Wall clock time and date at job start Mon Mar 30 2020 21:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99915 * 2 1 4 4 H 1.48496 * 109.47100 * 270.00344 * 3 2 1 5 5 H 1.48502 * 109.46999 * 29.99824 * 3 2 1 6 6 H 1.48494 * 109.47081 * 149.99786 * 3 2 1 7 7 C 1.37877 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00066 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.39032 * 119.55576 * 270.02560 * 10 9 7 12 12 C 1.37475 * 120.09447 * 180.02562 * 11 10 9 13 13 C 1.39560 * 120.02730 * 359.94915 * 12 11 10 14 14 S 1.76175 * 131.41972 * 180.02562 * 13 12 11 15 15 C 1.75870 * 90.26817 * 179.97438 * 14 13 12 16 16 C 1.47080 * 124.88265 * 179.97438 * 15 14 13 17 17 O 1.21263 * 120.00195 * 0.02562 * 16 15 14 18 18 N 1.29185 * 110.23846 * 0.26076 * 15 14 13 19 19 C 1.33152 * 118.21828 * 359.50602 * 18 15 14 20 20 C 1.35867 * 119.55071 * 89.99847 * 10 9 7 21 21 H 0.97002 * 120.00429 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47474 * 59.99714 * 9 7 2 23 23 H 1.08994 * 109.46895 * 299.99756 * 9 7 2 24 24 H 1.07993 * 119.94674 * 0.02562 * 11 10 9 25 25 H 1.07997 * 119.98456 * 179.97438 * 12 11 10 26 26 H 1.08005 * 120.00013 * 179.74680 * 16 15 14 27 27 H 1.08006 * 119.74665 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6764 -4.1655 -1.2089 12 6 3.5694 -5.2107 -1.2218 13 6 4.0305 -5.7502 -0.0201 14 16 5.1549 -7.0653 0.3116 15 6 4.9455 -6.8192 2.0404 16 6 5.6157 -7.6033 3.0889 17 8 6.3783 -8.4957 2.7846 18 7 4.1139 -5.8547 2.2570 19 6 3.5867 -5.2300 1.2060 20 6 2.6658 -4.1539 1.1825 21 1 -0.4851 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.3209 -3.7484 -2.1394 25 1 3.9144 -5.6143 -2.1623 26 1 5.4320 -7.3814 4.1298 27 1 2.3072 -3.7350 2.1111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259765310.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:48:00 Heat of formation + Delta-G solvation = 16.334982 kcal Electronic energy + Delta-G solvation = -14300.970569 eV Core-core repulsion = 11729.367059 eV Total energy + Delta-G solvation = -2571.603511 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20956 -39.15817 -36.89318 -33.40219 -31.40059 -30.26431 -27.43469 -26.31909 -23.88479 -22.09435 -21.99152 -20.04875 -18.07212 -16.95528 -16.43036 -16.06816 -15.19433 -15.16924 -14.95305 -14.54035 -13.89302 -13.82415 -13.42041 -12.52593 -12.16441 -11.74828 -11.39002 -11.27551 -10.97026 -10.75286 -10.65356 -10.49527 -10.02321 -9.74681 -9.64045 -9.42063 -8.53920 -8.31510 -7.76715 -6.16105 -4.21076 -0.02058 1.24323 1.55067 1.74188 1.74848 2.81200 3.23948 3.31041 3.34841 3.55913 4.04287 4.36975 4.55066 4.86221 5.12510 5.19431 5.33634 5.50607 5.75333 5.97122 6.19038 6.31533 6.59282 6.81295 6.83702 7.11859 7.37758 7.54290 7.64490 7.78888 8.14804 8.83710 9.43961 10.93633 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.040422 B = 0.004935 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.529337 B = 5672.889665 C = 5914.180404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.048 3.952 10 C -0.031 4.031 11 C -0.064 4.064 12 C -0.096 4.096 13 C -0.168 4.168 14 S 0.089 5.911 15 C -0.017 4.017 16 C 0.431 3.569 17 O -0.446 6.446 18 N -0.398 5.398 19 C 0.064 3.936 20 C -0.056 4.056 21 H 0.264 0.736 22 H 0.035 0.965 23 H 0.034 0.966 24 H 0.138 0.862 25 H 0.127 0.873 26 H 0.138 0.862 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.090 -11.689 1.368 13.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.011 3.989 10 C -0.034 4.034 11 C -0.086 4.086 12 C -0.119 4.119 13 C -0.287 4.287 14 S 0.343 5.657 15 C -0.297 4.297 16 C 0.283 3.717 17 O -0.314 6.314 18 N -0.117 5.117 19 C -0.058 4.058 20 C -0.078 4.078 21 H 0.073 0.927 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.156 0.844 25 H 0.145 0.855 26 H 0.155 0.845 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.919 -12.736 1.219 15.046 hybrid contribution -0.220 1.807 -0.051 1.821 sum 7.699 -10.929 1.167 13.420 Atomic orbital electron populations 1.69943 1.06045 1.27087 1.49882 1.24996 0.94893 0.99335 0.94891 0.86515 0.79864 0.82988 0.78255 1.20509 1.21058 1.19752 1.21018 0.93077 0.89687 1.51854 0.92347 1.18429 0.92293 0.89052 0.99083 1.20350 0.96445 0.95433 0.91128 1.21388 0.94467 0.93443 0.99256 1.20316 0.99009 0.97784 0.94806 1.23977 1.03834 1.01731 0.99128 1.84827 1.44140 1.32892 1.03802 1.28128 1.03319 1.01200 0.97026 1.23490 0.76234 0.78737 0.93189 1.90583 1.28324 1.26153 1.86290 1.65798 1.06353 1.05068 1.34476 1.19068 1.01622 0.99823 0.85254 1.20528 0.94770 0.92725 0.99767 0.92651 0.94692 0.94729 0.84401 0.85488 0.84548 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.36 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 7 C -0.52 -13.62 9.09 -34.44 -0.31 -13.94 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.05 1.14 5.07 -29.04 -0.15 0.99 15 10 C -0.03 -0.61 5.02 -105.18 -0.53 -1.14 15 11 C -0.06 -1.09 9.68 -39.57 -0.38 -1.47 15 12 C -0.10 -1.48 10.07 -39.37 -0.40 -1.87 15 13 C -0.17 -2.75 6.56 -38.28 -0.25 -3.00 15 14 S 0.09 1.27 23.16 -107.50 -2.49 -1.22 15 15 C -0.02 -0.24 7.41 -15.08 -0.11 -0.35 15 16 C 0.43 4.69 11.78 34.32 0.40 5.10 15 17 O -0.45 -5.90 17.72 5.57 0.10 -5.81 15 18 N -0.40 -6.48 10.53 -8.71 -0.09 -6.57 15 19 C 0.06 1.14 6.94 -85.18 -0.59 0.55 15 20 C -0.06 -1.07 9.66 -39.13 -0.38 -1.44 15 21 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 22 H 0.03 0.85 8.08 -51.93 -0.42 0.43 15 23 H 0.03 0.86 8.07 -51.93 -0.42 0.44 15 24 H 0.14 2.14 8.06 -52.49 -0.42 1.72 15 25 H 0.13 1.57 8.06 -52.49 -0.42 1.15 15 26 H 0.14 0.93 8.06 -52.48 -0.42 0.51 15 27 H 0.14 2.54 8.06 -52.48 -0.42 2.11 15 LS Contribution 266.72 15.07 4.02 4.02 Total: -1.00 -29.43 266.72 -7.61 -37.04 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -2.07 Total: -3.77 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.79 Total: -15.02 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.64 Total: -30.93 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: 0.10 Total: -5.81 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.49 Total: -1.22 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.43 -7.61 -37.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765310.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.379 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds