Wall clock time and date at job start Mon Mar 30 2020 21:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00455 * 2 1 4 4 S 1.81402 * 109.47078 * 114.99529 * 3 2 1 5 5 C 1.76202 * 102.99824 * 180.02562 * 4 3 2 6 6 C 1.39681 * 119.84494 * 359.97438 * 5 4 3 7 7 C 1.38020 * 120.54134 * 180.02562 * 6 5 4 8 8 C 1.38757 * 120.22859 * 0.23439 * 7 6 5 9 9 N 1.38838 * 120.16045 * 179.74513 * 8 7 6 10 10 C 1.41587 * 119.68375 * 359.52271 * 8 7 6 11 11 C 1.41029 * 120.26946 * 180.22753 * 10 8 7 12 12 H 1.08001 * 119.99440 * 333.89074 * 11 10 8 13 13 C 1.39871 * 120.00623 * 153.88618 * 11 10 8 14 14 N 1.30910 * 119.99453 * 343.97521 * 13 11 10 15 15 Si 1.86791 * 120.00144 * 163.96901 * 13 11 10 16 16 H 1.48504 * 109.46993 * 94.96999 * 15 13 11 17 17 H 1.48501 * 109.47181 * 214.96696 * 15 13 11 18 18 H 1.48496 * 109.47348 * 334.96939 * 15 13 11 19 19 C 1.38069 * 119.84352 * 180.02562 * 5 4 3 20 20 H 1.08003 * 119.99270 * 0.02562 * 1 2 3 21 21 H 1.07994 * 120.00470 * 179.97438 * 1 2 3 22 22 H 1.08003 * 119.99270 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46787 * 354.99709 * 3 2 1 24 24 H 1.08998 * 109.46876 * 234.99785 * 3 2 1 25 25 H 1.07993 * 119.72742 * 0.02562 * 6 5 4 26 26 H 1.07996 * 119.88483 * 179.97438 * 7 6 5 27 27 H 0.96993 * 119.99897 * 359.97438 * 9 8 7 28 28 H 0.96996 * 119.99772 * 180.02562 * 9 8 7 29 29 H 0.97005 * 119.99670 * 179.97438 * 14 13 11 30 30 H 1.07994 * 120.12224 * 359.97371 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 16 2.9918 1.4673 1.5501 5 6 3.7940 3.0257 1.3704 6 6 3.6020 3.7765 0.2082 7 6 4.2238 4.9988 0.0522 8 6 5.0522 5.4935 1.0493 9 7 5.6811 6.7208 0.8885 10 6 5.2495 4.7429 2.2335 11 6 6.0852 5.2362 3.2569 12 1 6.8828 5.9241 3.0180 13 6 5.8809 4.8348 4.5811 14 7 4.7529 4.2673 4.9263 15 14 7.2177 5.1084 5.8567 16 1 6.9623 6.3823 6.5759 17 1 7.2145 3.9835 6.8262 18 1 8.5389 5.1769 5.1824 19 6 4.6103 3.4986 2.3786 20 1 -0.5399 0.9354 -0.0004 21 1 -0.5400 -0.9352 -0.0004 22 1 1.8499 -0.9354 0.0004 23 1 1.3587 2.1315 -0.0896 24 1 2.7557 1.3249 -0.8418 25 1 2.9619 3.3974 -0.5745 26 1 4.0682 5.5702 -0.8509 27 1 5.5421 7.2344 0.0776 28 1 6.2601 7.0642 1.5869 29 1 4.6114 3.9885 5.8446 30 1 4.7569 2.9155 3.2756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308564650.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:40:41 Heat of formation + Delta-G solvation = 30.361211 kcal Electronic energy + Delta-G solvation = -13664.058330 eV Core-core repulsion = 11357.122278 eV Total energy + Delta-G solvation = -2306.936053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 235.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.75783 -34.63488 -33.61292 -33.16909 -29.63894 -27.66844 -27.19425 -25.01094 -21.31527 -20.52381 -19.71459 -17.43796 -16.19500 -15.73079 -15.55133 -15.05756 -14.64230 -14.11193 -13.53402 -12.89368 -12.67463 -12.47410 -12.15849 -11.91753 -11.49637 -11.18843 -11.07285 -11.05767 -10.50154 -10.33966 -9.79933 -9.62793 -9.37262 -9.14571 -9.01315 -7.60746 -7.33110 -6.70173 -5.89965 -4.18194 1.88589 2.76237 2.94526 3.02332 3.10898 3.13507 3.19672 3.47273 3.97840 4.64526 4.93716 5.16832 5.20638 5.54260 5.64581 5.88042 5.91423 6.18569 6.34077 6.62171 6.76920 6.94868 7.03954 7.21901 7.37843 7.56415 7.75282 7.88886 8.13174 8.39787 8.72787 8.81337 9.03130 9.09775 10.29045 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.028948 B = 0.007156 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.031130 B = 3911.794316 C = 4751.491907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.132 4.132 3 C -0.077 4.077 4 S -0.156 6.156 5 C -0.102 4.102 6 C -0.198 4.198 7 C -0.170 4.170 8 C 0.122 3.878 9 N -0.883 5.883 10 C 0.075 3.925 11 C -0.464 4.464 12 H 0.074 0.926 13 C 0.075 3.925 14 N -0.797 5.797 15 Si 0.905 3.095 16 H -0.273 1.273 17 H -0.276 1.276 18 H -0.262 1.262 19 C -0.113 4.113 20 H 0.098 0.902 21 H 0.100 0.900 22 H 0.114 0.886 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.377 0.623 28 H 0.392 0.608 29 H 0.279 0.721 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 -2.901 -5.590 6.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.151 4.151 3 C -0.224 4.224 4 S 0.086 5.914 5 C -0.215 4.215 6 C -0.223 4.223 7 C -0.195 4.195 8 C 0.019 3.981 9 N -0.424 5.424 10 C 0.068 3.932 11 C -0.495 4.495 12 H 0.092 0.908 13 C -0.142 4.142 14 N -0.423 5.423 15 Si 0.730 3.270 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.139 4.139 20 H 0.116 0.884 21 H 0.118 0.882 22 H 0.132 0.868 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.203 0.797 28 H 0.221 0.779 29 H 0.090 0.910 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.003 -3.883 -4.467 6.637 hybrid contribution 0.610 1.431 -0.441 1.617 sum -2.392 -2.452 -4.908 5.985 Atomic orbital electron populations 1.23847 0.95657 1.01936 1.00885 1.22481 0.95724 0.97107 0.99766 1.22558 1.01534 0.98503 0.99847 1.85158 1.57541 1.24897 1.23810 1.20994 1.05064 0.96430 0.99047 1.20089 1.07420 0.97522 0.97278 1.19824 1.03830 0.97667 0.98200 1.18009 0.96773 0.87117 0.96230 1.41914 1.56570 1.21184 1.22717 1.17105 0.94502 0.90783 0.90801 1.19111 1.13898 1.25397 0.91094 0.90819 1.25784 0.95366 0.93465 0.99560 1.69847 1.21945 1.30877 1.19648 0.86360 0.81943 0.78596 0.80148 1.19816 1.20114 1.18647 1.20663 0.99895 0.95704 0.97608 0.88415 0.88191 0.86771 0.89824 0.89373 0.89244 0.89178 0.79720 0.77928 0.91002 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.01 0.42 -1.72 16 2 C -0.13 -1.77 9.52 -36.03 -0.34 -2.11 16 3 C -0.08 -1.24 4.77 36.01 0.17 -1.07 16 4 S -0.16 -3.22 21.89 -107.50 -2.35 -5.58 16 5 C -0.10 -2.47 6.10 -39.10 -0.24 -2.71 16 6 C -0.20 -4.48 9.36 -39.12 -0.37 -4.85 16 7 C -0.17 -3.81 9.86 -39.47 -0.39 -4.20 16 8 C 0.12 2.88 6.79 -83.22 -0.56 2.32 16 9 N -0.88 -17.34 8.98 32.75 0.29 -17.04 16 10 C 0.07 1.98 5.57 -106.66 -0.59 1.38 16 11 C -0.46 -12.02 8.48 -37.91 -0.32 -12.34 16 12 H 0.07 1.79 6.69 -52.49 -0.35 1.44 16 13 C 0.07 1.89 5.16 -17.33 -0.09 1.80 16 14 N -0.80 -21.02 10.97 55.54 0.61 -20.41 16 15 Si 0.90 18.77 29.59 -169.99 -5.03 13.74 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 C -0.11 -3.01 8.39 -38.74 -0.32 -3.34 16 20 H 0.10 1.12 7.84 -52.48 -0.41 0.71 16 21 H 0.10 0.96 8.06 -52.49 -0.42 0.53 16 22 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 23 H 0.08 1.34 7.38 -51.93 -0.38 0.96 16 24 H 0.09 1.38 7.73 -51.93 -0.40 0.97 16 25 H 0.09 1.79 5.83 -52.49 -0.31 1.48 16 26 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 27 H 0.38 6.17 8.83 -40.82 -0.36 5.81 16 28 H 0.39 7.52 7.05 -40.82 -0.29 7.23 16 29 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 30 H 0.13 3.50 6.23 -52.49 -0.33 3.17 16 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -28.13 271.14 -8.27 -36.40 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -3.23 Total: 15.65 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -2.65 Total: -26.84 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.90 Total: -37.45 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.35 Total: -5.58 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.13 -8.27 -36.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308564650.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.757 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds