Wall clock time and date at job start Mon Mar 30 2020 21:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46827 * 2 1 4 4 C 1.50694 * 109.47217 * 239.99948 * 2 1 3 5 5 H 1.08006 * 119.99772 * 245.69839 * 4 2 1 6 6 C 1.37876 * 120.00496 * 65.69776 * 4 2 1 7 7 N 1.31515 * 119.99703 * 8.22448 * 6 4 2 8 8 Si 1.86796 * 120.00368 * 188.22354 * 6 4 2 9 9 H 1.48504 * 109.46984 * 94.98954 * 8 6 4 10 10 H 1.48493 * 109.47384 * 214.99101 * 8 6 4 11 11 H 1.48506 * 109.47055 * 334.99269 * 8 6 4 12 12 N 1.46897 * 109.46999 * 119.99621 * 2 1 3 13 13 C 1.46906 * 111.00111 * 176.04810 * 12 2 1 14 14 C 1.46899 * 111.00241 * 300.00342 * 12 2 1 15 15 C 1.53005 * 109.47419 * 170.65042 * 14 12 2 16 16 H 1.08999 * 109.30490 * 57.34718 * 15 14 12 17 17 C 1.52584 * 109.38681 * 297.59406 * 15 14 12 18 18 C 1.52584 * 110.72292 * 169.17350 * 17 15 14 19 19 C 1.53100 * 109.95316 * 70.67739 * 18 17 15 20 20 S 1.81750 * 108.84047 * 296.97142 * 19 18 17 21 21 C 1.53096 * 109.38925 * 177.09776 * 15 14 12 22 22 H 1.08997 * 109.47632 * 306.26485 * 1 2 3 23 23 H 1.09003 * 109.47145 * 66.26529 * 1 2 3 24 24 H 1.09006 * 109.47000 * 186.26115 * 1 2 3 25 25 H 0.96999 * 120.00041 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47300 * 189.17143 * 13 12 2 27 27 H 1.09000 * 109.46987 * 309.17675 * 13 12 2 28 28 H 1.08998 * 109.46926 * 69.17060 * 13 12 2 29 29 H 1.08997 * 109.47245 * 50.64469 * 14 12 2 30 30 H 1.09003 * 109.47013 * 290.64663 * 14 12 2 31 31 H 1.08996 * 109.22359 * 48.85644 * 17 15 14 32 32 H 1.08997 * 109.22306 * 289.49707 * 17 15 14 33 33 H 1.09000 * 109.38912 * 310.52963 * 18 17 15 34 34 H 1.08998 * 109.30909 * 190.77116 * 18 17 15 35 35 H 1.09001 * 109.57517 * 177.16508 * 19 18 17 36 36 H 1.09000 * 109.57760 * 56.78133 * 19 18 17 37 37 H 1.09003 * 109.57495 * 63.36794 * 21 15 14 38 38 H 1.08994 * 109.57897 * 302.97883 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5752 -1.6391 -1.1339 6 6 1.7989 -0.1749 -2.4793 7 7 1.2834 1.0297 -2.5924 8 14 2.2147 -1.1604 -4.0107 9 1 1.0030 -1.8782 -4.4817 10 1 2.6914 -0.2422 -5.0759 11 1 3.2803 -2.1444 -3.6920 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5485 -0.0263 2.4211 15 6 1.8770 -0.8967 3.6358 16 1 2.9506 -1.0824 3.6662 17 6 1.1360 -2.2257 3.5219 18 6 1.6409 -3.2167 4.5664 19 6 1.1846 -2.7827 5.9619 20 16 1.9325 -1.1723 6.3496 21 6 1.4507 -0.1685 4.9131 22 1 -0.3634 0.6078 0.8285 23 1 -0.3633 0.4136 -0.9408 24 1 -0.3633 -1.0216 0.1121 25 1 1.1195 1.4066 -3.4710 26 1 3.8106 -1.4482 1.9962 27 1 3.8125 -1.2067 0.2327 28 1 3.9193 0.1960 1.3233 29 1 0.4704 0.1221 2.3613 30 1 2.0432 0.9398 2.5220 31 1 1.2949 -2.6410 2.5267 32 1 0.0700 -2.0563 3.6734 33 1 2.7300 -3.2508 4.5361 34 1 1.2415 -4.2067 4.3467 35 1 1.5054 -3.5209 6.6970 36 1 0.0983 -2.6948 5.9800 37 1 0.3696 -0.0295 4.9108 38 1 1.9453 0.8015 4.9630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718290708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:48:06 Heat of formation + Delta-G solvation = -28.386689 kcal Electronic energy + Delta-G solvation = -16343.854245 eV Core-core repulsion = 13925.124778 eV Total energy + Delta-G solvation = -2418.729467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.61504 -37.23050 -34.72489 -32.92166 -31.07667 -28.49213 -27.91223 -26.47573 -25.07252 -22.86452 -21.64345 -20.64393 -18.39522 -17.51253 -17.08695 -16.23768 -15.99438 -15.50513 -15.41518 -15.13779 -14.42328 -14.26115 -14.08670 -13.93202 -13.50200 -13.17939 -13.03508 -12.80652 -12.72183 -12.52458 -12.20198 -12.13002 -12.04902 -11.99567 -11.85253 -11.42532 -11.17233 -10.83555 -10.53754 -10.52563 -8.91081 -8.65301 -8.13734 -6.21601 0.87084 1.42060 1.43778 1.53608 1.60453 2.42964 3.17518 3.35682 3.71689 3.90768 3.98413 4.12792 4.25420 4.35569 4.51554 4.55285 4.61263 4.71461 4.72882 4.75620 4.86137 4.92890 4.95960 5.01323 5.08928 5.13559 5.20926 5.28887 5.43352 5.49907 5.54652 5.72205 5.75350 6.21448 6.38248 6.75962 6.94565 7.46843 8.95056 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.046341 B = 0.005236 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.065165 B = 5346.375264 C = 5519.819858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.037 1.037 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.267 1.267 12 N -0.533 5.533 13 C 0.039 3.961 14 C 0.060 3.940 15 C -0.071 4.071 16 H 0.074 0.926 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.069 4.069 20 S -0.304 6.304 21 C -0.065 4.065 22 H 0.031 0.969 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.261 0.739 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.002 0.998 29 H 0.070 0.930 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 -6.443 14.796 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H -0.020 1.020 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.191 1.191 12 N -0.257 5.257 13 C -0.109 4.109 14 C -0.070 4.070 15 C -0.091 4.091 16 H 0.092 0.908 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.217 4.217 20 S -0.077 6.077 21 C -0.214 4.214 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.021 0.979 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.079 -6.496 15.594 16.893 hybrid contribution -0.208 0.617 -2.171 2.267 sum -0.288 -5.879 13.423 14.657 Atomic orbital electron populations 1.21573 0.97360 0.99101 0.99097 1.19052 0.92433 0.90432 0.87449 1.01952 1.21392 1.35282 1.07717 0.91031 0.92154 1.25700 0.95488 0.95508 1.01961 1.70091 1.46050 1.15873 1.24304 0.85571 0.78531 0.78595 0.79112 1.20187 1.21274 1.19127 1.62053 1.09903 1.51947 1.01774 1.22224 0.88157 0.98536 1.01974 1.22182 1.00377 0.94359 0.90075 1.21226 1.00857 0.95393 0.91639 0.90781 1.21422 0.99213 0.94270 1.00285 1.21687 1.01669 0.99655 0.92388 1.23510 1.02964 0.94406 1.00821 1.86831 1.75143 1.13002 1.32738 1.23413 1.04458 1.00163 0.93323 0.94972 0.94124 0.93930 0.93024 0.90796 0.92251 0.97916 0.91118 0.96714 0.90979 0.92239 0.91335 0.89461 0.86514 0.89157 0.89243 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.35 8.69 71.98 0.63 -4.73 16 2 C 0.21 10.72 1.92 44.17 0.08 10.81 16 3 H -0.04 -2.14 8.09 -2.38 -0.02 -2.16 16 4 C -0.52 -28.01 7.58 25.60 0.19 -27.82 16 5 H 0.06 3.26 6.71 -2.91 -0.02 3.24 16 6 C 0.01 0.67 5.17 84.65 0.44 1.10 16 7 N -0.92 -53.59 12.12 21.45 0.26 -53.33 16 8 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 12 N -0.53 -21.84 3.78 -901.46 -3.40 -25.24 16 13 C 0.04 1.53 9.02 127.69 1.15 2.68 16 14 C 0.06 2.04 4.17 86.30 0.36 2.40 16 15 C -0.07 -1.90 1.91 -10.90 -0.02 -1.92 16 16 H 0.07 2.10 6.43 -2.39 -0.02 2.08 16 17 C -0.11 -2.87 4.90 30.32 0.15 -2.72 16 18 C -0.12 -2.28 5.75 30.49 0.18 -2.11 16 19 C -0.07 -1.24 6.46 72.02 0.46 -0.78 16 20 S -0.30 -6.96 22.33 -56.49 -1.26 -8.22 16 21 C -0.06 -1.52 5.73 72.01 0.41 -1.11 16 22 H 0.03 1.34 6.55 -2.39 -0.02 1.32 16 23 H 0.04 2.13 6.75 -2.39 -0.02 2.11 16 24 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 26 H 0.07 2.40 6.65 -2.39 -0.02 2.38 16 27 H 0.06 2.52 6.06 -2.39 -0.01 2.51 16 28 H 0.00 0.09 8.08 -2.39 -0.02 0.07 16 29 H 0.07 2.42 5.99 -2.39 -0.01 2.41 16 30 H 0.01 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.07 2.18 7.34 -2.39 -0.02 2.16 16 32 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 33 H 0.07 1.44 8.06 -2.39 -0.02 1.42 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -59.03 300.43 2.66 -56.36 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.01 Total: 9.14 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.03 Total: -24.19 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -3.14 Total: -78.57 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -6.96 SS G_CDS: -1.26 Total: -8.22 kcal Total: -59.03 2.66 -56.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718290708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.977 kcal (2) G-P(sol) polarization free energy of solvation -59.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds