Wall clock time and date at job start Mon Mar 30 2020 21:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86803 * 120.00172 * 2 1 4 4 H 1.48502 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47508 * 299.99825 * 3 2 1 6 6 H 1.48505 * 109.46734 * 59.99729 * 3 2 1 7 7 C 1.40271 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00018 * 159.22202 * 7 2 1 9 9 C 1.40082 * 119.99952 * 339.22312 * 7 2 1 10 10 C 1.48217 * 120.43677 * 141.24255 * 9 7 2 11 11 C 1.39091 * 128.84341 * 359.97438 * 10 9 7 12 12 C 1.35932 * 115.31365 * 180.02562 * 11 10 9 13 13 C 1.41596 * 124.84956 * 180.02562 * 12 11 10 14 14 O 1.21418 * 119.99665 * 179.97438 * 13 12 11 15 15 S 1.75493 * 110.29500 * 359.97438 * 12 11 10 16 16 C 1.39926 * 118.08388 * 180.02562 * 10 9 7 17 17 C 1.40084 * 120.06276 * 359.97438 * 16 10 9 18 18 C 1.37658 * 121.64531 * 0.02562 * 17 16 10 19 19 C 1.38491 * 121.09743 * 359.95541 * 18 17 16 20 20 O 1.35651 * 120.01288 * 180.02562 * 19 18 17 21 21 H 0.97001 * 119.99763 * 0.02562 * 1 2 3 22 22 H 1.07993 * 122.34762 * 359.75623 * 11 10 9 23 23 H 1.07996 * 120.00058 * 0.02562 * 13 12 11 24 24 H 1.08001 * 119.17941 * 179.97438 * 17 16 10 25 25 H 1.08000 * 119.45805 * 179.97438 * 18 17 16 26 26 H 0.96700 * 113.99544 * 84.97130 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3464 0.0006 5 1 1.8824 2.3965 -1.2124 6 1 1.8821 2.3964 1.2125 7 6 2.0083 -1.2148 0.0005 8 1 3.0357 -1.2453 -0.3313 9 6 1.3762 -2.3883 0.4314 10 6 1.6266 -3.6741 -0.2621 11 6 2.4481 -3.9303 -1.3548 12 6 2.4731 -5.2236 -1.7726 13 6 3.2375 -5.7074 -2.8619 14 8 3.1938 -6.8839 -3.1591 15 16 1.4237 -6.2081 -0.7679 16 6 0.9689 -4.8156 0.2092 17 6 0.1032 -4.7240 1.3067 18 6 -0.1262 -3.5275 1.9476 19 6 0.4943 -2.3619 1.5301 20 8 0.2526 -1.1950 2.1782 21 1 -0.4850 0.8401 -0.0004 22 1 3.0224 -3.1553 -1.8403 23 1 3.8599 -5.0302 -3.4278 24 1 -0.3974 -5.6140 1.6582 25 1 -0.8011 -3.4972 2.7902 26 1 0.8067 -1.0564 2.9585 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396350737.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:50:33 Heat of formation + Delta-G solvation = -57.103718 kcal Electronic energy + Delta-G solvation = -15069.169700 eV Core-core repulsion = 12396.662986 eV Total energy + Delta-G solvation = -2672.506714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 248.029 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28388 -39.69521 -37.76223 -35.64742 -34.93709 -31.71326 -30.09825 -27.35504 -25.54146 -23.68481 -22.04938 -21.22338 -19.69399 -18.49809 -17.98323 -17.03612 -16.81447 -16.39216 -15.70205 -15.44681 -15.30207 -14.98801 -14.39447 -14.24523 -13.74028 -13.42418 -13.28492 -12.83159 -12.60523 -12.40734 -11.97877 -11.59181 -11.46551 -11.13884 -10.79448 -10.74682 -9.98337 -9.12618 -8.88435 -8.49491 -6.39860 -0.57805 0.78121 0.84546 1.11984 1.32315 1.44898 1.50898 1.59753 2.15915 2.17573 2.60135 3.30981 3.70517 3.94091 4.26263 4.37233 4.52670 4.75424 4.88057 5.01377 5.05490 5.10256 5.32593 5.62223 5.77268 5.84674 5.90562 6.33039 6.53405 6.62228 6.64523 7.47109 8.13539 Molecular weight = 248.03amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.008105 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.709091 B = 3453.684704 C = 4365.704509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.051 3.949 3 Si 0.984 3.016 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.434 4.434 8 H 0.101 0.899 9 C 0.117 3.883 10 C -0.222 4.222 11 C 0.029 3.971 12 C -0.380 4.380 13 C 0.416 3.584 14 O -0.534 6.534 15 S 0.054 5.946 16 C -0.079 4.079 17 C -0.231 4.231 18 C -0.072 4.072 19 C -0.006 4.006 20 O -0.478 6.478 21 H 0.298 0.702 22 H 0.161 0.839 23 H 0.150 0.850 24 H 0.116 0.884 25 H 0.128 0.872 26 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 2.663 1.368 4.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.174 4.174 3 Si 0.804 3.196 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.459 4.459 8 H 0.119 0.881 9 C 0.111 3.889 10 C -0.227 4.227 11 C -0.002 4.002 12 C -0.495 4.495 13 C 0.283 3.717 14 O -0.416 6.416 15 S 0.318 5.682 16 C -0.195 4.195 17 C -0.258 4.258 18 C -0.094 4.094 19 C -0.055 4.055 20 O -0.284 6.284 21 H 0.109 0.891 22 H 0.179 0.821 23 H 0.166 0.834 24 H 0.134 0.866 25 H 0.145 0.855 26 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.733 0.700 0.638 2.892 hybrid contribution 0.495 1.995 0.621 2.147 sum 3.227 2.695 1.259 4.389 Atomic orbital electron populations 1.69690 1.09801 1.32010 1.25477 1.26762 0.95073 1.04262 0.91337 0.85113 0.79751 0.75804 0.78951 1.17362 1.19360 1.18969 1.19895 0.99816 0.91939 1.34251 0.88103 1.19060 0.89292 0.90583 0.89968 1.19336 1.07476 0.94506 1.01406 1.20659 0.92661 0.94846 0.92056 1.23775 1.16392 0.98064 1.11251 1.22268 0.78919 0.89604 0.80924 1.90505 1.62053 1.21890 1.67176 1.83647 1.46517 1.10415 1.27585 1.23056 1.00553 0.96178 0.99690 1.19712 1.07248 0.98026 1.00812 1.21036 0.97538 0.91702 0.99136 1.18248 1.05087 0.85259 0.96880 1.84933 1.62395 1.37250 1.43866 0.89115 0.82146 0.83423 0.86565 0.85456 0.78131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -34.41 11.28 21.89 0.25 -34.16 15 2 C 0.05 2.14 4.37 85.36 0.37 2.51 15 3 Si 0.98 31.51 29.61 68.60 2.03 33.54 15 4 H -0.25 -7.70 7.11 99.48 0.71 -6.99 15 5 H -0.27 -8.46 7.11 99.48 0.71 -7.75 15 6 H -0.27 -8.36 7.11 99.48 0.71 -7.65 15 7 C -0.43 -19.23 8.56 23.21 0.20 -19.03 15 8 H 0.10 4.14 7.93 -2.91 -0.02 4.11 15 9 C 0.12 5.51 5.55 -19.52 -0.11 5.40 15 10 C -0.22 -10.11 6.00 -20.01 -0.12 -10.23 15 11 C 0.03 1.14 9.71 21.94 0.21 1.35 15 12 C -0.38 -14.67 6.19 22.56 0.14 -14.53 15 13 C 0.42 13.95 11.35 68.65 0.78 14.73 15 14 O -0.53 -21.59 17.61 -3.46 -0.06 -21.65 15 15 S 0.05 2.25 22.94 -56.49 -1.30 0.95 15 16 C -0.08 -3.53 6.49 23.13 0.15 -3.38 15 17 C -0.23 -9.85 10.01 22.58 0.23 -9.62 15 18 C -0.07 -3.04 9.89 22.19 0.22 -2.82 15 19 C -0.01 -0.29 6.18 22.99 0.14 -0.15 15 20 O -0.48 -20.12 10.37 -89.66 -0.93 -21.05 15 21 H 0.30 12.35 8.29 -92.71 -0.77 11.58 15 22 H 0.16 5.32 8.02 -2.91 -0.02 5.29 15 23 H 0.15 3.39 8.06 -2.91 -0.02 3.36 15 24 H 0.12 4.41 8.06 -2.91 -0.02 4.39 15 25 H 0.13 4.62 8.06 -2.91 -0.02 4.59 15 26 H 0.37 12.10 9.06 -74.06 -0.67 11.43 15 Total: -1.00 -58.55 254.90 2.77 -55.78 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.56 Total: 22.36 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 2.21 Total: -35.77 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.25 Total: -34.16 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.99 Total: -42.70 kcal Atomic # 14 Polarization: 31.51 SS G_CDS: 2.03 Total: 33.54 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.30 Total: 0.95 kcal Total: -58.55 2.77 -55.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396350737.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.322 kcal (2) G-P(sol) polarization free energy of solvation -58.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds