Wall clock time and date at job start Mon Mar 30 2020 21:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21290 * 119.99696 * 2 1 4 4 N 1.34773 * 119.99842 * 180.02562 * 2 1 3 5 5 C 1.46538 * 124.98124 * 359.97377 * 4 2 1 6 6 C 1.53744 * 105.20365 * 180.02562 * 5 4 2 7 7 C 1.51210 * 104.58650 * 0.02562 * 6 5 4 8 8 C 1.38603 * 108.55519 * 0.02562 * 7 6 5 9 9 C 1.39588 * 119.04969 * 180.02562 * 8 7 6 10 10 C 1.37880 * 120.28231 * 0.02562 * 9 8 7 11 11 C 1.38257 * 120.22099 * 359.67759 * 10 9 8 12 12 C 1.38144 * 130.98206 * 180.02562 * 7 6 5 13 13 C 1.50706 * 119.91891 * 359.97438 * 12 7 6 14 14 C 1.50701 * 109.47103 * 85.00024 * 13 12 7 15 15 H 1.08005 * 119.99694 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00052 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00110 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00229 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47207 * 59.99059 * 18 16 14 20 20 H 1.48496 * 109.47197 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46829 * 299.99728 * 18 16 14 22 22 H 1.09003 * 109.46977 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47702 * 299.99835 * 1 2 3 24 24 H 1.09007 * 109.47236 * 60.00230 * 1 2 3 25 25 H 1.08994 * 110.29630 * 298.95407 * 5 4 2 26 26 H 1.08998 * 110.29367 * 60.99713 * 5 4 2 27 27 H 1.08999 * 110.41214 * 241.22474 * 6 5 4 28 28 H 1.09000 * 110.41038 * 118.77813 * 6 5 4 29 29 H 1.08000 * 119.85933 * 179.97438 * 9 8 7 30 30 H 1.08003 * 119.89295 * 179.97438 * 10 9 8 31 31 H 1.08002 * 120.08617 * 180.32525 * 11 10 9 32 32 H 1.08999 * 109.46712 * 204.99361 * 13 12 7 33 33 H 1.08999 * 109.46969 * 324.99662 * 13 12 7 34 34 H 0.97000 * 119.99969 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5611 -2.4950 -0.0006 6 6 2.7350 -3.4879 -0.0006 7 6 3.9707 -2.6165 0.0001 8 6 3.5739 -1.2885 0.0011 9 6 4.5491 -0.2897 0.0013 10 6 5.8868 -0.6241 0.0000 11 6 6.2722 -1.9518 0.0053 12 6 5.3121 -2.9467 -0.0001 13 6 5.7298 -4.3947 -0.0005 14 6 5.7500 -4.9113 -1.4161 15 1 5.4862 -4.2565 -2.2336 16 6 6.1040 -6.2198 -1.6675 17 7 6.4247 -7.0171 -0.6720 18 14 6.1297 -6.8599 -3.4222 19 1 7.0951 -6.0665 -4.2245 20 1 6.5412 -8.2868 -3.4227 21 1 4.7736 -6.7351 -4.0145 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 0.9531 -2.6285 0.8941 26 1 0.9517 -2.6278 -0.8945 27 1 2.7077 -4.1088 -0.8960 28 1 2.7076 -4.1089 0.8948 29 1 4.2546 0.7493 0.0016 30 1 6.6360 0.1538 -0.0002 31 1 7.3206 -2.2112 0.0096 32 1 6.7255 -4.4857 0.4336 33 1 5.0217 -4.9773 0.5888 34 1 6.6741 -7.9377 -0.8489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259688564.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:48:52 Heat of formation + Delta-G solvation = -15.435563 kcal Electronic energy + Delta-G solvation = -17303.372072 eV Core-core repulsion = 14586.615684 eV Total energy + Delta-G solvation = -2716.756388 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.79617 -38.42848 -36.13432 -33.50475 -31.97176 -31.09607 -29.42751 -28.41092 -26.73147 -23.39878 -23.16107 -21.70833 -20.64027 -18.67818 -16.72587 -16.37050 -16.12144 -16.07938 -15.09516 -14.57032 -14.42287 -14.28753 -13.82064 -12.74528 -12.61193 -12.55503 -12.46211 -12.21081 -11.98932 -11.77399 -11.53813 -11.34697 -11.07458 -10.93367 -10.60099 -10.40577 -9.92202 -9.83493 -9.42569 -9.37683 -8.44619 -7.79562 -7.33126 -6.06804 -4.10533 1.76708 2.10192 2.78658 2.95640 3.29281 3.34113 3.37393 4.34910 4.42578 4.50630 4.80654 4.96849 5.15906 5.18250 5.27118 5.28651 5.44230 5.59346 5.68698 5.73627 5.89971 6.05402 6.17320 6.21527 6.39699 6.67759 6.85080 6.93372 7.06027 7.18327 7.48113 7.60632 7.69701 7.81395 7.89142 8.11886 8.29581 8.94443 9.53254 11.02960 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.029216 B = 0.006296 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.156292 B = 4445.907131 C = 4926.826679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.516 3.484 3 O -0.534 6.534 4 N -0.551 5.551 5 C 0.100 3.900 6 C -0.081 4.081 7 C -0.129 4.129 8 C 0.127 3.873 9 C -0.154 4.154 10 C -0.101 4.101 11 C -0.142 4.142 12 C 0.000 4.000 13 C 0.050 3.950 14 C -0.510 4.510 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 8.540 2.211 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.306 3.694 3 O -0.411 6.411 4 N -0.275 5.275 5 C -0.022 4.022 6 C -0.118 4.118 7 C -0.131 4.131 8 C 0.033 3.967 9 C -0.175 4.175 10 C -0.120 4.120 11 C -0.160 4.160 12 C -0.001 4.001 13 C 0.013 3.987 14 C -0.548 4.548 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.098 0.902 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.338 8.998 2.252 13.889 hybrid contribution -0.005 -0.487 -1.012 1.123 sum -10.343 8.511 1.241 13.452 Atomic orbital electron populations 1.21878 0.90991 1.04626 1.05296 1.20731 0.90642 0.82135 0.75868 1.90678 1.70607 1.30751 1.49043 1.45975 1.05174 1.07074 1.69305 1.22224 0.97013 0.80739 1.02182 1.20996 0.89608 0.96595 1.04587 1.19752 0.94467 0.91897 1.07019 1.18346 0.82438 0.94836 1.01040 1.20646 0.91486 0.98485 1.06843 1.20823 0.94747 0.96365 1.00061 1.21013 0.99505 0.91934 1.03587 1.19995 0.90071 0.98699 0.91338 1.18324 0.97295 0.85288 0.97746 1.20975 1.46192 0.95775 0.91833 0.92598 1.24982 0.95239 0.96858 0.97071 1.69943 1.45975 1.06496 1.30861 0.86630 0.78570 0.77779 0.84901 1.20173 1.21233 1.20232 0.90199 0.88577 0.88561 0.90324 0.90205 0.88405 0.89413 0.85502 0.86451 0.86012 0.95290 0.95201 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.20 36.01 0.37 -1.15 16 2 C 0.52 7.63 7.90 -10.99 -0.09 7.55 16 3 O -0.53 -9.83 15.27 5.55 0.08 -9.75 16 4 N -0.55 -8.68 3.13 -112.90 -0.35 -9.03 16 5 C 0.10 1.25 5.98 -3.63 -0.02 1.23 16 6 C -0.08 -1.30 6.43 -27.25 -0.18 -1.48 16 7 C -0.13 -2.54 6.07 -104.27 -0.63 -3.18 16 8 C 0.13 2.40 6.62 -83.57 -0.55 1.85 16 9 C -0.15 -2.92 9.46 -39.21 -0.37 -3.29 16 10 C -0.10 -1.83 10.02 -39.71 -0.40 -2.23 16 11 C -0.14 -2.82 9.69 -39.57 -0.38 -3.21 16 12 C 0.00 -0.01 5.07 -104.64 -0.53 -0.54 16 13 C 0.05 1.26 4.93 -29.03 -0.14 1.11 16 14 C -0.51 -13.83 9.09 -34.44 -0.31 -14.14 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H 0.08 0.55 6.55 -51.93 -0.34 0.21 16 23 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 26 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 27 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.13 2.41 6.28 -52.49 -0.33 2.08 16 30 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.03 0.76 8.05 -51.93 -0.42 0.35 16 33 H 0.03 0.77 7.86 -51.93 -0.41 0.36 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 289.04 15.07 4.36 4.36 Total: -1.00 -31.97 289.04 -7.95 -39.92 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.41 Total: -0.67 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -3.34 Total: -15.93 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.38 Total: -33.98 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.97 -7.95 -39.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259688564.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.482 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds