Wall clock time and date at job start Mon Mar 30 2020 21:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29910 * 124.85503 * 2 1 4 4 C 1.36060 * 108.79787 * 180.02562 * 3 2 1 5 5 C 1.39593 * 133.80293 * 179.35930 * 4 3 2 6 6 C 1.37675 * 119.72821 * 180.02562 * 5 4 3 7 7 C 1.38729 * 120.42434 * 359.97438 * 6 5 4 8 8 C 1.37905 * 120.47177 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.06093 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47406 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47064 * 299.99893 * 9 8 7 12 12 H 1.07998 * 119.99501 * 359.97438 * 11 9 8 13 13 C 1.37871 * 120.00436 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00481 * 179.97438 * 13 11 9 15 15 Si 1.86803 * 119.99886 * 359.72901 * 13 11 9 16 16 H 1.48502 * 109.46964 * 270.27509 * 15 13 11 17 17 H 1.48505 * 109.47036 * 30.26897 * 15 13 11 18 18 H 1.48490 * 109.47395 * 150.27411 * 15 13 11 19 19 C 1.53000 * 109.47209 * 59.99553 * 9 8 7 20 20 N 1.46902 * 109.47071 * 65.00656 * 19 9 8 21 21 C 1.38666 * 119.87845 * 0.27506 * 8 7 6 22 22 O 1.34233 * 124.85545 * 179.38185 * 2 1 3 23 23 H 1.09004 * 109.47534 * 270.61009 * 1 2 3 24 24 H 1.08997 * 109.47230 * 30.61158 * 1 2 3 25 25 H 1.09004 * 109.47116 * 150.61643 * 1 2 3 26 26 H 1.07999 * 120.13393 * 359.97438 * 5 4 3 27 27 H 1.07999 * 119.78775 * 180.02562 * 6 5 4 28 28 H 1.07993 * 119.76040 * 180.02562 * 7 6 5 29 29 H 0.96999 * 120.00235 * 179.72806 * 14 13 11 30 30 H 1.09009 * 109.46739 * 185.00104 * 19 9 8 31 31 H 1.08993 * 109.47308 * 304.99915 * 19 9 8 32 32 H 1.00903 * 111.00261 * 56.03841 * 20 19 9 33 33 H 1.00895 * 111.00120 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2494 1.0660 0.0000 4 6 3.5569 0.6897 -0.0006 5 6 4.7641 1.3906 -0.0121 6 6 5.9548 0.6995 -0.0095 7 6 5.9619 -0.6877 0.0050 8 6 4.7770 -1.3931 0.0176 9 6 4.7955 -2.8999 0.0339 10 1 3.7724 -3.2758 0.0417 11 6 5.5070 -3.4068 -1.1941 12 1 5.9054 -2.7077 -1.9145 13 6 5.6492 -4.7629 -1.3980 14 7 6.2696 -5.2053 -2.4699 15 14 4.9667 -5.9719 -0.1482 16 1 6.0022 -6.2629 0.8756 17 1 3.7724 -5.3830 0.5092 18 1 4.5829 -7.2309 -0.8358 19 6 5.5282 -3.3874 1.2854 20 7 4.7698 -2.9952 2.4808 21 6 3.5684 -0.7133 0.0099 22 8 2.2741 -1.1014 0.0119 23 1 -0.3634 0.0109 1.0276 24 1 -0.3633 0.8844 -0.5233 25 1 -0.3633 -0.8955 -0.5042 26 1 4.7640 2.4705 -0.0239 27 1 6.8894 1.2407 -0.0180 28 1 6.9022 -1.2190 0.0073 29 1 6.3731 -6.1594 -2.6113 30 1 5.6196 -4.4732 1.2531 31 1 6.5215 -2.9402 1.3223 32 1 3.8239 -3.3441 2.4395 33 1 5.2332 -3.3063 3.3213 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:47:41 Heat of formation + Delta-G solvation = 36.049891 kcal Electronic energy + Delta-G solvation = -17779.636297 eV Core-core repulsion = 14999.686574 eV Total energy + Delta-G solvation = -2779.949722 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.69942 -37.94784 -35.61962 -34.06369 -32.44599 -31.30499 -30.85803 -27.93262 -27.55128 -23.68906 -22.60765 -22.47122 -21.21721 -19.50725 -17.62277 -16.86153 -16.40994 -16.23760 -15.28494 -15.13061 -14.69091 -13.79320 -13.43957 -13.31522 -13.17525 -13.02571 -12.78398 -12.56451 -12.02842 -11.86071 -11.60862 -11.28051 -11.12636 -10.73859 -10.47622 -10.21291 -10.01860 -9.68128 -9.39486 -8.74682 -8.10016 -8.04106 -7.63004 -6.21302 -4.22654 1.27754 1.87048 2.92442 3.01280 3.12390 3.22984 3.26676 4.16052 4.24987 4.28437 5.02540 5.06225 5.26051 5.29652 5.34073 5.36400 5.59509 5.74872 5.75618 5.83030 5.99365 6.15183 6.24961 6.41466 6.57026 6.62298 6.81655 6.90274 6.98318 7.24852 7.40814 7.45813 7.71125 7.92504 8.08052 8.36618 8.83365 9.37973 10.90900 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.008373 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.401804 B = 3343.407670 C = 3729.448847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.227 3.773 3 N -0.487 5.487 4 C 0.015 3.985 5 C -0.094 4.094 6 C -0.114 4.114 7 C -0.093 4.093 8 C 0.022 3.978 9 C 0.048 3.952 10 H 0.035 0.965 11 C -0.512 4.512 12 H 0.081 0.919 13 C 0.074 3.926 14 N -0.892 5.892 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.269 1.269 18 H -0.294 1.294 19 C 0.060 3.940 20 N -0.852 5.852 21 C 0.016 3.984 22 O -0.210 6.210 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.266 0.734 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.332 0.668 33 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 7.666 7.272 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.016 3.984 3 N -0.219 5.219 4 C -0.096 4.096 5 C -0.113 4.113 6 C -0.134 4.134 7 C -0.111 4.111 8 C 0.021 3.979 9 C 0.029 3.971 10 H 0.053 0.947 11 C -0.550 4.550 12 H 0.099 0.901 13 C -0.129 4.129 14 N -0.529 5.529 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.195 1.195 18 H -0.222 1.222 19 C -0.070 4.070 20 N -0.380 5.380 21 C -0.033 4.033 22 O -0.101 6.101 23 H 0.111 0.889 24 H 0.118 0.882 25 H 0.108 0.892 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.143 0.857 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.521 8.847 6.906 12.980 hybrid contribution -0.101 -2.540 0.748 2.649 sum -6.622 6.308 7.654 11.925 Atomic orbital electron populations 1.20290 0.81690 1.05086 1.04581 1.26243 0.96445 0.79000 0.96710 1.70502 1.01327 1.29157 1.20935 1.19744 0.91767 0.91522 1.06606 1.20002 0.88872 0.99191 1.03285 1.20958 0.97111 0.94360 1.00926 1.20863 0.97612 0.93071 0.99538 1.18873 0.87022 0.96946 0.95009 1.18334 0.97401 0.87435 0.93948 0.94650 1.20927 1.36688 0.92671 1.04753 0.90066 1.25001 0.94490 0.98167 0.95237 1.69869 1.41749 1.14594 1.26667 0.86843 0.79612 0.80596 0.81122 1.20668 1.19466 1.22159 1.22427 0.98046 0.96670 0.89823 1.58921 1.06216 1.68189 1.04634 1.20180 0.83312 0.93745 1.06085 1.84461 1.15848 1.35547 1.74206 0.88917 0.88221 0.89183 0.85850 0.85440 0.84407 0.92379 0.96335 0.90805 0.85674 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 36.00 0.38 -0.23 16 2 C 0.23 3.84 8.24 -13.09 -0.11 3.74 16 3 N -0.49 -9.15 11.34 -8.70 -0.10 -9.25 16 4 C 0.01 0.29 7.24 -84.71 -0.61 -0.32 16 5 C -0.09 -1.65 10.10 -39.28 -0.40 -2.05 16 6 C -0.11 -1.91 10.02 -39.61 -0.40 -2.30 16 7 C -0.09 -1.80 8.64 -39.52 -0.34 -2.14 16 8 C 0.02 0.49 4.47 -104.59 -0.47 0.02 16 9 C 0.05 1.13 1.69 -92.92 -0.16 0.98 16 10 H 0.04 0.89 6.89 -51.93 -0.36 0.53 16 11 C -0.51 -13.97 8.82 -34.44 -0.30 -14.27 16 12 H 0.08 2.41 7.85 -52.49 -0.41 1.99 16 13 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 14 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 15 Si 0.89 21.32 24.40 -169.99 -4.15 17.17 16 16 H -0.28 -6.50 6.82 56.52 0.39 -6.11 16 17 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 C 0.06 1.26 5.56 -3.82 -0.02 1.24 16 20 N -0.85 -15.30 9.34 -10.37 -0.10 -15.40 16 21 C 0.02 0.35 7.06 -38.64 -0.27 0.08 16 22 O -0.21 -4.25 10.61 3.60 0.04 -4.21 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.14 2.59 7.53 -52.49 -0.40 2.19 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 30 H 0.02 0.42 3.19 -51.92 -0.17 0.25 16 31 H 0.07 1.51 7.22 -51.93 -0.37 1.13 16 32 H 0.33 5.85 8.99 -39.29 -0.35 5.50 16 33 H 0.33 4.95 9.08 -39.29 -0.36 4.60 16 LS Contribution 277.50 15.07 4.18 4.18 Total: -1.00 -32.26 277.50 -5.86 -38.12 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.71 Total: 8.36 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -2.80 Total: -13.30 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.58 Total: -50.32 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.15 Total: 17.17 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.26 -5.86 -38.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.167 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds