Wall clock time and date at job start Mon Mar 30 2020 21:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46879 * 2 1 4 4 O 1.42898 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.35638 * 117.00430 * 180.02562 * 4 3 2 6 6 C 1.38670 * 120.15713 * 359.97438 * 5 4 3 7 7 C 1.38085 * 120.08687 * 180.23748 * 6 5 4 8 8 C 1.38688 * 120.42018 * 359.48358 * 7 6 5 9 9 C 1.50703 * 119.84010 * 180.26085 * 8 7 6 10 10 C 1.37704 * 120.31931 * 0.51447 * 8 7 6 11 11 C 1.39836 * 119.90030 * 359.74892 * 10 8 7 12 12 C 1.47536 * 120.20824 * 179.97438 * 11 10 8 13 13 O 1.21805 * 120.00247 * 180.02562 * 12 11 10 14 14 C 1.41836 * 119.99273 * 0.02562 * 12 11 10 15 15 H 1.08001 * 120.00311 * 0.02562 * 14 12 11 16 16 C 1.40321 * 119.99445 * 180.02562 * 14 12 11 17 17 N 1.30536 * 120.00506 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99727 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47001 * 90.00198 * 18 16 14 20 20 H 1.48502 * 109.46810 * 210.00126 * 18 16 14 21 21 H 1.48496 * 109.47076 * 330.00116 * 18 16 14 22 22 H 1.09002 * 109.46765 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47239 * 299.99766 * 1 2 3 24 24 H 1.08993 * 109.47236 * 60.00355 * 1 2 3 25 25 H 1.08998 * 109.47171 * 239.99749 * 2 1 3 26 26 H 1.08998 * 109.47165 * 120.00125 * 2 1 3 27 27 H 1.08998 * 109.47424 * 59.99903 * 3 2 1 28 28 H 1.09006 * 109.47167 * 299.99749 * 3 2 1 29 29 H 1.08002 * 119.95268 * 359.95318 * 6 5 4 30 30 H 1.08008 * 119.78908 * 179.72532 * 7 6 5 31 31 H 1.08994 * 109.47046 * 270.25799 * 9 8 7 32 32 H 1.09001 * 109.47186 * 30.25346 * 9 8 7 33 33 H 1.08997 * 109.47128 * 150.25423 * 9 8 7 34 34 H 1.07999 * 120.04878 * 179.76278 * 10 8 7 35 35 H 0.97001 * 120.00640 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0848 2.6511 -0.0001 6 6 3.3327 3.8162 0.0003 7 6 3.9611 5.0457 -0.0041 8 6 5.3456 5.1268 0.0016 9 6 6.0178 6.4756 0.0026 10 6 6.1091 3.9808 0.0012 11 6 5.4867 2.7286 0.0003 12 6 6.2980 1.4963 -0.0007 13 8 5.7520 0.4075 -0.0020 14 6 7.7139 1.5797 -0.0002 15 1 8.1981 2.5451 0.0014 16 6 8.4856 0.4077 -0.0017 17 7 7.9005 -0.7591 -0.0041 18 14 10.3505 0.5174 -0.0002 19 1 10.8437 0.5441 1.4002 20 1 10.9162 -0.6627 -0.7020 21 1 10.7739 1.7581 -0.6978 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 2.2541 3.7617 -0.0004 30 1 3.3707 5.9501 -0.0083 31 1 6.1801 6.8014 -1.0248 32 1 5.3832 7.1975 0.5166 33 1 6.9763 6.4035 0.5166 34 1 7.1869 4.0490 0.0019 35 1 8.4340 -1.5693 -0.0047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084917841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:50:27 Heat of formation + Delta-G solvation = -91.881453 kcal Electronic energy + Delta-G solvation = -17744.803705 eV Core-core repulsion = 14899.702234 eV Total energy + Delta-G solvation = -2845.101471 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.10192 -38.84779 -38.10285 -34.95473 -34.63913 -32.57711 -32.19912 -28.83753 -27.81865 -26.54368 -24.67352 -23.15580 -21.92017 -20.93068 -18.97748 -18.41411 -17.19248 -17.17742 -16.85235 -15.77231 -15.30994 -15.17809 -14.94723 -14.81997 -14.48954 -14.33152 -13.93850 -13.49420 -13.25603 -13.03709 -12.91781 -12.69519 -12.63912 -12.61409 -12.26054 -12.07457 -11.97083 -11.91625 -11.68575 -11.41336 -10.96941 -9.73990 -9.47037 -8.82635 -8.27632 -7.01740 0.25155 0.57733 1.36634 1.38616 1.54314 2.21946 2.27537 2.44269 2.87810 3.78781 3.86263 3.91099 3.98179 4.06639 4.16218 4.25232 4.40340 4.49744 4.49967 4.53013 4.76774 4.85875 4.89796 4.97191 5.09003 5.14330 5.18136 5.22269 5.25483 5.34446 5.43281 5.50332 5.77756 5.96866 6.09170 6.66823 6.74024 6.90877 8.33854 8.55940 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.007991 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.800859 B = 3502.909894 C = 5201.659396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.047 3.953 4 O -0.318 6.318 5 C 0.122 3.878 6 C -0.219 4.219 7 C -0.073 4.073 8 C -0.142 4.142 9 C -0.099 4.099 10 C -0.064 4.064 11 C -0.191 4.191 12 C 0.365 3.635 13 O -0.574 6.574 14 C -0.551 4.551 15 H 0.091 0.909 16 C 0.022 3.978 17 N -0.793 5.793 18 Si 0.996 3.004 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.245 1.245 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.163 0.837 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.309 11.415 -0.005 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C -0.028 4.028 4 O -0.231 6.231 5 C 0.076 3.924 6 C -0.237 4.237 7 C -0.091 4.091 8 C -0.142 4.142 9 C -0.155 4.155 10 C -0.082 4.082 11 C -0.192 4.192 12 C 0.263 3.737 13 O -0.467 6.467 14 C -0.581 4.581 15 H 0.109 0.891 16 C -0.196 4.196 17 N -0.423 5.423 18 Si 0.814 3.186 19 H -0.182 1.182 20 H -0.193 1.193 21 H -0.168 1.168 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.169 0.831 30 H 0.181 0.819 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.553 10.530 -0.010 13.566 hybrid contribution 0.689 -0.536 0.003 0.873 sum -7.864 9.994 -0.007 12.717 Atomic orbital electron populations 1.21631 0.91184 1.03310 1.03087 1.21483 0.98095 0.94325 1.02202 1.23126 0.78220 0.99557 1.01876 1.86398 1.21913 1.27226 1.87569 1.19679 0.91846 0.85266 0.95639 1.21422 1.00606 0.91582 1.10130 1.21281 0.93881 0.97332 0.96602 1.20201 0.94154 0.96051 1.03838 1.20714 1.00481 0.91356 1.02979 1.21323 1.00354 0.90162 0.96358 1.21250 0.92064 0.98190 1.07745 1.18758 0.89956 0.86590 0.78391 1.90473 1.75397 1.30846 1.49934 1.21415 0.93349 0.94876 1.48509 0.89075 1.27276 1.07144 0.93911 0.91271 1.70136 1.39976 0.99571 1.32570 0.85055 0.74119 0.79647 0.79777 1.18241 1.19344 1.16786 0.90936 0.91237 0.91246 0.92801 0.92798 0.91032 0.91045 0.83113 0.81921 0.90494 0.89565 0.91588 0.85128 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.91 71.98 0.71 -2.07 16 2 C -0.12 -3.87 6.30 30.60 0.19 -3.68 16 3 C 0.05 1.60 4.74 71.98 0.34 1.94 16 4 O -0.32 -15.66 8.22 -68.64 -0.56 -16.23 16 5 C 0.12 5.72 6.71 22.90 0.15 5.88 16 6 C -0.22 -7.56 9.03 22.34 0.20 -7.36 16 7 C -0.07 -2.15 9.69 22.34 0.22 -1.93 16 8 C -0.14 -4.59 5.88 -19.88 -0.12 -4.71 16 9 C -0.10 -2.20 10.00 71.24 0.71 -1.49 16 10 C -0.06 -2.70 9.07 22.53 0.20 -2.49 16 11 C -0.19 -9.97 5.90 -19.91 -0.12 -10.09 16 12 C 0.37 23.14 6.91 25.61 0.18 23.31 16 13 O -0.57 -41.03 13.71 16.19 0.22 -40.80 16 14 C -0.55 -32.64 8.86 23.67 0.21 -32.43 16 15 H 0.09 4.81 6.02 -2.91 -0.02 4.79 16 16 C 0.02 1.24 5.50 85.39 0.47 1.71 16 17 N -0.79 -49.44 11.73 21.88 0.26 -49.18 16 18 Si 1.00 41.09 29.56 68.60 2.03 43.12 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.24 -9.33 7.11 99.48 0.71 -8.62 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 2.09 7.66 -2.39 -0.02 2.07 16 28 H 0.07 2.09 7.66 -2.38 -0.02 2.07 16 29 H 0.15 4.09 6.30 -2.91 -0.02 4.07 16 30 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 33 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.13 5.37 6.20 -2.91 -0.02 5.35 16 35 H 0.28 15.57 8.29 -92.71 -0.77 14.80 16 Total: -1.00 -82.64 298.26 6.38 -76.26 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.08 Total: 20.24 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.36 Total: -33.41 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.26 Total: -49.18 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -0.34 Total: -57.03 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -82.64 6.38 -76.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084917841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.625 kcal (2) G-P(sol) polarization free energy of solvation -82.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds