Wall clock time and date at job start Mon Mar 30 2020 21:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46827 * 2 1 4 4 C 1.50694 * 109.47217 * 239.99948 * 2 1 3 5 5 H 1.08006 * 119.99772 * 245.69839 * 4 2 1 6 6 C 1.37876 * 120.00496 * 65.69776 * 4 2 1 7 7 N 1.31515 * 119.99703 * 8.22448 * 6 4 2 8 8 Si 1.86796 * 120.00368 * 188.22354 * 6 4 2 9 9 H 1.48504 * 109.46984 * 94.98954 * 8 6 4 10 10 H 1.48493 * 109.47384 * 214.99101 * 8 6 4 11 11 H 1.48506 * 109.47055 * 334.99269 * 8 6 4 12 12 N 1.46897 * 109.46999 * 119.99621 * 2 1 3 13 13 C 1.46906 * 111.00111 * 176.04810 * 12 2 1 14 14 C 1.46899 * 111.00241 * 300.00342 * 12 2 1 15 15 C 1.53005 * 109.47419 * 170.65042 * 14 12 2 16 16 H 1.08999 * 109.30490 * 57.34718 * 15 14 12 17 17 C 1.52584 * 109.38681 * 297.59406 * 15 14 12 18 18 C 1.52584 * 110.72292 * 169.17350 * 17 15 14 19 19 C 1.53100 * 109.95316 * 70.67739 * 18 17 15 20 20 S 1.81750 * 108.84047 * 296.97142 * 19 18 17 21 21 C 1.53096 * 109.38925 * 177.09776 * 15 14 12 22 22 H 1.08997 * 109.47632 * 306.26485 * 1 2 3 23 23 H 1.09003 * 109.47145 * 66.26529 * 1 2 3 24 24 H 1.09006 * 109.47000 * 186.26115 * 1 2 3 25 25 H 0.96999 * 120.00041 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47300 * 189.17143 * 13 12 2 27 27 H 1.09000 * 109.46987 * 309.17675 * 13 12 2 28 28 H 1.08998 * 109.46926 * 69.17060 * 13 12 2 29 29 H 1.08997 * 109.47245 * 50.64469 * 14 12 2 30 30 H 1.09003 * 109.47013 * 290.64663 * 14 12 2 31 31 H 1.08996 * 109.22359 * 48.85644 * 17 15 14 32 32 H 1.08997 * 109.22306 * 289.49707 * 17 15 14 33 33 H 1.09000 * 109.38912 * 310.52963 * 18 17 15 34 34 H 1.08998 * 109.30909 * 190.77116 * 18 17 15 35 35 H 1.09001 * 109.57517 * 177.16508 * 19 18 17 36 36 H 1.09000 * 109.57760 * 56.78133 * 19 18 17 37 37 H 1.09003 * 109.57495 * 63.36794 * 21 15 14 38 38 H 1.08994 * 109.57897 * 302.97883 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5752 -1.6391 -1.1339 6 6 1.7989 -0.1749 -2.4793 7 7 1.2834 1.0297 -2.5924 8 14 2.2147 -1.1604 -4.0107 9 1 1.0030 -1.8782 -4.4817 10 1 2.6914 -0.2422 -5.0759 11 1 3.2803 -2.1444 -3.6920 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5485 -0.0263 2.4211 15 6 1.8770 -0.8967 3.6358 16 1 2.9506 -1.0824 3.6662 17 6 1.1360 -2.2257 3.5219 18 6 1.6409 -3.2167 4.5664 19 6 1.1846 -2.7827 5.9619 20 16 1.9325 -1.1723 6.3496 21 6 1.4507 -0.1685 4.9131 22 1 -0.3634 0.6078 0.8285 23 1 -0.3633 0.4136 -0.9408 24 1 -0.3633 -1.0216 0.1121 25 1 1.1195 1.4066 -3.4710 26 1 3.8106 -1.4482 1.9962 27 1 3.8125 -1.2067 0.2327 28 1 3.9193 0.1960 1.3233 29 1 0.4704 0.1221 2.3613 30 1 2.0432 0.9398 2.5220 31 1 1.2949 -2.6410 2.5267 32 1 0.0700 -2.0563 3.6734 33 1 2.7300 -3.2508 4.5361 34 1 1.2415 -4.2067 4.3467 35 1 1.5054 -3.5209 6.6970 36 1 0.0983 -2.6948 5.9800 37 1 0.3696 -0.0295 4.9108 38 1 1.9453 0.8015 4.9630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718290708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:48:07 Heat of formation + Delta-G solvation = -13.692619 kcal Electronic energy + Delta-G solvation = -16343.217062 eV Core-core repulsion = 13925.124778 eV Total energy + Delta-G solvation = -2418.092284 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.19421 -35.80418 -32.93649 -31.62646 -29.23440 -27.15816 -26.63523 -24.60684 -23.51516 -21.76151 -20.10383 -19.17140 -16.63751 -16.18416 -15.48339 -14.84658 -14.69365 -14.08512 -13.83984 -13.74263 -13.27418 -13.06712 -12.59213 -12.36127 -12.10838 -11.84836 -11.47909 -11.17751 -11.07412 -10.95588 -10.86876 -10.66498 -10.30038 -10.22284 -10.17398 -10.04620 -9.88696 -9.46229 -8.86289 -8.45376 -7.67173 -7.17647 -6.04930 -4.06151 1.81375 2.54458 3.29643 3.36871 3.39835 4.39882 4.75309 4.79490 4.88826 4.98667 5.27566 5.28544 5.32592 5.37524 5.52722 5.73168 5.75211 5.84030 5.93289 6.13048 6.20383 6.23181 6.32080 6.45598 6.57090 6.66712 6.76050 6.83550 6.97450 7.11525 7.44265 7.67205 7.81214 8.12410 8.26473 8.59588 9.01351 9.58008 11.04183 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.046341 B = 0.005236 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.065165 B = 5346.375264 C = 5519.819858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.210 3.790 3 H 0.004 0.996 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.058 3.942 15 C -0.083 4.083 16 H 0.080 0.920 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.077 4.077 20 S -0.285 6.285 21 C -0.070 4.070 22 H 0.011 0.989 23 H 0.068 0.932 24 H 0.036 0.964 25 H 0.260 0.740 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.022 0.978 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -4.937 13.638 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.022 0.978 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.114 4.114 14 C -0.072 4.072 15 C -0.103 4.103 16 H 0.098 0.902 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.225 4.225 20 S -0.058 6.058 21 C -0.219 4.219 22 H 0.030 0.970 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.035 -4.978 14.415 15.250 hybrid contribution -0.259 0.144 -1.874 1.897 sum -0.224 -4.834 12.541 13.442 Atomic orbital electron populations 1.21764 0.98214 0.98663 0.99762 1.19242 0.91786 0.92584 0.86027 0.97805 1.21115 1.35442 1.07841 0.89907 0.91841 1.24938 0.95470 0.94692 0.99036 1.69972 1.44948 1.14475 1.23701 0.86563 0.78578 0.79962 0.82783 1.20717 1.21424 1.19862 1.62093 1.09282 1.52437 1.01983 1.22261 0.88817 0.98391 1.01939 1.22131 1.00762 0.94116 0.90214 1.21361 1.01129 0.95381 0.92442 0.90183 1.21484 0.98973 0.94352 1.00680 1.21754 1.01951 0.99578 0.92738 1.23444 1.02542 0.95583 1.00973 1.86708 1.74655 1.11379 1.33012 1.23517 1.03991 1.00196 0.94194 0.97050 0.91358 0.94515 0.93008 0.93773 0.90258 0.97322 0.90926 0.96000 0.88656 0.92612 0.90893 0.91146 0.88413 0.90144 0.90003 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.69 37.16 0.32 -2.63 16 2 C 0.21 5.17 1.92 -68.87 -0.13 5.04 16 3 H 0.00 0.12 8.09 -51.93 -0.42 -0.30 16 4 C -0.50 -13.53 7.58 -34.44 -0.26 -13.79 16 5 H 0.06 1.70 6.71 -52.48 -0.35 1.35 16 6 C 0.06 1.64 5.17 -17.82 -0.09 1.55 16 7 N -0.89 -25.40 12.12 55.43 0.67 -24.73 16 8 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 N -0.53 -10.95 3.78 -236.28 -0.89 -11.84 16 13 C 0.03 0.67 9.02 60.07 0.54 1.21 16 14 C 0.06 1.01 4.17 -3.82 -0.02 0.99 16 15 C -0.08 -1.18 1.91 -90.78 -0.17 -1.35 16 16 H 0.08 1.20 6.43 -51.93 -0.33 0.87 16 17 C -0.12 -1.59 4.90 -27.16 -0.13 -1.73 16 18 C -0.12 -1.38 5.75 -26.89 -0.15 -1.53 16 19 C -0.08 -0.82 6.46 37.21 0.24 -0.58 16 20 S -0.28 -3.59 22.33 -107.50 -2.40 -5.99 16 21 C -0.07 -0.89 5.73 37.21 0.21 -0.68 16 22 H 0.01 0.23 6.55 -51.93 -0.34 -0.11 16 23 H 0.07 1.77 6.75 -51.93 -0.35 1.42 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.04 0.74 6.65 -51.93 -0.35 0.40 16 27 H 0.08 1.67 6.06 -51.93 -0.31 1.36 16 28 H 0.01 0.16 8.08 -51.93 -0.42 -0.26 16 29 H 0.07 1.28 5.99 -51.93 -0.31 0.97 16 30 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.09 1.51 7.34 -51.93 -0.38 1.13 16 32 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 300.43 15.07 4.53 4.53 Total: -1.00 -27.54 300.43 -9.26 -36.80 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.50 Total: -1.35 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 0.36 Total: -13.50 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.22 Total: -36.57 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.40 Total: -5.99 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.54 -9.26 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718290708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.107 kcal (2) G-P(sol) polarization free energy of solvation -27.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds