Wall clock time and date at job start Mon Mar 30 2020 21:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31864 * 124.33729 * 2 1 4 4 C 1.45457 * 114.88823 * 179.97438 * 3 2 1 5 5 C 1.41398 * 129.17199 * 180.02562 * 4 3 2 6 6 C 1.37746 * 120.90555 * 179.97438 * 5 4 3 7 7 C 1.37928 * 120.76193 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.05570 * 179.97438 * 7 6 5 9 9 C 1.40370 * 119.88544 * 359.97438 * 7 6 5 10 10 C 1.40933 * 120.11655 * 180.02562 * 9 7 6 11 11 H 1.07994 * 120.00456 * 39.17223 * 10 9 7 12 12 C 1.39936 * 119.99890 * 219.18098 * 10 9 7 13 13 N 1.30868 * 119.99922 * 20.63182 * 12 10 9 14 14 Si 1.86801 * 119.99648 * 200.63643 * 12 10 9 15 15 H 1.48502 * 109.47205 * 59.99908 * 14 12 10 16 16 H 1.48502 * 109.46775 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46927 * 299.99652 * 14 12 10 18 18 C 1.39396 * 111.84301 * 359.97438 * 4 3 2 19 19 S 1.75312 * 124.33230 * 179.97438 * 2 1 3 20 20 H 1.08995 * 109.47470 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46962 * 300.01491 * 1 2 3 22 22 H 1.08998 * 109.47044 * 60.01420 * 1 2 3 23 23 H 1.08004 * 122.55614 * 359.93701 * 3 2 1 24 24 H 1.07999 * 119.54504 * 359.97438 * 5 4 3 25 25 H 1.07998 * 119.62126 * 180.27300 * 6 5 4 26 26 H 1.08999 * 109.46849 * 94.65191 * 8 7 6 27 27 H 1.09001 * 109.46694 * 214.64450 * 8 7 6 28 28 H 1.09000 * 109.47131 * 334.64579 * 8 7 6 29 29 H 0.96995 * 119.99652 * 181.18586 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2508 1.0888 0.0000 4 6 3.6856 0.8500 0.0006 5 6 4.7466 1.7847 0.0012 6 6 6.0588 1.3656 0.0023 7 6 6.3701 0.0219 0.0032 8 6 7.8113 -0.4189 0.0038 9 6 5.3424 -0.9342 0.0037 10 6 5.6550 -2.3084 0.0052 11 1 6.4814 -2.6736 0.5967 12 6 4.8945 -3.1998 -0.7599 13 7 4.1807 -2.7567 -1.7633 14 14 4.8983 -5.0220 -0.3488 15 1 4.3965 -5.2184 1.0350 16 1 4.0186 -5.7461 -1.3013 17 1 6.2823 -5.5500 -0.4531 18 6 3.9848 -0.5114 0.0016 19 16 2.4957 -1.4477 0.0006 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5141 0.8899 22 1 -0.3633 0.5136 -0.8901 23 1 1.8269 2.0822 -0.0010 24 1 4.5251 2.8418 0.0009 25 1 6.8529 2.0975 0.0072 26 1 8.1341 -0.6042 1.0282 27 1 7.9114 -1.3341 -0.5798 28 1 8.4304 0.3625 -0.4367 29 1 3.6401 -3.3721 -2.2829 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307288564.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:37:01 Heat of formation + Delta-G solvation = 15.734522 kcal Electronic energy + Delta-G solvation = -13746.543677 eV Core-core repulsion = 11531.710753 eV Total energy + Delta-G solvation = -2214.832924 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 232.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.06251 -35.24053 -33.45751 -31.21217 -29.79861 -27.74240 -25.31221 -24.10221 -21.82121 -20.06623 -18.87051 -17.34593 -15.66781 -15.08018 -14.30285 -14.19444 -13.45315 -13.32933 -12.84007 -12.67546 -12.59488 -12.03330 -11.58687 -11.49322 -11.23296 -11.08711 -11.00837 -10.86103 -10.56210 -10.07962 -9.72926 -9.50637 -9.34636 -8.82491 -8.10828 -7.01844 -6.92044 -6.13792 -4.45890 2.00658 2.77584 2.88101 3.05784 3.07356 3.12060 3.52112 3.56797 3.94061 4.59134 5.36789 5.47949 5.77040 5.92992 6.05283 6.17531 6.22109 6.33438 6.45887 6.52826 6.67043 6.87632 6.92499 6.96060 7.09400 7.34729 7.45391 7.62515 7.76448 7.96896 8.15425 8.40828 8.73186 8.83487 10.14323 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.014882 C = 0.008936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.787241 B = 1880.974647 C = 3132.714880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.207 4.207 3 C -0.137 4.137 4 C -0.060 4.060 5 C -0.199 4.199 6 C -0.084 4.084 7 C -0.187 4.187 8 C -0.079 4.079 9 C 0.153 3.847 10 C -0.474 4.474 11 H 0.084 0.916 12 C 0.073 3.927 13 N -0.771 5.771 14 Si 0.895 3.105 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.265 1.265 18 C -0.158 4.158 19 S 0.108 5.892 20 H 0.059 0.941 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.117 0.883 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 1.515 1.869 3.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.323 4.323 3 C -0.169 4.169 4 C -0.068 4.068 5 C -0.220 4.220 6 C -0.104 4.104 7 C -0.192 4.192 8 C -0.136 4.136 9 C 0.148 3.852 10 C -0.503 4.503 11 H 0.102 0.898 12 C -0.146 4.146 13 N -0.396 5.396 14 Si 0.719 3.281 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.189 1.189 18 C -0.274 4.274 19 S 0.374 5.626 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.135 0.865 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.541 -0.127 1.652 3.909 hybrid contribution 0.248 0.786 -0.034 0.825 sum -3.292 0.659 1.617 3.727 Atomic orbital electron populations 1.20215 0.89544 1.01867 1.01609 1.24197 0.99294 0.99539 1.09300 1.20637 0.92193 0.97726 1.06373 1.18973 0.91840 0.92981 1.02969 1.20162 0.91515 0.96134 1.14232 1.20263 0.94835 0.94844 1.00459 1.19650 0.94501 0.92283 1.12728 1.20350 0.92875 1.00481 0.99920 1.16716 0.87396 0.93067 0.88058 1.19292 1.14526 0.91314 1.25167 0.89774 1.25816 0.93938 1.01262 0.93612 1.69812 1.20183 1.38198 1.11448 0.86527 0.79354 0.82359 0.79855 1.18613 1.20123 1.18910 1.22574 0.96898 0.93909 1.14012 1.83710 0.95272 1.06211 1.77376 0.92176 0.91760 0.91723 0.86471 0.88926 0.88758 0.93931 0.91894 0.94283 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.32 36.01 0.37 -0.78 15 2 C -0.21 -4.28 6.38 -36.21 -0.23 -4.51 15 3 C -0.14 -2.94 10.22 -38.61 -0.39 -3.34 15 4 C -0.06 -1.48 6.04 -105.39 -0.64 -2.11 15 5 C -0.20 -4.57 10.10 -38.56 -0.39 -4.95 15 6 C -0.08 -1.91 9.61 -39.87 -0.38 -2.29 15 7 C -0.19 -4.53 5.94 -103.93 -0.62 -5.14 15 8 C -0.08 -1.64 9.36 36.01 0.34 -1.30 15 9 C 0.15 4.07 5.37 -106.56 -0.57 3.50 15 10 C -0.47 -12.33 7.65 -37.93 -0.29 -12.62 15 11 H 0.08 2.11 7.56 -52.49 -0.40 1.71 15 12 C 0.07 1.82 4.28 -17.33 -0.07 1.75 15 13 N -0.77 -19.87 10.69 55.55 0.59 -19.28 15 14 Si 0.90 18.78 29.61 -169.99 -5.03 13.74 15 15 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 16 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 18 C -0.16 -4.12 5.74 -37.64 -0.22 -4.33 15 19 S 0.11 2.54 19.85 -107.50 -2.13 0.41 15 20 H 0.06 0.88 8.13 -51.93 -0.42 0.46 15 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.12 2.18 8.06 -52.48 -0.42 1.75 15 24 H 0.09 1.87 8.06 -52.49 -0.42 1.45 15 25 H 0.09 1.83 8.06 -52.49 -0.42 1.41 15 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.06 1.34 7.23 -51.93 -0.38 0.97 15 28 H 0.04 0.70 8.05 -51.93 -0.42 0.28 15 29 H 0.29 6.81 8.30 -40.82 -0.34 6.47 15 LS Contribution 260.31 15.07 3.92 3.92 Total: -1.00 -27.84 260.31 -9.03 -36.87 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -3.28 Total: 0.48 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: -3.09 Total: -36.14 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.59 Total: -19.28 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.13 Total: 0.41 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.84 -9.03 -36.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307288564.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.601 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds