Wall clock time and date at job start Mon Mar 30 2020 21:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00160 * 2 1 4 4 H 1.48496 * 109.47438 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47362 * 300.00103 * 3 2 1 6 6 H 1.48497 * 109.47246 * 60.00202 * 3 2 1 7 7 C 1.37876 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00009 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00272 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47086 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46864 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47247 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47397 * 180.02562 * 12 11 10 14 14 C 1.46901 * 111.00187 * 179.97438 * 13 12 11 15 15 C 1.53950 * 113.57854 * 204.99899 * 14 13 12 16 16 C 1.52906 * 86.78208 * 220.58379 * 15 14 13 17 17 C 1.52913 * 121.13846 * 150.61759 * 16 15 14 18 18 C 1.53952 * 86.78179 * 100.82243 * 17 16 15 19 19 C 1.53068 * 121.06931 * 259.16126 * 16 15 14 20 20 C 1.52907 * 88.04368 * 24.89826 * 16 15 14 21 21 H 0.97010 * 120.00074 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46834 * 59.99914 * 9 7 2 23 23 H 1.09006 * 109.46759 * 300.00383 * 9 7 2 24 24 H 1.09004 * 109.47468 * 60.00163 * 10 9 7 25 25 H 1.08993 * 109.47379 * 299.99936 * 10 9 7 26 26 H 1.08998 * 109.47440 * 59.99996 * 11 10 9 27 27 H 1.09003 * 109.47377 * 299.99747 * 11 10 9 28 28 H 1.08998 * 109.47177 * 59.99500 * 12 11 10 29 29 H 1.09008 * 109.46540 * 299.99515 * 12 11 10 30 30 H 1.00904 * 111.00161 * 56.03873 * 13 12 11 31 31 H 1.09000 * 112.82259 * 336.08577 * 14 13 12 32 32 H 1.09003 * 113.66331 * 106.11540 * 15 14 13 33 33 H 1.09003 * 113.66300 * 335.05432 * 15 14 13 34 34 H 1.09000 * 113.66161 * 346.35132 * 17 16 15 35 35 H 1.09002 * 113.66537 * 215.28969 * 17 16 15 36 36 H 1.09002 * 113.58142 * 139.33940 * 18 17 16 37 37 H 1.09004 * 113.57653 * 270.05541 * 18 17 16 38 38 H 1.09006 * 113.66752 * 144.67391 * 19 16 15 39 39 H 1.09001 * 113.71350 * 13.57398 * 19 16 15 40 40 H 1.09008 * 113.66358 * 89.56934 * 20 16 15 41 41 H 1.08997 * 113.66794 * 220.62745 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0005 13 7 1.7398 -7.4222 -0.0018 14 6 2.6642 -8.5639 -0.0018 15 6 2.0583 -9.8468 -0.5992 16 6 2.7605 -10.6014 0.5302 17 6 2.1845 -11.9028 1.0894 18 6 3.2281 -12.6343 0.2257 19 6 4.0734 -11.3489 0.2839 20 6 2.7271 -9.3077 1.3446 21 1 -0.4851 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8718 -3.6044 -0.8904 26 1 0.8537 -5.0446 -0.8914 27 1 0.8532 -5.0451 0.8886 28 1 3.1004 -6.0924 0.8898 29 1 3.1015 -6.0922 -0.8902 30 1 1.1041 -7.4720 -0.7838 31 1 3.6443 -8.3142 -0.4083 32 1 2.4396 -10.0900 -1.5910 33 1 0.9705 -9.8853 -0.5409 34 1 1.1550 -12.0918 0.7852 35 1 2.3404 -12.0253 2.1612 36 1 3.6912 -13.4839 0.7276 37 1 2.8724 -12.8772 -0.7756 38 1 4.7611 -11.3155 1.1290 39 1 4.5509 -11.0961 -0.6627 40 1 1.8273 -9.1945 1.9493 41 1 3.6426 -9.1201 1.9057 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697709607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:40:21 Heat of formation + Delta-G solvation = 11.132610 kcal Electronic energy + Delta-G solvation = -16201.150909 eV Core-core repulsion = 13694.982881 eV Total energy + Delta-G solvation = -2506.168028 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.58433 -36.73228 -34.79226 -33.03079 -31.37302 -27.92209 -26.00872 -25.97710 -24.55753 -23.30650 -21.34962 -20.65214 -19.80115 -18.10264 -16.25052 -15.98162 -15.68896 -15.46585 -15.12272 -14.47449 -14.16563 -13.49809 -13.08930 -12.92283 -12.53359 -12.27522 -12.22566 -12.08468 -11.63102 -11.40574 -11.26596 -10.98168 -10.94737 -10.55297 -10.49026 -10.40123 -10.36288 -10.27021 -9.94933 -9.59470 -9.20820 -8.94990 -8.33273 -8.29905 -5.95551 -3.97563 3.33345 3.40518 3.44975 4.10779 4.19824 4.40646 4.44467 4.49939 4.54787 4.69372 4.78863 5.20486 5.21922 5.39845 5.41549 5.46716 5.48301 5.57617 5.59745 5.63417 5.70169 5.71868 5.84729 5.88692 5.96007 6.09554 6.15456 6.21289 6.34291 6.38127 6.56485 6.87198 7.01327 7.13846 7.30067 7.48124 7.74277 7.90299 8.05975 8.48962 9.10264 9.66188 11.15883 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.083706 B = 0.002950 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.424584 B = 9488.457195 C = 9624.790170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.680 5.680 14 C 0.062 3.938 15 C -0.118 4.118 16 C -0.106 4.106 17 C -0.126 4.126 18 C -0.140 4.140 19 C -0.118 4.118 20 C -0.112 4.112 21 H 0.259 0.741 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.339 0.661 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 -23.952 -0.064 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.310 5.310 14 C -0.049 4.049 15 C -0.156 4.156 16 C -0.107 4.107 17 C -0.163 4.163 18 C -0.178 4.178 19 C -0.155 4.155 20 C -0.151 4.151 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.404 -23.830 0.611 24.443 hybrid contribution 0.764 1.050 -0.929 1.597 sum 6.168 -22.780 -0.318 23.602 Atomic orbital electron populations 1.69983 1.06046 1.26381 1.51185 1.25040 0.94851 0.99248 0.95473 0.86553 0.80114 0.83892 0.77545 1.19780 1.21055 1.21021 1.21335 0.93051 0.91224 1.50100 0.92734 1.19100 0.94045 0.91371 0.97147 1.21586 0.99066 0.94004 1.00036 1.21643 0.97900 0.93912 1.01926 1.22117 0.96198 0.88698 0.99953 1.60655 1.19418 1.01551 1.49423 1.22976 0.95305 0.89280 0.97300 1.22948 1.00554 0.95078 0.96985 1.22323 0.97094 0.93181 0.98106 1.22723 0.98666 0.95394 0.99549 1.22821 0.97866 0.96753 1.00344 1.22686 0.95385 0.95630 1.01848 1.22908 1.02256 0.93548 0.96359 0.93120 0.96739 0.96606 0.93468 0.93733 0.92800 0.91693 0.91366 0.95686 0.84222 0.91350 0.91672 0.89125 0.91492 0.90057 0.91701 0.90403 0.89911 0.91550 0.89135 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 12 C 0.06 0.87 5.53 -3.83 -0.02 0.85 16 13 N -0.68 -8.78 6.56 -105.69 -0.69 -9.48 16 14 C 0.06 0.68 4.14 -66.73 -0.28 0.40 16 15 C -0.12 -1.09 7.41 -26.28 -0.19 -1.29 16 16 C -0.11 -0.94 1.11 -154.63 -0.17 -1.11 16 17 C -0.13 -1.00 7.84 -26.28 -0.21 -1.20 16 18 C -0.14 -1.01 8.08 -25.75 -0.21 -1.21 16 19 C -0.12 -0.93 7.85 -26.20 -0.21 -1.14 16 20 C -0.11 -1.18 7.64 -26.28 -0.20 -1.38 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.02 0.36 8.13 -51.92 -0.42 -0.06 16 30 H 0.34 4.10 8.54 -39.29 -0.34 3.76 16 31 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -30.24 329.49 -10.23 -40.46 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.89 Total: -1.91 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.32 Total: -24.24 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.04 Total: -36.33 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.24 -10.23 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697709607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.594 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds