Wall clock time and date at job start Mon Mar 30 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38611 * 120.71773 * 2 1 4 4 N 1.32278 * 119.19445 * 179.97438 * 3 2 1 5 5 C 1.32490 * 120.74316 * 359.97438 * 4 3 2 6 6 N 1.38402 * 119.21768 * 179.97438 * 5 4 3 7 7 C 1.46498 * 120.00092 * 180.02562 * 6 5 4 8 8 H 1.08995 * 110.05547 * 34.96736 * 7 6 5 9 9 C 1.53876 * 110.03560 * 273.54980 * 7 6 5 10 10 C 1.54261 * 106.59990 * 240.71634 * 9 7 6 11 11 C 1.54888 * 104.19672 * 23.60631 * 10 9 7 12 12 H 1.09001 * 110.75591 * 80.55981 * 11 10 9 13 13 C 1.50700 * 110.75900 * 203.74240 * 11 10 9 14 14 H 1.08000 * 119.99960 * 118.54346 * 13 11 10 15 15 C 1.37879 * 120.00147 * 298.54740 * 13 11 10 16 16 N 1.31519 * 119.99847 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00119 * 179.97438 * 15 13 11 18 18 H 1.48511 * 109.46810 * 90.00328 * 17 15 13 19 19 H 1.48500 * 109.47187 * 210.00317 * 17 15 13 20 20 H 1.48493 * 109.47136 * 330.00542 * 17 15 13 21 21 C 1.54267 * 110.03218 * 156.38110 * 7 6 5 22 22 N 1.32492 * 121.56520 * 0.28159 * 5 4 3 23 23 C 1.32285 * 120.74210 * 359.43835 * 22 5 4 24 24 H 1.08996 * 109.46963 * 90.00699 * 1 2 3 25 25 H 1.09001 * 109.47090 * 210.00463 * 1 2 3 26 26 H 1.08992 * 109.47288 * 330.00441 * 1 2 3 27 27 H 1.07998 * 120.39790 * 359.97438 * 3 2 1 28 28 H 0.97004 * 119.99949 * 0.02562 * 6 5 4 29 29 H 1.08998 * 110.02768 * 0.02562 * 9 7 6 30 30 H 1.08994 * 110.03051 * 121.42911 * 9 7 6 31 31 H 1.09000 * 110.48928 * 142.28640 * 10 9 7 32 32 H 1.08999 * 110.48469 * 264.93049 * 10 9 7 33 33 H 0.97002 * 119.99821 * 179.97438 * 16 15 13 34 34 H 1.09004 * 110.48597 * 214.35526 * 21 7 6 35 35 H 1.08994 * 110.48679 * 337.00052 * 21 7 6 36 36 H 1.07991 * 120.40230 * 180.24979 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1916 0.0000 4 7 3.5374 1.1565 0.0005 5 6 4.1841 0.0002 0.0015 6 7 5.5681 0.0002 0.0015 7 6 6.3007 -1.2685 0.0021 8 1 5.7610 -2.0120 -0.5844 9 6 6.4868 -1.7691 1.4452 10 6 8.0076 -1.8497 1.6910 11 6 8.6110 -0.8558 0.6677 12 1 8.5377 0.1681 1.0343 13 6 10.0433 -1.2094 0.3603 14 1 10.3305 -1.4716 -0.6473 15 6 10.9871 -1.1984 1.3653 16 7 10.6373 -0.8796 2.5924 17 14 12.7623 -1.6374 0.9844 18 1 13.5071 -0.4080 0.6111 19 1 13.3887 -2.2508 2.1830 20 1 12.8025 -2.6022 -0.1436 21 6 7.7149 -1.0623 -0.5787 22 7 3.5375 -1.1562 -0.0035 23 6 2.2151 -1.1915 0.0015 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8899 0.5137 27 1 1.6934 2.1373 -0.0004 28 1 6.0531 0.8403 0.0011 29 1 6.0317 -1.0683 2.1450 30 1 6.0374 -2.7555 1.5590 31 1 8.2464 -1.5413 2.7088 32 1 8.3716 -2.8596 1.5021 33 1 11.3012 -0.8722 3.2996 34 1 8.0316 -1.9451 -1.1342 35 1 7.7401 -0.1793 -1.2172 36 1 1.6936 -2.1372 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393941663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:49:55 Heat of formation + Delta-G solvation = 36.855497 kcal Electronic energy + Delta-G solvation = -17430.050012 eV Core-core repulsion = 14720.542406 eV Total energy + Delta-G solvation = -2709.507605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78942 -37.84351 -34.76590 -33.47134 -32.71903 -31.51400 -28.17390 -27.51103 -25.84451 -24.61615 -23.68218 -22.09273 -19.46191 -19.25824 -18.06591 -17.21413 -16.32465 -15.04171 -14.82053 -14.79815 -14.56441 -14.19148 -13.64024 -13.37902 -13.20423 -12.97702 -12.48274 -12.38228 -11.66485 -11.34180 -10.99080 -10.89846 -10.73550 -10.67611 -10.51454 -10.27551 -10.06437 -9.65525 -9.50971 -9.15473 -8.87753 -8.78184 -8.36266 -7.65330 -5.99537 -4.02999 1.32531 1.33384 3.23306 3.31255 3.38235 3.41202 4.05902 4.37238 4.44927 4.71006 4.93434 4.95391 5.05450 5.32660 5.47239 5.52836 5.61838 5.71287 5.76473 5.88362 6.00838 6.26316 6.39612 6.60618 6.61090 6.72646 6.76914 6.93119 7.04987 7.26317 7.31700 7.48262 7.72905 7.81295 7.89758 8.03778 8.44668 8.59057 8.99259 9.61295 11.09460 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.065654 B = 0.004180 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.375104 B = 6697.136102 C = 6752.417684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.279 4.279 3 C 0.193 3.807 4 N -0.576 5.576 5 C 0.564 3.436 6 N -0.679 5.679 7 C 0.154 3.846 8 H 0.079 0.921 9 C -0.133 4.133 10 C -0.101 4.101 11 C 0.050 3.950 12 H 0.029 0.971 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.126 4.126 22 N -0.563 5.563 23 C 0.193 3.807 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.160 0.840 28 H 0.413 0.587 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.259 0.741 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.654 0.919 -4.297 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.288 4.288 3 C 0.024 3.976 4 N -0.298 5.298 5 C 0.208 3.792 6 N -0.313 5.313 7 C 0.049 3.951 8 H 0.097 0.903 9 C -0.172 4.172 10 C -0.139 4.139 11 C 0.032 3.968 12 H 0.047 0.953 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.164 4.164 22 N -0.285 5.285 23 C 0.024 3.976 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.177 0.823 28 H 0.250 0.750 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.369 0.741 -4.123 16.897 hybrid contribution 0.230 0.111 -0.020 0.256 sum -16.139 0.852 -4.143 16.684 Atomic orbital electron populations 1.20406 0.89936 1.02491 1.01788 1.21197 0.98434 0.95556 1.13566 1.22743 0.88455 0.97839 0.88550 1.67939 1.10363 1.28795 1.22695 1.19475 0.87655 0.84451 0.87661 1.44726 0.99718 1.10552 1.76286 1.21821 0.92490 0.83358 0.97383 0.90318 1.22682 0.99805 0.99518 0.95190 1.22308 0.89692 1.00070 1.01862 1.19593 0.92924 0.95175 0.89121 0.95328 1.21124 0.92901 1.46528 0.94785 0.92629 1.24980 0.98640 0.95162 0.95132 1.69966 1.33866 1.48497 1.00389 0.86640 0.85255 0.78584 0.77778 1.20775 1.21313 1.19934 1.22810 0.92540 1.00894 1.00135 1.67992 1.09996 1.28559 1.22000 1.22808 0.88610 0.97834 0.88342 0.91848 0.91808 0.91851 0.82266 0.74985 0.93037 0.92943 0.91358 0.93341 0.93110 0.91057 0.92848 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.06 36.01 0.36 -0.26 16 2 C -0.28 -3.04 5.91 -104.35 -0.62 -3.66 16 3 C 0.19 2.36 11.00 -17.22 -0.19 2.17 16 4 N -0.58 -9.10 10.46 -13.93 -0.15 -9.25 16 5 C 0.56 9.61 8.42 -322.82 -2.72 6.90 16 6 N -0.68 -11.90 5.09 -54.71 -0.28 -12.18 16 7 C 0.15 2.84 3.22 -66.81 -0.22 2.62 16 8 H 0.08 1.43 7.53 -51.93 -0.39 1.04 16 9 C -0.13 -2.63 6.59 -25.61 -0.17 -2.80 16 10 C -0.10 -2.36 5.57 -25.08 -0.14 -2.50 16 11 C 0.05 1.22 2.82 -89.78 -0.25 0.97 16 12 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 13 C -0.52 -13.97 8.54 -34.44 -0.29 -14.26 16 14 H 0.06 1.48 7.78 -52.49 -0.41 1.08 16 15 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 16 N -0.89 -25.48 12.02 55.43 0.67 -24.81 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 21 C -0.13 -2.53 5.85 -25.07 -0.15 -2.68 16 22 N -0.56 -9.07 9.22 -13.93 -0.13 -9.19 16 23 C 0.19 2.40 11.00 -17.22 -0.19 2.21 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 26 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.41 7.09 8.67 -40.82 -0.35 6.73 16 29 H 0.05 1.05 7.92 -51.93 -0.41 0.63 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.75 7.37 -51.93 -0.38 1.37 16 32 H 0.05 1.16 8.04 -51.93 -0.42 0.74 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 35 H 0.05 1.02 7.97 -51.93 -0.41 0.61 16 36 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -29.98 300.34 -10.33 -40.31 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.29 Total: 4.01 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -4.67 Total: -9.64 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.11 Total: -55.43 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.98 -10.33 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393941663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.170 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds