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -3.79 Total: -12.23 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.41 Total: -61.13 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.53 -13.02 -42.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688564492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.759 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds