Wall clock time and date at job start Mon Mar 30 2020 21:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38628 * 120.39942 * 2 1 4 4 C 1.38622 * 118.56706 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.39456 * 179.97438 * 4 3 2 6 6 N 1.32258 * 119.20724 * 0.02562 * 4 3 2 7 7 C 1.32556 * 120.73245 * 359.97438 * 6 4 3 8 8 S 1.76205 * 119.21975 * 179.97438 * 7 6 4 9 9 C 1.80998 * 99.99783 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47199 * 55.00325 * 9 8 7 11 11 C 1.52996 * 109.47627 * 295.00036 * 9 8 7 12 12 C 1.50699 * 109.47116 * 174.99974 * 9 8 7 13 13 H 1.07999 * 120.00186 * 5.61391 * 12 9 8 14 14 C 1.37882 * 119.99976 * 185.61467 * 12 9 8 15 15 N 1.31517 * 119.99767 * 197.60099 * 14 12 9 16 16 Si 1.86797 * 120.00313 * 17.60581 * 14 12 9 17 17 H 1.48498 * 109.47351 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.46671 * 299.99907 * 16 14 12 19 19 H 1.48503 * 109.47124 * 59.99382 * 16 14 12 20 20 N 1.32266 * 120.39999 * 180.27840 * 2 1 3 21 21 H 1.08997 * 109.47296 * 89.99767 * 1 2 3 22 22 H 1.09005 * 109.47292 * 209.99546 * 1 2 3 23 23 H 1.09002 * 109.47232 * 329.99680 * 1 2 3 24 24 H 1.07999 * 120.71094 * 0.03003 * 3 2 1 25 25 H 1.09000 * 109.47175 * 270.02219 * 5 4 3 26 26 H 1.09002 * 109.46968 * 30.02407 * 5 4 3 27 27 H 1.09002 * 109.46768 * 150.02245 * 5 4 3 28 28 H 1.08996 * 109.47400 * 186.80318 * 11 9 8 29 29 H 1.08993 * 109.47068 * 306.81064 * 11 9 8 30 30 H 1.09007 * 109.46603 * 66.80359 * 11 9 8 31 31 H 0.97004 * 120.00142 * 354.70991 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1957 0.0000 4 6 3.5939 1.1514 -0.0005 5 6 4.3976 2.4263 -0.0011 6 7 4.2020 -0.0231 -0.0016 7 6 3.5017 -1.1486 -0.0015 8 16 4.3529 -2.6914 -0.0036 9 6 2.9440 -3.8276 -0.0020 10 1 2.2899 -3.5965 -0.8428 11 6 2.1663 -3.6740 1.3065 12 6 3.4414 -5.2446 -0.1273 13 1 4.5018 -5.4483 -0.1093 14 6 2.5425 -6.2811 -0.2649 15 7 2.9237 -7.5177 -0.0298 16 14 0.7834 -5.9290 -0.7855 17 1 0.0245 -7.2033 -0.8589 18 1 0.1440 -5.0292 0.2079 19 1 0.7832 -5.2745 -2.1185 20 7 2.1762 -1.1408 -0.0055 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8901 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.6866 2.1413 0.0005 25 1 4.5906 2.7336 -1.0290 26 1 3.8388 3.2082 0.5131 27 1 5.3446 2.2590 0.5120 28 1 1.3919 -4.4390 1.3610 29 1 2.8479 -3.7862 2.1496 30 1 1.7050 -2.6869 1.3412 31 1 3.8544 -7.7095 0.1654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052076607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:44:04 Heat of formation + Delta-G solvation = 9.832769 kcal Electronic energy + Delta-G solvation = -14573.434228 eV Core-core repulsion = 12172.870606 eV Total energy + Delta-G solvation = -2400.563622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.90499 -36.30390 -35.68314 -34.25822 -33.05051 -30.26201 -28.38853 -26.95037 -25.49025 -23.22884 -22.44954 -19.84926 -18.65371 -18.40880 -16.80799 -16.49587 -16.27316 -15.56979 -15.05871 -14.69133 -14.31582 -14.25740 -13.94587 -13.70795 -13.52956 -13.35678 -13.16464 -12.98118 -12.50348 -12.29459 -11.85668 -11.52848 -11.41292 -11.26967 -10.90840 -10.79633 -10.51753 -10.23135 -8.89400 -8.73843 -6.52761 -0.20042 0.13392 0.43060 1.42478 1.48031 1.50221 1.73237 2.41156 2.61186 2.95305 3.15879 3.43074 3.61553 4.15497 4.29837 4.41841 4.46212 4.57762 4.70133 4.72372 4.76247 4.82401 4.89249 4.95388 5.06054 5.19130 5.36953 5.51455 5.64309 5.90012 6.08208 6.38157 6.96504 7.22378 8.51496 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.007773 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.320984 B = 3601.563705 C = 4240.838804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.166 3.834 3 C -0.231 4.231 4 C 0.167 3.833 5 C -0.097 4.097 6 N -0.541 5.541 7 C 0.295 3.705 8 S -0.060 6.060 9 C 0.068 3.932 10 H 0.049 0.951 11 C -0.137 4.137 12 C -0.605 4.605 13 H 0.028 0.972 14 C 0.001 3.999 15 N -0.921 5.921 16 Si 1.080 2.920 17 H -0.280 1.280 18 H -0.239 1.239 19 H -0.267 1.267 20 N -0.548 5.548 21 H 0.097 0.903 22 H 0.071 0.929 23 H 0.116 0.884 24 H 0.191 0.809 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 22.021 0.144 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.018 3.982 3 C -0.257 4.257 4 C 0.019 3.981 5 C -0.154 4.154 6 N -0.261 5.261 7 C -0.080 4.080 8 S 0.179 5.821 9 C -0.062 4.062 10 H 0.067 0.933 11 C -0.197 4.197 12 C -0.644 4.644 13 H 0.046 0.954 14 C -0.200 4.200 15 N -0.556 5.556 16 Si 0.900 3.100 17 H -0.206 1.206 18 H -0.163 1.163 19 H -0.192 1.192 20 N -0.268 5.268 21 H 0.116 0.884 22 H 0.090 0.910 23 H 0.134 0.866 24 H 0.208 0.792 25 H 0.116 0.884 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.236 20.108 -0.113 21.054 hybrid contribution 0.670 0.866 0.239 1.121 sum -5.566 20.975 0.126 21.701 Atomic orbital electron populations 1.20916 0.85061 1.05154 1.04780 1.22585 0.99379 0.88044 0.88203 1.22864 0.94935 1.01297 1.06585 1.22605 0.93225 0.94014 0.88301 1.20887 0.99693 0.90084 1.04779 1.68395 1.41325 0.98234 1.18174 1.24946 0.89998 0.97974 0.95131 1.85844 1.15305 0.91565 1.89399 1.20989 0.92579 0.94012 0.98643 0.93299 1.22321 0.99550 1.01540 0.96249 1.21661 0.93959 0.91177 1.57564 0.95416 1.27150 1.09296 0.91682 0.91912 1.70982 1.18507 1.21721 1.44360 0.83635 0.71104 0.76735 0.78569 1.20574 1.16346 1.19232 1.68759 1.07718 1.32081 1.18280 0.88420 0.91026 0.86602 0.79166 0.88360 0.86767 0.90777 0.92371 0.94448 0.91329 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 10.21 71.23 0.73 -1.11 16 2 C 0.17 4.53 6.82 42.58 0.29 4.82 16 3 C -0.23 -5.02 9.53 22.45 0.21 -4.81 16 4 C 0.17 4.37 6.82 42.59 0.29 4.66 16 5 C -0.10 -1.52 10.22 71.24 0.73 -0.79 16 6 N -0.54 -19.87 10.34 -184.50 -1.91 -21.77 16 7 C 0.29 12.17 7.69 180.43 1.39 13.56 16 8 S -0.06 -2.83 21.62 -56.49 -1.22 -4.05 16 9 C 0.07 3.41 1.71 29.85 0.05 3.46 16 10 H 0.05 2.48 6.60 -2.39 -0.02 2.47 16 11 C -0.14 -6.34 8.57 71.98 0.62 -5.72 16 12 C -0.60 -35.47 8.84 25.60 0.23 -35.24 16 13 H 0.03 1.79 7.96 -2.91 -0.02 1.77 16 14 C 0.00 0.06 5.29 84.66 0.45 0.51 16 15 N -0.92 -57.46 13.70 21.45 0.29 -57.17 16 16 Si 1.08 49.87 26.29 68.60 1.80 51.67 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.24 -9.84 5.78 99.48 0.57 -9.26 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 N -0.55 -20.67 6.78 -184.51 -1.25 -21.92 16 21 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.12 1.19 8.10 -2.39 -0.02 1.17 16 24 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 25 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.11 0.97 8.10 -2.39 -0.02 0.96 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.06 2.67 4.90 -2.39 -0.01 2.66 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 2.88 5.76 -2.38 -0.01 2.87 16 31 H 0.26 16.23 8.73 -92.71 -0.81 15.42 16 Total: -1.00 -73.23 273.32 3.65 -69.58 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.96 Total: 4.32 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 4.98 Total: -20.66 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -2.87 Total: -100.86 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 1.80 Total: 51.67 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -1.22 Total: -4.05 kcal Total: -73.23 3.65 -69.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052076607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.415 kcal (2) G-P(sol) polarization free energy of solvation -73.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds