Wall clock time and date at job start Mon Mar 30 2020 21:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46879 * 2 1 4 4 O 1.42898 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.35638 * 117.00430 * 180.02562 * 4 3 2 6 6 C 1.38670 * 120.15713 * 359.97438 * 5 4 3 7 7 C 1.38085 * 120.08687 * 180.23748 * 6 5 4 8 8 C 1.38688 * 120.42018 * 359.48358 * 7 6 5 9 9 C 1.50703 * 119.84010 * 180.26085 * 8 7 6 10 10 C 1.37704 * 120.31931 * 0.51447 * 8 7 6 11 11 C 1.39836 * 119.90030 * 359.74892 * 10 8 7 12 12 C 1.47536 * 120.20824 * 179.97438 * 11 10 8 13 13 O 1.21805 * 120.00247 * 180.02562 * 12 11 10 14 14 C 1.41836 * 119.99273 * 0.02562 * 12 11 10 15 15 H 1.08001 * 120.00311 * 0.02562 * 14 12 11 16 16 C 1.40321 * 119.99445 * 180.02562 * 14 12 11 17 17 N 1.30536 * 120.00506 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99727 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47001 * 90.00198 * 18 16 14 20 20 H 1.48502 * 109.46810 * 210.00126 * 18 16 14 21 21 H 1.48496 * 109.47076 * 330.00116 * 18 16 14 22 22 H 1.09002 * 109.46765 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47239 * 299.99766 * 1 2 3 24 24 H 1.08993 * 109.47236 * 60.00355 * 1 2 3 25 25 H 1.08998 * 109.47171 * 239.99749 * 2 1 3 26 26 H 1.08998 * 109.47165 * 120.00125 * 2 1 3 27 27 H 1.08998 * 109.47424 * 59.99903 * 3 2 1 28 28 H 1.09006 * 109.47167 * 299.99749 * 3 2 1 29 29 H 1.08002 * 119.95268 * 359.95318 * 6 5 4 30 30 H 1.08008 * 119.78908 * 179.72532 * 7 6 5 31 31 H 1.08994 * 109.47046 * 270.25799 * 9 8 7 32 32 H 1.09001 * 109.47186 * 30.25346 * 9 8 7 33 33 H 1.08997 * 109.47128 * 150.25423 * 9 8 7 34 34 H 1.07999 * 120.04878 * 179.76278 * 10 8 7 35 35 H 0.97001 * 120.00640 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0848 2.6511 -0.0001 6 6 3.3327 3.8162 0.0003 7 6 3.9611 5.0457 -0.0041 8 6 5.3456 5.1268 0.0016 9 6 6.0178 6.4756 0.0026 10 6 6.1091 3.9808 0.0012 11 6 5.4867 2.7286 0.0003 12 6 6.2980 1.4963 -0.0007 13 8 5.7520 0.4075 -0.0020 14 6 7.7139 1.5797 -0.0002 15 1 8.1981 2.5451 0.0014 16 6 8.4856 0.4077 -0.0017 17 7 7.9005 -0.7591 -0.0041 18 14 10.3505 0.5174 -0.0002 19 1 10.8437 0.5441 1.4002 20 1 10.9162 -0.6627 -0.7020 21 1 10.7739 1.7581 -0.6978 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 2.2541 3.7617 -0.0004 30 1 3.3707 5.9501 -0.0083 31 1 6.1801 6.8014 -1.0248 32 1 5.3832 7.1975 0.5166 33 1 6.9763 6.4035 0.5166 34 1 7.1869 4.0490 0.0019 35 1 8.4340 -1.5693 -0.0047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084917841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:50:27 Heat of formation + Delta-G solvation = -71.223761 kcal Electronic energy + Delta-G solvation = -17743.907921 eV Core-core repulsion = 14899.702234 eV Total energy + Delta-G solvation = -2844.205687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.52910 -37.24624 -36.10725 -33.68316 -32.55543 -31.18429 -30.54564 -27.01655 -26.33928 -25.28155 -22.99922 -21.68522 -20.52225 -19.15299 -17.41579 -16.38806 -15.80588 -15.40076 -15.20385 -14.14317 -13.84863 -13.81702 -13.56006 -13.21384 -13.17824 -12.66293 -12.24799 -12.11337 -11.93795 -11.55320 -11.43947 -11.30712 -11.15025 -10.96556 -10.86959 -10.66016 -10.39711 -10.19618 -10.07205 -10.04404 -8.90334 -8.13282 -7.30226 -7.26498 -6.18580 -4.79009 1.85525 2.09347 3.09740 3.17029 3.20370 3.84770 4.06947 4.09255 4.69479 5.11722 5.11750 5.30879 5.39550 5.43419 5.47933 5.56655 5.63426 5.69024 5.82290 5.88972 5.94827 5.97093 6.04052 6.20669 6.29549 6.33267 6.36200 6.50780 6.77311 6.96971 6.99702 7.22379 7.34914 7.55039 8.12132 8.22174 8.89188 8.94971 10.43031 10.66696 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.007991 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.800859 B = 3502.909894 C = 5201.659396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.055 3.945 4 O -0.270 6.270 5 C 0.147 3.853 6 C -0.226 4.226 7 C -0.091 4.091 8 C -0.147 4.147 9 C -0.101 4.101 10 C -0.057 4.057 11 C -0.134 4.134 12 C 0.391 3.609 13 O -0.518 6.518 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.081 3.919 17 N -0.738 5.738 18 Si 0.904 3.096 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.134 0.866 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 7.944 0.001 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.021 4.021 4 O -0.182 6.182 5 C 0.100 3.900 6 C -0.245 4.245 7 C -0.109 4.109 8 C -0.148 4.148 9 C -0.158 4.158 10 C -0.075 4.075 11 C -0.136 4.136 12 C 0.285 3.715 13 O -0.405 6.405 14 C -0.553 4.553 15 H 0.090 0.910 16 C -0.142 4.142 17 N -0.368 5.368 18 Si 0.728 3.272 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.186 1.186 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.124 7.023 -0.005 10.739 hybrid contribution 0.676 0.459 0.000 0.817 sum -7.448 7.482 -0.004 10.557 Atomic orbital electron populations 1.21683 0.95009 1.02016 1.01645 1.21423 0.94958 0.95389 1.04243 1.22773 0.80926 0.98282 1.00155 1.86450 1.18650 1.25864 1.87234 1.19410 0.92055 0.83909 0.94601 1.21061 0.99138 0.92619 1.11688 1.20661 0.93843 0.96266 1.00158 1.19726 0.93545 0.95374 1.06127 1.20632 1.00100 0.93634 1.01453 1.21270 1.00101 0.90152 0.95955 1.21535 0.90735 0.98708 1.02616 1.17989 0.88526 0.85435 0.79583 1.90543 1.74243 1.28449 1.47263 1.20899 0.92955 0.93402 1.48066 0.91019 1.25957 1.00454 0.94929 0.92834 1.69970 1.37000 0.98258 1.31540 0.86422 0.82836 0.78856 0.79091 1.19484 1.20256 1.18581 0.92067 0.92740 0.92747 0.90685 0.90686 0.93015 0.93026 0.86437 0.86972 0.92102 0.92503 0.91915 0.84811 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.85 6.30 -26.73 -0.17 -2.02 16 3 C 0.05 0.92 4.74 37.16 0.18 1.10 16 4 O -0.27 -6.29 8.22 -40.44 -0.33 -6.62 16 5 C 0.15 3.35 6.71 -38.61 -0.26 3.09 16 6 C -0.23 -4.16 9.03 -39.48 -0.36 -4.52 16 7 C -0.09 -1.53 9.69 -39.47 -0.38 -1.91 16 8 C -0.15 -2.59 5.88 -104.65 -0.61 -3.21 16 9 C -0.10 -1.36 10.00 36.01 0.36 -1.00 16 10 C -0.06 -1.19 9.07 -39.18 -0.36 -1.54 16 11 C -0.13 -3.34 5.90 -104.69 -0.62 -3.96 16 12 C 0.39 11.54 6.91 -34.42 -0.24 11.31 16 13 O -0.52 -17.02 13.71 -16.74 -0.23 -17.25 16 14 C -0.52 -14.73 8.86 -37.42 -0.33 -15.06 16 15 H 0.07 1.83 6.02 -52.49 -0.32 1.51 16 16 C 0.08 2.22 5.50 -17.32 -0.10 2.13 16 17 N -0.74 -21.76 11.73 55.56 0.65 -21.11 16 18 Si 0.90 19.65 29.56 -169.99 -5.03 14.63 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 28 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 29 H 0.12 1.82 6.30 -52.49 -0.33 1.49 16 30 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.13 2.70 6.20 -52.49 -0.33 2.37 16 35 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -33.94 298.26 -7.66 -41.59 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.70 Total: 1.10 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -2.51 Total: -16.83 kcal Atomic # 7 Polarization: -21.76 SS G_CDS: 0.65 Total: -21.11 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.56 Total: -23.87 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.94 -7.66 -41.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084917841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.632 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds