Wall clock time and date at job start Mon Mar 30 2020 21:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.35729 * 125.99389 * 2 1 4 4 H 0.97006 * 125.93505 * 359.97438 * 3 2 1 5 5 N 1.40077 * 108.13130 * 179.97438 * 3 2 1 6 6 C 1.32109 * 108.05788 * 0.02562 * 5 3 2 7 7 C 1.47324 * 126.04287 * 179.97438 * 6 5 3 8 8 C 1.38698 * 125.77761 * 237.41652 * 7 6 5 9 9 C 1.38509 * 107.88356 * 180.02562 * 8 7 6 10 10 C 1.40038 * 107.50002 * 359.97438 * 9 8 7 11 11 C 1.39632 * 126.10538 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99909 * 179.97438 * 11 10 9 13 13 C 1.40066 * 120.00046 * 359.97438 * 11 10 9 14 14 N 1.30853 * 120.00270 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99891 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47396 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47252 * 119.99665 * 15 13 11 18 18 H 1.48500 * 109.47072 * 239.99459 * 15 13 11 19 19 N 1.37214 * 125.77415 * 57.11549 * 7 6 5 20 20 C 1.46498 * 125.81323 * 359.97438 * 19 7 6 21 21 C 1.34912 * 125.99163 * 179.69142 * 2 1 3 22 22 C 1.50697 * 126.05483 * 0.02562 * 21 2 1 23 23 H 1.09000 * 109.47198 * 90.02388 * 1 2 3 24 24 H 1.09003 * 109.47120 * 330.02205 * 1 2 3 25 25 H 1.09003 * 109.47130 * 210.02367 * 1 2 3 26 26 H 1.07999 * 126.05786 * 0.02562 * 8 7 6 27 27 H 1.08004 * 126.24760 * 179.97438 * 9 8 7 28 28 H 0.97002 * 120.00265 * 180.02562 * 14 13 11 29 29 H 1.08994 * 109.47174 * 94.98677 * 20 19 7 30 30 H 1.08995 * 109.47057 * 214.98986 * 20 19 7 31 31 H 1.09005 * 109.46477 * 334.98699 * 20 19 7 32 32 H 1.09003 * 109.47523 * 94.73437 * 22 21 2 33 33 H 1.08999 * 109.47092 * 214.73583 * 22 21 2 34 34 H 1.09003 * 109.47469 * 334.73678 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3046 1.0982 0.0000 4 1 2.0037 2.0204 -0.0004 5 7 3.6379 0.6685 0.0006 6 6 3.6424 -0.6526 0.0004 7 6 4.8366 -1.5154 0.0003 8 6 5.1390 -2.4813 -0.9480 9 6 6.3413 -3.0679 -0.5891 10 6 6.7752 -2.4510 0.5908 11 6 7.9470 -2.7459 1.2906 12 1 8.1866 -2.2056 2.1946 13 6 8.8117 -3.7423 0.8203 14 7 8.5213 -4.3973 -0.2746 15 14 10.3797 -4.1362 1.7561 16 1 10.4759 -3.2605 2.9516 17 1 10.3568 -5.5581 2.1841 18 1 11.5531 -3.9029 0.8764 19 7 5.8407 -1.4953 0.9352 20 6 5.9078 -0.6124 2.1024 21 6 2.2998 -1.0916 0.0059 22 6 1.8353 -2.5251 0.0131 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 0.8902 0.5135 25 1 -0.3633 -0.8898 0.5142 26 1 4.5427 -2.7317 -1.8129 27 1 6.8511 -3.8570 -1.1220 28 1 9.1199 -5.0876 -0.6002 29 1 5.4984 -1.1273 2.9714 30 1 6.9463 -0.3435 2.2952 31 1 5.3285 0.2904 1.9086 32 1 1.8043 -2.9022 -1.0092 33 1 2.5265 -3.1281 0.6020 34 1 0.8390 -2.5821 0.4516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259698708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:49:13 Heat of formation + Delta-G solvation = 102.055097 kcal Electronic energy + Delta-G solvation = -17247.994606 eV Core-core repulsion = 14568.625746 eV Total energy + Delta-G solvation = -2679.368860 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62772 -38.77986 -33.56914 -32.53209 -32.04509 -31.09060 -28.46796 -27.65419 -25.20100 -24.99315 -24.64300 -20.87526 -19.25132 -18.82912 -17.65817 -16.81966 -16.58751 -15.27892 -14.68362 -14.33302 -13.83899 -13.55250 -13.19594 -12.77682 -12.49234 -12.27291 -12.21337 -12.00832 -11.76926 -11.47089 -11.38921 -11.34213 -11.00548 -10.88117 -10.44138 -10.15160 -10.00001 -9.53532 -9.26011 -8.75343 -7.89880 -7.00285 -6.58497 -6.46107 -4.06318 2.23342 2.92864 3.12784 3.15109 3.19101 3.30072 3.86964 4.01622 4.56758 4.68921 4.95995 5.16844 5.39170 5.45545 5.52111 5.70518 5.80647 5.92629 6.07274 6.20236 6.22804 6.34259 6.39922 6.51311 6.73172 6.94503 7.16048 7.22574 7.40907 7.72414 7.84415 8.01834 8.21138 8.33664 8.45826 8.93520 9.06691 9.26744 9.44270 10.41444 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.046397 B = 0.005561 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.340124 B = 5033.541428 C = 5341.158619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.063 3.937 3 N -0.495 5.495 4 H 0.429 0.571 5 N -0.308 5.308 6 C 0.196 3.804 7 C -0.068 4.068 8 C -0.128 4.128 9 C -0.283 4.283 10 C 0.228 3.772 11 C -0.448 4.448 12 H 0.070 0.930 13 C 0.074 3.926 14 N -0.797 5.797 15 Si 0.920 3.080 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.275 1.275 19 N -0.470 5.470 20 C 0.097 3.903 21 C -0.220 4.220 22 C -0.067 4.067 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.159 0.841 28 H 0.274 0.726 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.928 4.751 1.715 12.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 N -0.204 5.204 4 H 0.272 0.728 5 N -0.131 5.131 6 C 0.031 3.969 7 C -0.174 4.174 8 C -0.156 4.156 9 C -0.305 4.305 10 C 0.117 3.883 11 C -0.484 4.484 12 H 0.088 0.912 13 C -0.143 4.143 14 N -0.425 5.425 15 Si 0.745 3.255 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.200 1.200 19 N -0.155 5.155 20 C -0.046 4.046 21 C -0.231 4.231 22 C -0.124 4.124 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.176 0.824 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.203 5.884 1.827 11.919 hybrid contribution 0.034 -0.146 0.416 0.442 sum -10.169 5.737 2.243 11.889 Atomic orbital electron populations 1.20371 0.88026 1.03230 1.02796 1.20747 0.93808 0.87722 1.04030 1.46253 1.04442 1.07323 1.62379 0.72844 1.77855 0.94850 1.13000 1.27364 1.19958 0.92091 0.89106 0.95716 1.17093 0.92970 1.07435 0.99900 1.20675 0.98907 0.98215 0.97778 1.21755 0.98595 1.09120 1.01040 1.18178 0.88320 0.87712 0.94080 1.18450 1.02856 1.17776 1.09295 0.91220 1.25634 0.99200 0.94755 0.94674 1.69760 1.35301 1.18640 1.18749 0.86076 0.80737 0.78764 0.79905 1.18894 1.20007 1.20039 1.43815 1.19239 1.31675 1.20779 1.21461 1.01958 0.93462 0.87749 1.19999 0.91953 0.95773 1.15401 1.20008 0.99638 0.91238 1.01561 0.90698 0.91748 0.89909 0.87893 0.82407 0.91443 0.93713 0.91487 0.91812 0.92346 0.91285 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.20 36.00 0.37 -0.46 16 2 C 0.06 0.95 7.20 -82.05 -0.59 0.36 16 3 N -0.50 -7.80 7.38 33.54 0.25 -7.56 16 4 H 0.43 5.04 8.96 -182.61 -1.64 3.41 16 5 N -0.31 -6.39 12.17 33.33 0.41 -5.98 16 6 C 0.20 4.30 6.42 -82.91 -0.53 3.77 16 7 C -0.07 -1.70 6.58 -81.59 -0.54 -2.24 16 8 C -0.13 -3.27 10.79 -39.31 -0.42 -3.70 16 9 C -0.28 -7.88 9.74 -38.81 -0.38 -8.26 16 10 C 0.23 6.37 6.67 -83.88 -0.56 5.81 16 11 C -0.45 -12.16 8.97 -38.38 -0.34 -12.50 16 12 H 0.07 1.80 7.24 -52.49 -0.38 1.42 16 13 C 0.07 1.90 5.50 -17.28 -0.10 1.80 16 14 N -0.80 -21.02 10.22 55.56 0.57 -20.45 16 15 Si 0.92 19.16 29.56 -169.99 -5.03 14.14 16 16 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 N -0.47 -12.00 3.22 -117.03 -0.38 -12.38 16 20 C 0.10 2.08 10.66 59.85 0.64 2.72 16 21 C -0.22 -4.02 6.13 -104.66 -0.64 -4.66 16 22 C -0.07 -1.06 9.98 36.00 0.36 -0.70 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.74 7.04 -51.93 -0.37 0.37 16 26 H 0.10 2.40 8.06 -52.49 -0.42 1.98 16 27 H 0.16 4.54 5.65 -52.48 -0.30 4.24 16 28 H 0.27 6.56 8.30 -40.82 -0.34 6.22 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.37 7.55 -51.93 -0.39 0.97 16 31 H 0.06 1.31 7.14 -51.93 -0.37 0.94 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 34 H 0.05 0.64 6.99 -51.93 -0.36 0.28 16 LS Contribution 290.31 15.07 4.37 4.37 Total: -1.00 -31.54 290.31 -8.02 -39.56 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.47 Total: 6.37 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -2.74 Total: -18.06 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.84 Total: -46.37 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.54 -8.02 -39.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.612 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds