Wall clock time and date at job start Mon Mar 30 2020 21:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38628 * 120.39942 * 2 1 4 4 C 1.38622 * 118.56706 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.39456 * 179.97438 * 4 3 2 6 6 N 1.32258 * 119.20724 * 0.02562 * 4 3 2 7 7 C 1.32556 * 120.73245 * 359.97438 * 6 4 3 8 8 S 1.76205 * 119.21975 * 179.97438 * 7 6 4 9 9 C 1.80998 * 99.99783 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47199 * 55.00325 * 9 8 7 11 11 C 1.52996 * 109.47627 * 295.00036 * 9 8 7 12 12 C 1.50699 * 109.47116 * 174.99974 * 9 8 7 13 13 H 1.07999 * 120.00186 * 5.61391 * 12 9 8 14 14 C 1.37882 * 119.99976 * 185.61467 * 12 9 8 15 15 N 1.31517 * 119.99767 * 197.60099 * 14 12 9 16 16 Si 1.86797 * 120.00313 * 17.60581 * 14 12 9 17 17 H 1.48498 * 109.47351 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.46671 * 299.99907 * 16 14 12 19 19 H 1.48503 * 109.47124 * 59.99382 * 16 14 12 20 20 N 1.32266 * 120.39999 * 180.27840 * 2 1 3 21 21 H 1.08997 * 109.47296 * 89.99767 * 1 2 3 22 22 H 1.09005 * 109.47292 * 209.99546 * 1 2 3 23 23 H 1.09002 * 109.47232 * 329.99680 * 1 2 3 24 24 H 1.07999 * 120.71094 * 0.03003 * 3 2 1 25 25 H 1.09000 * 109.47175 * 270.02219 * 5 4 3 26 26 H 1.09002 * 109.46968 * 30.02407 * 5 4 3 27 27 H 1.09002 * 109.46768 * 150.02245 * 5 4 3 28 28 H 1.08996 * 109.47400 * 186.80318 * 11 9 8 29 29 H 1.08993 * 109.47068 * 306.81064 * 11 9 8 30 30 H 1.09007 * 109.46603 * 66.80359 * 11 9 8 31 31 H 0.97004 * 120.00142 * 354.70991 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1957 0.0000 4 6 3.5939 1.1514 -0.0005 5 6 4.3976 2.4263 -0.0011 6 7 4.2020 -0.0231 -0.0016 7 6 3.5017 -1.1486 -0.0015 8 16 4.3529 -2.6914 -0.0036 9 6 2.9440 -3.8276 -0.0020 10 1 2.2899 -3.5965 -0.8428 11 6 2.1663 -3.6740 1.3065 12 6 3.4414 -5.2446 -0.1273 13 1 4.5018 -5.4483 -0.1093 14 6 2.5425 -6.2811 -0.2649 15 7 2.9237 -7.5177 -0.0298 16 14 0.7834 -5.9290 -0.7855 17 1 0.0245 -7.2033 -0.8589 18 1 0.1440 -5.0292 0.2079 19 1 0.7832 -5.2745 -2.1185 20 7 2.1762 -1.1408 -0.0055 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8901 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.6866 2.1413 0.0005 25 1 4.5906 2.7336 -1.0290 26 1 3.8388 3.2082 0.5131 27 1 5.3446 2.2590 0.5120 28 1 1.3919 -4.4390 1.3610 29 1 2.8479 -3.7862 2.1496 30 1 1.7050 -2.6869 1.3412 31 1 3.8544 -7.7095 0.1654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052076607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:44:05 Heat of formation + Delta-G solvation = 30.278254 kcal Electronic energy + Delta-G solvation = -14572.547645 eV Core-core repulsion = 12172.870606 eV Total energy + Delta-G solvation = -2399.677039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64129 -34.73760 -33.98965 -33.04520 -31.01574 -29.17759 -27.47689 -24.89898 -24.11772 -21.69002 -20.87212 -17.81780 -17.38620 -16.80003 -15.45618 -15.19118 -14.66244 -13.74900 -13.68520 -13.49726 -13.20286 -12.76566 -12.61446 -12.54912 -12.13575 -12.11852 -11.76337 -11.35436 -10.69926 -10.48680 -10.26206 -10.06696 -9.81137 -9.53619 -9.42369 -8.94183 -8.88222 -8.36043 -7.05122 -6.60799 -4.24194 1.06877 1.31817 2.02866 3.24398 3.36107 3.40091 3.58827 3.86971 4.31982 4.39925 4.44931 4.79251 5.14249 5.21901 5.22832 5.29406 5.43998 5.53213 5.56652 5.76277 5.92376 5.98153 6.37704 6.50528 6.53974 6.69912 6.99897 7.25288 7.28950 7.72075 8.23056 8.26678 8.70797 9.42591 10.80310 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.007773 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.320984 B = 3601.563705 C = 4240.838804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.186 3.814 3 C -0.259 4.259 4 C 0.183 3.817 5 C -0.102 4.102 6 N -0.518 5.518 7 C 0.310 3.690 8 S -0.015 6.015 9 C 0.059 3.941 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.598 4.598 13 H 0.065 0.935 14 C 0.047 3.953 15 N -0.894 5.894 16 Si 1.043 2.957 17 H -0.283 1.283 18 H -0.270 1.270 19 H -0.281 1.281 20 N -0.520 5.520 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.139 0.861 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 18.067 0.236 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.036 3.964 3 C -0.286 4.286 4 C 0.033 3.967 5 C -0.159 4.159 6 N -0.237 5.237 7 C -0.063 4.063 8 S 0.226 5.774 9 C -0.070 4.070 10 H 0.071 0.929 11 C -0.208 4.208 12 C -0.638 4.638 13 H 0.084 0.916 14 C -0.161 4.161 15 N -0.527 5.527 16 Si 0.870 3.130 17 H -0.208 1.208 18 H -0.196 1.196 19 H -0.207 1.207 20 N -0.240 5.240 21 H 0.102 0.898 22 H 0.101 0.899 23 H 0.096 0.904 24 H 0.157 0.843 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.709 16.098 -0.031 16.520 hybrid contribution -0.166 1.836 0.218 1.856 sum -3.875 17.934 0.188 18.349 Atomic orbital electron populations 1.20763 0.88183 1.03810 1.03509 1.21753 0.97374 0.88420 0.88846 1.22285 0.95533 0.99933 1.10838 1.21697 0.91606 0.94007 0.89373 1.20725 1.00102 0.91734 1.03348 1.68463 1.40348 0.97389 1.17515 1.25666 0.89382 0.98897 0.92338 1.85968 1.15217 0.89043 1.87186 1.21284 0.92079 0.95597 0.98067 0.92935 1.22456 1.00114 1.00626 0.97624 1.21544 0.95618 0.88567 1.58061 0.91646 1.25737 1.05297 0.92321 0.92788 1.70862 1.19349 1.20437 1.42026 0.84060 0.75389 0.76005 0.77501 1.20847 1.19562 1.20694 1.68871 1.08235 1.29500 1.17346 0.89838 0.89859 0.90427 0.84338 0.89971 0.90433 0.90100 0.92054 0.93582 0.93228 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.21 36.00 0.37 -0.82 16 2 C 0.19 2.88 6.82 -82.27 -0.56 2.32 16 3 C -0.26 -3.46 9.53 -39.30 -0.37 -3.83 16 4 C 0.18 2.71 6.82 -82.26 -0.56 2.15 16 5 C -0.10 -1.01 10.22 36.01 0.37 -0.64 16 6 N -0.52 -9.79 10.34 -9.67 -0.10 -9.89 16 7 C 0.31 6.46 7.69 -90.84 -0.70 5.76 16 8 S -0.01 -0.33 21.62 -107.50 -2.32 -2.66 16 9 C 0.06 1.47 1.71 -27.89 -0.05 1.42 16 10 H 0.05 1.33 6.60 -51.91 -0.34 0.99 16 11 C -0.15 -3.44 8.57 37.16 0.32 -3.13 16 12 C -0.60 -16.85 8.84 -34.44 -0.30 -17.16 16 13 H 0.07 1.98 7.96 -52.49 -0.42 1.56 16 14 C 0.05 1.33 5.29 -17.82 -0.09 1.23 16 15 N -0.89 -26.93 13.70 55.43 0.76 -26.17 16 16 Si 1.04 24.92 26.29 -169.99 -4.47 20.45 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -5.97 5.78 56.52 0.33 -5.64 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 N -0.52 -10.22 6.78 -9.67 -0.07 -10.29 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 24 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.44 4.90 -51.93 -0.25 1.18 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.06 5.76 -51.93 -0.30 0.76 16 31 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -31.71 273.32 -7.59 -39.30 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -3.92 Total: -2.18 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.59 Total: -12.69 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.59 Total: -46.34 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.47 Total: 20.45 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.32 Total: -2.66 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.71 -7.59 -39.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052076607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.577 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds