Wall clock time and date at job start Mon Mar 30 2020 21:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47119 * 270.00296 * 3 2 1 5 5 H 1.48502 * 109.46885 * 29.99943 * 3 2 1 6 6 H 1.48500 * 109.47190 * 149.99917 * 3 2 1 7 7 C 1.37883 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99677 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99852 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46923 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47254 * 55.00432 * 10 9 7 12 12 N 1.46900 * 109.46980 * 295.00029 * 10 9 7 13 13 C 1.50701 * 109.47138 * 175.00143 * 10 9 7 14 14 C 1.37842 * 120.10488 * 99.97398 * 13 10 9 15 15 C 1.38743 * 120.60178 * 180.02562 * 14 13 10 16 16 C 1.36655 * 120.51538 * 0.20266 * 15 14 13 17 17 C 1.39650 * 119.79021 * 359.56219 * 16 15 14 18 18 C 1.46576 * 133.74343 * 180.14361 * 17 16 15 19 19 N 1.29737 * 107.41595 * 180.28772 * 18 17 16 20 20 O 1.41353 * 109.75306 * 359.97438 * 19 18 17 21 21 C 1.34822 * 109.33080 * 0.02562 * 20 19 18 22 22 H 0.96990 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.46941 * 60.00152 * 9 7 2 24 24 H 1.08996 * 109.46980 * 300.00213 * 9 7 2 25 25 H 1.00901 * 111.00167 * 299.99881 * 12 10 9 26 26 H 1.00900 * 110.99892 * 63.96072 * 12 10 9 27 27 H 1.08004 * 119.69582 * 0.02963 * 14 13 10 28 28 H 1.08004 * 119.74084 * 179.97438 * 15 14 13 29 29 H 1.07992 * 120.10793 * 179.74956 * 16 15 14 30 30 H 1.07998 * 126.28993 * 0.30503 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.5866 -3.1758 -0.8415 12 7 3.6334 -3.2931 1.2556 13 6 5.5234 -2.6385 -0.1243 14 6 6.3096 -2.8114 0.9946 15 6 7.6932 -2.8144 0.8921 16 6 8.2995 -2.6416 -0.3204 17 6 7.5212 -2.4697 -1.4671 18 6 7.8356 -2.2679 -2.8844 19 7 6.7099 -2.1606 -3.5204 20 8 5.6343 -2.2790 -2.6110 21 6 6.1199 -2.4660 -1.3672 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6797 0.8894 24 1 3.8745 -0.6809 -0.8905 25 1 4.0245 -2.8116 2.0514 26 1 2.6296 -3.3622 1.3322 27 1 5.8443 -2.9459 1.9599 28 1 8.2959 -2.9506 1.7779 29 1 9.3771 -2.6410 -0.3920 30 1 8.8228 -2.2181 -3.3194 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:39:10 Heat of formation + Delta-G solvation = 60.615341 kcal Electronic energy + Delta-G solvation = -15729.317059 eV Core-core repulsion = 13105.970193 eV Total energy + Delta-G solvation = -2623.346866 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.59151 -38.08185 -35.65548 -33.36285 -32.39518 -30.06787 -29.80007 -28.60062 -24.77891 -22.90205 -22.51290 -21.62469 -19.78927 -17.66992 -17.21538 -16.41454 -15.72031 -15.50926 -14.93430 -14.31015 -14.03329 -13.56664 -13.23311 -13.14050 -12.69702 -12.25733 -11.95090 -11.88659 -11.44318 -11.32388 -11.25165 -10.93104 -10.57300 -10.26319 -9.80425 -9.28973 -8.75666 -8.62931 -8.39411 -7.87451 -6.12581 -4.12225 0.75799 1.42526 2.18569 2.66149 3.26947 3.34078 3.37187 3.73646 4.23895 4.38832 4.42645 4.67022 5.04243 5.12443 5.21799 5.37147 5.42442 5.55762 5.79225 5.89452 6.11777 6.27215 6.40623 6.44150 6.60542 6.75799 7.02086 7.17735 7.35322 7.65888 7.83083 8.11556 8.41081 8.89500 9.49540 11.00039 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.008208 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.994189 B = 3410.675770 C = 3800.023400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.075 0.925 9 C -0.036 4.036 10 C 0.138 3.862 11 H 0.087 0.913 12 N -0.838 5.838 13 C -0.060 4.060 14 C -0.057 4.057 15 C -0.147 4.147 16 C -0.058 4.058 17 C -0.207 4.207 18 C 0.102 3.898 19 N -0.294 5.294 20 O -0.082 6.082 21 C 0.091 3.909 22 H 0.264 0.736 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.328 0.672 26 H 0.356 0.644 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.634 -4.689 1.153 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.093 0.907 9 C -0.074 4.074 10 C 0.026 3.974 11 H 0.105 0.895 12 N -0.368 5.368 13 C -0.063 4.063 14 C -0.077 4.077 15 C -0.166 4.166 16 C -0.078 4.078 17 C -0.211 4.211 18 C -0.100 4.100 19 N -0.034 5.034 20 O -0.093 6.093 21 C 0.036 3.964 22 H 0.074 0.926 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.140 0.860 26 H 0.170 0.830 27 H 0.160 0.840 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 17.127 -5.033 -0.316 17.854 hybrid contribution 0.361 1.859 0.757 2.040 sum 17.488 -3.174 0.441 17.779 Atomic orbital electron populations 1.69902 1.06220 1.27029 1.50421 1.24978 0.94690 0.99109 0.94250 0.86811 0.80236 0.83735 0.78711 1.20162 1.21282 1.19204 1.21005 0.88824 0.94623 1.51778 0.90651 1.20283 0.97832 0.92389 0.96940 1.20236 0.87121 0.96177 0.93871 0.89451 1.59273 1.18033 1.56171 1.03306 1.19265 0.97681 1.01274 0.88055 1.21019 0.92842 0.95504 0.98289 1.20771 0.94806 1.03515 0.97469 1.20280 0.99318 0.97637 0.90553 1.20832 0.92854 1.13437 0.93941 1.25987 0.98984 0.93657 0.91325 1.79803 0.94761 1.17679 1.11203 1.89237 1.27508 1.79378 1.13161 1.20098 0.92173 0.96629 0.87480 0.92601 0.96464 0.96561 0.85995 0.82976 0.84037 0.85194 0.85358 0.77705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -14.56 9.10 -34.44 -0.31 -14.87 16 8 H 0.08 2.21 7.39 -52.49 -0.39 1.82 16 9 C -0.04 -0.85 3.67 -27.88 -0.10 -0.95 16 10 C 0.14 2.77 3.00 -68.86 -0.21 2.57 16 11 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 12 N -0.84 -14.88 8.67 -5.65 -0.05 -14.93 16 13 C -0.06 -1.07 5.10 -104.51 -0.53 -1.60 16 14 C -0.06 -0.82 9.24 -39.54 -0.37 -1.18 16 15 C -0.15 -1.72 9.97 -39.97 -0.40 -2.12 16 16 C -0.06 -0.67 10.05 -39.63 -0.40 -1.06 16 17 C -0.21 -2.96 6.35 -105.16 -0.67 -3.63 16 18 C 0.10 1.28 12.32 -15.08 -0.19 1.09 16 19 N -0.29 -4.92 12.81 31.94 0.41 -4.51 16 20 O -0.08 -1.63 12.06 7.68 0.09 -1.54 16 21 C 0.09 1.64 7.18 -38.47 -0.28 1.36 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 24 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 25 H 0.33 5.24 7.29 -39.29 -0.29 4.95 16 26 H 0.36 6.73 7.90 -39.29 -0.31 6.42 16 27 H 0.14 1.81 6.22 -52.48 -0.33 1.48 16 28 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.21 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -32.33 261.38 -5.98 -38.32 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -2.94 Total: 6.37 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.54 Total: -18.42 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 1.13 Total: -46.03 kcal Atomic # 8 Polarization: -1.63 SS G_CDS: 0.09 Total: -1.54 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.33 -5.98 -38.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.935 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds