Wall clock time and date at job start Mon Mar 30 2020 21:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47294 * 2 1 4 4 C 1.50706 * 109.47011 * 120.00067 * 2 1 3 5 5 H 1.08003 * 120.00129 * 120.00070 * 4 2 1 6 6 C 1.37871 * 120.00010 * 300.27240 * 4 2 1 7 7 N 1.31516 * 119.99781 * 359.72605 * 6 4 2 8 8 Si 1.86800 * 120.00314 * 179.72544 * 6 4 2 9 9 H 1.48503 * 109.47076 * 60.00252 * 8 6 4 10 10 H 1.48499 * 109.47216 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47173 * 300.00082 * 8 6 4 12 12 C 1.50707 * 109.47185 * 239.99567 * 2 1 3 13 13 N 1.35200 * 126.18796 * 359.80955 * 12 2 1 14 14 H 0.97000 * 125.99944 * 359.91699 * 13 12 2 15 15 N 1.40311 * 107.98988 * 179.97438 * 13 12 2 16 16 C 1.30127 * 108.12630 * 359.97438 * 15 13 12 17 17 C 1.34564 * 126.18997 * 179.49597 * 12 2 1 18 18 C 1.50883 * 128.32671 * 0.96053 * 17 12 2 19 19 C 1.53392 * 108.26125 * 162.86811 * 18 17 12 20 20 C 1.53023 * 109.71381 * 50.31164 * 19 18 17 21 21 C 1.50944 * 128.28951 * 180.17612 * 16 15 13 22 22 H 1.09006 * 109.47290 * 299.99913 * 1 2 3 23 23 H 1.09001 * 109.47390 * 59.99823 * 1 2 3 24 24 H 1.09003 * 109.47376 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47032 * 173.81286 * 3 2 1 26 26 H 1.09007 * 109.47122 * 293.80988 * 3 2 1 27 27 H 1.09001 * 109.47689 * 53.80910 * 3 2 1 28 28 H 0.97001 * 120.00113 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.87397 * 43.06143 * 18 17 12 30 30 H 1.09000 * 109.50153 * 282.45542 * 18 17 12 31 31 H 1.08995 * 109.42728 * 290.23731 * 19 18 17 32 32 H 1.08992 * 109.39032 * 170.36035 * 19 18 17 33 33 H 1.09004 * 109.42750 * 168.18476 * 20 19 18 34 34 H 1.09005 * 109.38543 * 48.32431 * 20 19 18 35 35 H 1.09006 * 109.71894 * 282.98565 * 21 16 15 36 36 H 1.09008 * 109.71525 * 43.58092 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6945 -0.2427 2.4827 7 7 0.9385 0.8266 2.6033 8 14 2.3108 -1.1277 4.0080 9 1 3.7958 -1.1284 4.0138 10 1 1.8119 -0.4304 5.2204 11 1 1.8152 -2.5275 4.0022 12 6 2.0323 -0.7105 -1.2305 13 7 1.2696 -1.2719 -2.1954 14 1 0.3001 -1.2896 -2.2176 15 7 2.1271 -1.8255 -3.1582 16 6 3.3534 -1.6033 -2.7838 17 6 3.3210 -0.8958 -1.5705 18 6 4.5577 -0.4697 -0.8184 19 6 5.7506 -1.2635 -1.3660 20 6 5.7775 -1.1672 -2.8930 21 6 4.6311 -1.9985 -3.4836 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1243 1.4444 0.1108 26 1 1.7699 1.9233 -0.9403 27 1 1.5890 1.9873 0.8294 28 1 0.7011 1.1559 3.4843 29 1 4.4348 -0.6770 0.2446 30 1 4.7255 0.5968 -0.9686 31 1 5.6574 -2.3083 -1.0701 32 1 6.6753 -0.8529 -0.9605 33 1 6.7292 -1.5481 -3.2636 34 1 5.6629 -0.1252 -3.1919 35 1 4.8246 -3.0594 -3.3245 36 1 4.5432 -1.7970 -4.5513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260870708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:41:04 Heat of formation + Delta-G solvation = 43.910203 kcal Electronic energy + Delta-G solvation = -17269.277791 eV Core-core repulsion = 14753.728152 eV Total energy + Delta-G solvation = -2515.549639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77076 -36.13764 -35.42528 -31.80997 -30.32054 -29.82841 -27.35158 -25.70482 -25.21478 -23.76332 -21.28721 -20.89795 -18.62520 -18.05275 -16.42553 -15.86123 -14.76460 -14.65301 -13.91975 -13.60206 -13.33411 -13.00109 -12.69683 -12.41355 -12.01743 -11.58221 -11.45771 -11.28414 -11.07015 -10.87431 -10.73678 -10.59238 -10.48095 -10.28448 -10.21188 -9.82031 -9.57837 -9.48218 -8.99841 -8.45311 -8.39508 -7.32941 -6.06948 -4.15750 2.81368 3.27685 3.32395 3.35601 3.61042 3.67020 4.37403 5.07583 5.20061 5.24256 5.31297 5.62275 5.93394 5.94401 5.97748 6.05836 6.18141 6.28214 6.36614 6.44190 6.55454 6.64750 6.68678 6.78591 6.87073 6.92067 7.02062 7.14260 7.23805 7.47063 7.54524 7.66328 7.89197 7.99656 8.18696 8.34465 8.56007 8.83480 9.49102 10.95160 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.027173 B = 0.009542 C = 0.008069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.191166 B = 2933.777737 C = 3469.244852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.122 3.878 3 C -0.123 4.123 4 C -0.496 4.496 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.278 1.278 12 C 0.153 3.847 13 N -0.490 5.490 14 H 0.430 0.570 15 N -0.324 5.324 16 C 0.071 3.929 17 C -0.249 4.249 18 C -0.034 4.034 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.032 4.032 22 H 0.096 0.904 23 H 0.010 0.990 24 H 0.027 0.973 25 H 0.040 0.960 26 H 0.007 0.993 27 H 0.086 0.914 28 H 0.262 0.738 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.561 -1.530 -6.406 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.120 3.880 3 C -0.181 4.181 4 C -0.535 4.535 5 H 0.078 0.922 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.204 1.204 12 C 0.025 3.975 13 N -0.198 5.198 14 H 0.274 0.726 15 N -0.146 5.146 16 C -0.097 4.097 17 C -0.260 4.260 18 C -0.072 4.072 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.072 4.072 22 H 0.114 0.886 23 H 0.029 0.971 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.741 -1.939 -7.162 8.805 hybrid contribution 0.079 -0.203 1.404 1.421 sum 4.820 -2.142 -5.758 7.808 Atomic orbital electron populations 1.21939 0.97786 0.99241 1.01193 1.17021 0.92233 0.92066 0.86687 1.21776 1.00214 0.96816 0.99268 1.20872 1.31488 1.12146 0.88985 0.92167 1.24871 0.94857 0.94934 0.98772 1.69797 1.36479 1.22738 1.23533 0.86612 0.79367 0.79725 0.82098 1.20058 1.21300 1.20385 1.21607 0.90812 0.93808 0.91265 1.46299 1.08409 1.47101 1.17948 0.72624 1.76747 1.00521 1.23153 1.14201 1.22140 0.93181 0.98689 0.95683 1.19511 0.94411 1.12939 0.99135 1.19960 0.89614 0.97924 0.99683 1.21589 0.98367 1.00799 0.94753 1.21540 0.96863 1.00219 0.96417 1.20003 0.89144 0.99727 0.98284 0.88581 0.97101 0.95371 0.94090 0.97411 0.89553 0.92801 0.89802 0.92544 0.92266 0.92358 0.92044 0.91830 0.90724 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 7.30 37.15 0.27 -2.97 16 2 C 0.12 2.85 0.54 -156.81 -0.09 2.77 16 3 C -0.12 -2.81 7.94 37.15 0.29 -2.52 16 4 C -0.50 -12.63 6.74 -34.44 -0.23 -12.86 16 5 H 0.06 1.58 7.26 -52.48 -0.38 1.20 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.08 9.42 55.43 0.52 -22.56 16 8 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.15 3.37 5.53 -82.40 -0.46 2.92 16 13 N -0.49 -10.11 7.12 33.39 0.24 -9.88 16 14 H 0.43 7.89 8.03 -182.44 -1.47 6.43 16 15 N -0.32 -6.69 12.68 33.75 0.43 -6.27 16 16 C 0.07 1.38 7.10 -82.35 -0.58 0.79 16 17 C -0.25 -5.19 5.62 -104.98 -0.59 -5.78 16 18 C -0.03 -0.63 4.83 -27.59 -0.13 -0.76 16 19 C -0.12 -1.76 5.87 -26.52 -0.16 -1.92 16 20 C -0.11 -1.50 5.86 -26.50 -0.16 -1.66 16 21 C -0.03 -0.48 6.31 -27.54 -0.17 -0.66 16 22 H 0.10 2.36 6.06 -51.93 -0.31 2.05 16 23 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 24 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 25 H 0.04 0.91 6.31 -51.93 -0.33 0.59 16 26 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 27 H 0.09 2.13 6.27 -51.93 -0.33 1.80 16 28 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.08 1.73 6.61 -51.93 -0.34 1.39 16 30 H 0.06 1.03 7.45 -51.93 -0.39 0.64 16 31 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 278.23 15.07 4.19 4.19 Total: -1.00 -27.20 278.23 -8.20 -35.40 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.47 Total: 4.81 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.09 Total: -21.02 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 1.19 Total: -38.70 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.20 -8.20 -35.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260870708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.315 kcal (2) G-P(sol) polarization free energy of solvation -27.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds