Wall clock time and date at job start Mon Mar 30 2020 21:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47232 * 2 1 4 4 H 1.09000 * 109.47430 * 55.00244 * 3 2 1 5 5 N 1.46895 * 109.47360 * 294.99806 * 3 2 1 6 6 C 1.46899 * 111.00055 * 296.54383 * 5 3 2 7 7 C 1.50706 * 109.47133 * 174.99883 * 3 2 1 8 8 C 1.38298 * 119.92700 * 340.01109 * 7 3 2 9 9 C 1.38104 * 120.06855 * 179.72799 * 8 7 3 10 10 C 1.38884 * 119.92462 * 0.54416 * 9 8 7 11 11 O 1.35753 * 120.06412 * 179.75052 * 10 9 8 12 12 C 1.34838 * 116.99630 * 174.03458 * 11 10 9 13 13 H 1.07994 * 120.00080 * 5.09854 * 12 11 10 14 14 C 1.38652 * 119.99751 * 185.09544 * 12 11 10 15 15 N 1.31561 * 119.99991 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99990 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46997 * 120.00359 * 16 14 12 19 19 H 1.48500 * 109.47248 * 240.00285 * 16 14 12 20 20 C 1.38883 * 119.86499 * 359.72831 * 10 9 8 21 21 C 1.38090 * 119.92947 * 0.02562 * 20 10 9 22 22 H 1.09001 * 109.47175 * 300.00031 * 1 2 3 23 23 H 1.09003 * 109.47229 * 59.99984 * 1 2 3 24 24 H 1.09001 * 109.47610 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47213 * 239.99597 * 2 1 3 26 26 H 1.09007 * 109.46515 * 119.99956 * 2 1 3 27 27 H 1.00898 * 111.00310 * 60.49898 * 5 3 2 28 28 H 1.09005 * 109.47302 * 185.07010 * 6 5 3 29 29 H 1.09004 * 109.47103 * 305.06922 * 6 5 3 30 30 H 1.09003 * 109.47129 * 65.06353 * 6 5 3 31 31 H 1.08003 * 119.96922 * 0.02562 * 8 7 3 32 32 H 1.07995 * 120.03662 * 180.27297 * 9 8 7 33 33 H 0.96999 * 119.99556 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.03217 * 179.97438 * 20 10 9 35 35 H 1.08003 * 119.96827 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6515 2.0992 -1.2552 6 6 2.2865 1.4479 -2.4087 7 6 3.5419 1.4442 0.1239 8 6 4.1945 0.3310 0.6215 9 6 5.5712 0.3273 0.7310 10 6 6.2994 1.4474 0.3513 11 8 7.6524 1.4487 0.4625 12 6 8.3065 2.5166 -0.0373 13 1 7.7507 3.3573 -0.4254 14 6 9.6928 2.5354 -0.0528 15 7 10.3699 1.5112 0.4196 16 14 10.5991 4.0145 -0.7459 17 1 9.6150 5.0248 -1.2107 18 1 11.4568 4.6091 0.3105 19 1 11.4459 3.5857 -1.8879 20 6 5.6406 2.5658 -0.1427 21 6 4.2643 2.5612 -0.2545 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8901 27 1 0.6479 2.1180 -1.3579 28 1 2.0547 2.0074 -3.3150 29 1 3.3665 1.4235 -2.2630 30 1 1.9097 0.4295 -2.5039 31 1 3.6274 -0.5382 0.9202 32 1 6.0806 -0.5438 1.1155 33 1 11.3397 1.5242 0.4083 34 1 6.2042 3.4383 -0.4383 35 1 3.7514 3.4305 -0.6390 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037708708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:39:14 Heat of formation + Delta-G solvation = -5.106374 kcal Electronic energy + Delta-G solvation = -16367.587668 eV Core-core repulsion = 13752.193849 eV Total energy + Delta-G solvation = -2615.393819 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.38584 -37.85693 -35.52463 -32.24187 -32.05481 -29.99238 -29.41924 -26.23831 -25.20576 -24.19283 -22.05143 -21.17884 -19.46820 -17.84514 -16.98365 -16.15965 -15.38674 -14.80994 -14.47423 -14.19919 -13.74482 -13.62552 -13.51283 -13.00762 -12.70394 -12.59841 -12.14652 -11.96150 -11.60716 -11.56192 -11.38810 -11.14753 -10.89351 -10.59351 -10.49920 -10.34241 -10.28710 -9.28039 -8.79080 -8.26525 -8.10119 -7.11005 -6.42190 -4.00758 2.27673 2.37886 3.14256 3.15896 3.21473 3.99416 4.41723 4.62072 4.96735 5.03096 5.06922 5.13668 5.33488 5.55043 5.57514 5.67158 5.68751 5.75580 5.86346 5.88245 5.95012 6.09946 6.24186 6.29291 6.33090 6.47718 6.77067 6.94817 7.07494 7.11011 7.31514 7.47907 7.51148 7.60299 7.89099 8.03673 9.03964 9.74987 10.76127 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.048098 B = 0.005396 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.002040 B = 5188.165681 C = 5567.346990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.162 4.162 3 C 0.143 3.857 4 H 0.080 0.920 5 N -0.683 5.683 6 C 0.023 3.977 7 C -0.181 4.181 8 C -0.075 4.075 9 C -0.196 4.196 10 C 0.154 3.846 11 O -0.180 6.180 12 C -0.390 4.390 13 H 0.092 0.908 14 C 0.038 3.962 15 N -0.864 5.864 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.238 4.238 21 C -0.047 4.047 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.334 0.666 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.019 0.981 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.269 0.731 34 H 0.125 0.875 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.231 -0.528 -2.455 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C 0.033 3.967 4 H 0.098 0.902 5 N -0.312 5.312 6 C -0.127 4.127 7 C -0.182 4.182 8 C -0.094 4.094 9 C -0.215 4.215 10 C 0.100 3.900 11 O -0.084 6.084 12 C -0.467 4.467 13 H 0.110 0.890 14 C -0.166 4.166 15 N -0.500 5.500 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.257 4.257 21 C -0.066 4.066 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.152 0.848 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.038 0.962 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.337 -0.247 -2.290 14.521 hybrid contribution -0.014 -0.120 -0.425 0.442 sum -14.352 -0.367 -2.715 14.611 Atomic orbital electron populations 1.21796 0.96255 1.01468 1.01455 1.22340 0.95419 0.99359 1.02941 1.20238 0.92819 0.91653 0.91954 0.90238 1.60575 1.12934 1.55642 1.02080 1.22249 1.01579 0.96061 0.92770 1.19126 0.93324 0.95931 1.09805 1.20612 0.93175 0.97042 0.98566 1.20176 0.93241 0.97920 1.10195 1.19426 0.85073 0.93039 0.92450 1.83977 1.12776 1.42833 1.68810 1.21380 0.89241 0.95447 1.40592 0.89031 1.25283 0.95558 0.98662 0.97067 1.70053 1.07560 1.29485 1.42855 0.85654 0.79425 0.79809 0.78588 1.19084 1.20175 1.20174 1.21206 0.94674 0.99970 1.09846 1.20616 0.92775 0.97035 0.96158 0.92611 0.93182 0.92877 0.91561 0.90990 0.84818 0.92297 0.90449 0.96247 0.86972 0.86740 0.92142 0.85707 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.68 37.16 0.36 -1.04 16 2 C -0.16 -1.86 4.44 -26.74 -0.12 -1.98 16 3 C 0.14 1.92 2.96 -68.87 -0.20 1.72 16 4 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 5 N -0.68 -8.58 6.13 -115.25 -0.71 -9.28 16 6 C 0.02 0.29 9.87 60.06 0.59 0.89 16 7 C -0.18 -3.10 4.32 -104.57 -0.45 -3.55 16 8 C -0.08 -1.35 9.11 -39.61 -0.36 -1.71 16 9 C -0.20 -4.20 9.99 -39.39 -0.39 -4.60 16 10 C 0.15 3.78 6.65 -39.10 -0.26 3.52 16 11 O -0.18 -5.23 9.76 0.02 0.00 -5.23 16 12 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 13 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 14 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 15 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 16 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 C -0.24 -5.28 9.17 -39.40 -0.36 -5.64 16 21 C -0.05 -0.90 8.18 -39.61 -0.32 -1.22 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.43 6.78 -51.93 -0.35 0.07 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.82 6.35 -51.93 -0.33 0.49 16 26 H 0.07 0.84 6.35 -51.93 -0.33 0.51 16 27 H 0.33 3.47 7.23 -39.29 -0.28 3.18 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.21 6.06 -51.93 -0.31 0.89 16 30 H 0.02 0.23 6.54 -51.93 -0.34 -0.11 16 31 H 0.11 1.69 5.85 -52.48 -0.31 1.38 16 32 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 35 H 0.12 2.03 7.72 -52.48 -0.41 1.62 16 LS Contribution 282.45 15.07 4.26 4.26 Total: -1.00 -30.10 282.45 -6.52 -36.61 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.48 Total: 6.19 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -1.32 Total: -23.44 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.05 Total: -34.15 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.10 -6.52 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037708708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.509 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds