Wall clock time and date at job start Mon Mar 30 2020 21:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46281 * 2 1 4 4 C 1.53108 * 109.45822 * 240.02631 * 2 1 3 5 5 C 1.53280 * 109.08477 * 181.94444 * 4 2 1 6 6 C 1.52652 * 109.05874 * 56.20854 * 5 4 2 7 7 C 1.54487 * 109.75565 * 183.07263 * 6 5 4 8 8 C 1.55387 * 100.89395 * 204.94869 * 7 6 5 9 9 C 1.54418 * 102.29698 * 33.66532 * 8 7 6 10 10 C 1.53006 * 109.83123 * 98.15652 * 9 8 7 11 11 C 1.50693 * 109.91363 * 219.09867 * 9 8 7 12 12 H 1.08000 * 120.00456 * 359.75241 * 11 9 8 13 13 C 1.37881 * 119.99887 * 179.76099 * 11 9 8 14 14 N 1.31512 * 119.99848 * 180.02562 * 13 11 9 15 15 Si 1.86792 * 120.00000 * 359.97438 * 13 11 9 16 16 H 1.48503 * 109.47179 * 90.00150 * 15 13 11 17 17 H 1.48508 * 109.47104 * 210.00036 * 15 13 11 18 18 H 1.48497 * 109.47515 * 330.00038 * 15 13 11 19 19 O 1.43131 * 110.50248 * 66.85063 * 6 5 4 20 20 C 1.52564 * 110.39013 * 304.23456 * 6 5 4 21 21 O 1.42892 * 109.46578 * 119.97471 * 2 1 3 22 22 H 1.09005 * 109.47167 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46864 * 299.96764 * 1 2 3 24 24 H 1.08996 * 109.47441 * 59.97184 * 1 2 3 25 25 H 1.09003 * 109.53233 * 62.06354 * 4 2 1 26 26 H 1.08994 * 109.60189 * 301.86215 * 4 2 1 27 27 H 1.09001 * 109.53963 * 296.33006 * 5 4 2 28 28 H 1.09000 * 109.60197 * 176.12196 * 5 4 2 29 29 H 1.09005 * 111.13523 * 322.85312 * 7 6 5 30 30 H 1.09007 * 111.14050 * 87.04180 * 7 6 5 31 31 H 1.08997 * 110.83580 * 275.46623 * 8 7 6 32 32 H 1.08994 * 110.84101 * 151.87172 * 8 7 6 33 33 H 1.08994 * 109.47357 * 300.43519 * 10 9 8 34 34 H 1.08998 * 109.46865 * 60.43280 * 10 9 8 35 35 H 1.08994 * 109.46919 * 180.43105 * 10 9 8 36 36 H 0.96999 * 119.99758 * 180.02562 * 14 13 11 37 37 H 1.08992 * 109.47763 * 176.30683 * 20 6 5 38 38 H 1.09005 * 109.47535 * 296.31549 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2506 5 6 3.5720 -0.7590 -1.2176 6 6 4.0265 -1.4230 0.0797 7 6 5.5688 -1.4002 0.1655 8 6 5.8286 -2.6115 1.1034 9 6 4.6918 -3.5805 0.7119 10 6 5.2180 -4.6273 -0.2722 11 6 4.1515 -4.2618 1.9426 12 1 4.5713 -4.0379 2.9121 13 6 3.1211 -5.1711 1.8308 14 7 2.6491 -5.7654 2.9050 15 14 2.3945 -5.5580 0.1541 16 1 3.1320 -6.6941 -0.4548 17 1 0.9629 -5.9221 0.3069 18 1 2.5110 -4.3654 -0.7231 19 8 3.6576 -2.8059 0.0910 20 6 3.4312 -0.6997 1.2839 21 8 2.0062 -0.6731 1.1670 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5133 0.8903 24 1 -0.3634 0.5142 -0.8897 25 1 1.7076 -0.1868 -2.1405 26 1 1.6508 -1.7391 -1.2699 27 1 3.9628 0.2576 -1.2633 28 1 3.9421 -1.3304 -2.0688 29 1 6.0193 -1.5583 -0.8145 30 1 5.9240 -0.4725 0.6142 31 1 5.7441 -2.3170 2.1494 32 1 6.8034 -3.0557 0.9021 33 1 5.5982 -4.1291 -1.1639 34 1 6.0212 -5.1955 0.1969 35 1 4.4094 -5.3032 -0.5504 36 1 1.9245 -6.4054 2.8263 37 1 3.7111 -1.2240 2.1975 38 1 3.8120 0.3210 1.3195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401590708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:45:45 Heat of formation + Delta-G solvation = -92.486829 kcal Electronic energy + Delta-G solvation = -19215.285379 eV Core-core repulsion = 16443.760840 eV Total energy + Delta-G solvation = -2771.524539 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91202 -37.54923 -33.43999 -32.70875 -31.66406 -31.28392 -29.14191 -26.28862 -25.31263 -24.11884 -22.50462 -20.97497 -19.89278 -18.93870 -16.54424 -16.33576 -15.57604 -15.05041 -14.64371 -14.30601 -13.80343 -13.50031 -13.08336 -12.71827 -12.53993 -12.35498 -12.12460 -12.10208 -11.85191 -11.52974 -11.42926 -11.26196 -11.00246 -10.77262 -10.32708 -10.29294 -9.95860 -9.90472 -9.78386 -9.67627 -8.96173 -8.85480 -8.45285 -7.99556 -6.01222 -4.07990 3.42239 3.53064 3.75786 4.21338 4.61093 4.71852 5.10080 5.14832 5.16590 5.31149 5.39275 5.44537 5.48729 5.67329 5.77952 5.80545 5.84312 5.95786 6.05388 6.07804 6.14057 6.18619 6.22932 6.34756 6.37301 6.45055 6.49578 6.60667 6.64079 6.72445 6.82599 6.85524 7.35233 7.77004 7.77722 8.38481 8.56853 8.98765 9.65348 11.09957 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.011934 C = 0.009878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.138536 B = 2345.726215 C = 2833.983331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.047 0.953 4 C -0.146 4.146 5 C -0.111 4.111 6 C 0.074 3.926 7 C -0.148 4.148 8 C -0.129 4.129 9 C 0.190 3.810 10 C -0.146 4.146 11 C -0.521 4.521 12 H 0.075 0.925 13 C 0.087 3.913 14 N -0.895 5.895 15 Si 0.882 3.118 16 H -0.292 1.292 17 H -0.304 1.304 18 H -0.224 1.224 19 O -0.349 6.349 20 C 0.062 3.938 21 O -0.363 6.363 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.104 0.896 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 11.578 -8.280 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.065 0.935 4 C -0.183 4.183 5 C -0.149 4.149 6 C 0.033 3.967 7 C -0.186 4.186 8 C -0.167 4.167 9 C 0.152 3.848 10 C -0.203 4.203 11 C -0.558 4.558 12 H 0.093 0.907 13 C -0.117 4.117 14 N -0.532 5.532 15 Si 0.713 3.287 16 H -0.220 1.220 17 H -0.232 1.232 18 H -0.148 1.148 19 O -0.269 6.269 20 C -0.015 4.015 21 O -0.282 6.282 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.408 11.297 -8.150 14.001 hybrid contribution -0.017 -0.222 -0.865 0.893 sum 1.390 11.075 -9.015 14.348 Atomic orbital electron populations 1.21739 0.93755 1.03020 1.01567 1.21999 0.94745 0.94229 0.86362 0.93523 1.22167 0.96111 1.02537 0.97513 1.21619 0.95919 0.99594 0.97720 1.22293 0.92912 0.87420 0.94090 1.23184 0.95814 0.99234 1.00368 1.23052 0.99336 0.94989 0.99281 1.20121 0.84852 0.88546 0.91245 1.22287 1.00378 0.99506 0.98158 1.21085 1.19235 1.22924 0.92525 0.90741 1.24975 0.95340 0.94564 0.96813 1.69923 1.26604 1.27720 1.28955 0.86990 0.76512 0.79265 0.85909 1.22001 1.23246 1.14771 1.88819 1.44244 1.13163 1.80678 1.22913 0.80952 0.97739 0.99878 1.88042 1.20949 1.77613 1.41568 0.91643 0.92180 0.91739 0.91990 0.90191 0.91919 0.91390 0.91276 0.91427 0.91000 0.91785 0.94967 0.92214 0.93603 0.92745 0.87793 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.56 37.16 0.36 -1.63 16 2 C 0.08 1.35 3.25 -26.68 -0.09 1.26 16 3 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.15 -2.30 5.32 -26.53 -0.14 -2.44 16 5 C -0.11 -1.75 5.02 -26.76 -0.13 -1.88 16 6 C 0.07 1.37 0.73 -90.24 -0.07 1.31 16 7 C -0.15 -2.42 6.01 -24.68 -0.15 -2.57 16 8 C -0.13 -2.48 5.71 -24.72 -0.14 -2.63 16 9 C 0.19 4.44 0.78 -91.03 -0.07 4.37 16 10 C -0.15 -3.22 8.22 37.16 0.31 -2.92 16 11 C -0.52 -14.72 8.83 -34.44 -0.30 -15.02 16 12 H 0.07 2.26 7.77 -52.49 -0.41 1.85 16 13 C 0.09 2.58 5.45 -17.82 -0.10 2.48 16 14 N -0.89 -28.07 13.96 55.43 0.77 -27.30 16 15 Si 0.88 23.24 23.92 -169.99 -4.07 19.17 16 16 H -0.29 -7.48 6.87 56.52 0.39 -7.09 16 17 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 18 H -0.22 -5.75 5.37 56.52 0.30 -5.44 16 19 O -0.35 -8.14 6.77 -37.15 -0.25 -8.40 16 20 C 0.06 1.17 5.69 36.93 0.21 1.38 16 21 O -0.36 -7.33 10.41 -37.15 -0.39 -7.72 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.50 8.00 -51.93 -0.42 1.08 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 30 H 0.07 0.94 7.99 -51.93 -0.41 0.53 16 31 H 0.07 1.42 7.40 -51.93 -0.38 1.04 16 32 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.08 3.21 -51.93 -0.17 0.92 16 36 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 37 H 0.10 2.17 7.61 -51.93 -0.40 1.77 16 38 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -32.02 286.51 -6.41 -38.43 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.48 Total: -0.21 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.32 Total: -18.30 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.77 Total: -27.30 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.64 Total: -16.11 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.07 Total: 19.17 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.02 -6.41 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401590708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.053 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds