Wall clock time and date at job start Mon Mar 30 2020 21:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99936 * 2 1 4 4 C 1.38755 * 120.05693 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.94399 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05844 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94731 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47170 * 164.03690 * 7 6 5 9 9 C 1.50701 * 109.47050 * 44.03350 * 7 6 5 10 10 H 1.07999 * 120.00167 * 354.90751 * 9 7 6 11 11 C 1.37875 * 119.99915 * 174.90624 * 9 7 6 12 12 N 1.31520 * 119.99983 * 359.69376 * 11 9 7 13 13 Si 1.86802 * 120.00025 * 179.68928 * 11 9 7 14 14 H 1.48495 * 109.47089 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46508 * 120.00429 * 13 11 9 16 16 H 1.48496 * 109.47308 * 240.00252 * 13 11 9 17 17 C 1.53000 * 109.46652 * 284.03879 * 7 6 5 18 18 C 1.52999 * 109.47159 * 297.50672 * 17 7 6 19 19 C 1.53000 * 109.47735 * 57.50859 * 17 7 6 20 20 C 1.38247 * 120.10955 * 359.97438 * 6 5 4 21 21 C 1.38163 * 120.05642 * 0.02562 * 20 6 5 22 22 C 1.50702 * 120.03031 * 179.97438 * 21 20 6 23 23 H 1.08996 * 109.46752 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46806 * 299.99658 * 1 2 3 25 25 H 1.09001 * 109.47328 * 59.99491 * 1 2 3 26 26 H 1.08004 * 120.02561 * 359.74228 * 4 3 2 27 27 H 1.08002 * 119.97098 * 179.97438 * 5 4 3 28 28 H 0.97001 * 119.99865 * 179.97438 * 12 11 9 29 29 H 1.09003 * 109.46906 * 177.51213 * 17 7 6 30 30 H 1.09006 * 109.46816 * 57.13101 * 18 17 7 31 31 H 1.09001 * 109.47289 * 177.12871 * 18 17 7 32 32 H 1.08999 * 109.47453 * 297.13501 * 18 17 7 33 33 H 1.09005 * 109.46382 * 52.70466 * 19 17 7 34 34 H 1.08995 * 109.47365 * 172.70396 * 19 17 7 35 35 H 1.08997 * 109.47200 * 292.71321 * 19 17 7 36 36 H 1.07996 * 119.97245 * 179.97438 * 20 6 5 37 37 H 1.08993 * 109.46950 * 270.02249 * 22 21 20 38 38 H 1.09006 * 109.46699 * 30.01865 * 22 21 20 39 39 H 1.08994 * 109.47116 * 150.01514 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0186 -0.0005 8 1 5.0315 4.8937 0.2816 9 6 3.3044 5.9297 0.9875 10 1 2.4111 5.6011 1.4978 11 6 3.8212 7.1827 1.2400 12 7 4.9125 7.5806 0.6230 13 14 2.9714 8.3155 2.4582 14 1 1.7728 7.6363 3.0126 15 1 3.9076 8.6463 3.5625 16 1 2.5586 9.5640 1.7684 17 6 3.9053 5.6320 -1.3998 18 6 4.6509 4.7379 -2.3926 19 6 2.4392 5.7500 -1.8212 20 6 4.0560 2.5171 0.0000 21 6 3.4312 1.2848 0.0005 22 6 4.2538 0.0221 0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2128 2.3204 -0.0033 27 1 1.3340 4.5114 0.0000 28 1 5.2758 8.4623 0.8004 29 1 4.3611 6.6221 -1.3894 30 1 4.2277 3.7337 -2.3658 31 1 4.5502 5.1479 -3.3975 32 1 5.7058 4.6949 -2.1216 33 1 1.8804 6.2775 -1.0481 34 1 2.3738 6.3030 -2.7582 35 1 2.0189 4.7535 -1.9572 36 1 5.1344 2.5752 -0.0008 37 1 4.4520 -0.2823 -1.0271 38 1 5.1979 0.2036 0.5143 39 1 3.7065 -0.7680 0.5145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084397607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:52:27 Heat of formation + Delta-G solvation = -36.315797 kcal Electronic energy + Delta-G solvation = -18649.581311 eV Core-core repulsion = 15942.722441 eV Total energy + Delta-G solvation = -2706.858869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80248 -37.71133 -35.22812 -32.18880 -31.95127 -29.84225 -27.57363 -27.17379 -26.05104 -25.51717 -23.17335 -21.39675 -20.39922 -18.37133 -17.44525 -16.30405 -15.65379 -15.43871 -14.82431 -14.15395 -13.86190 -13.53172 -13.33096 -13.00049 -12.85542 -12.56838 -12.36841 -11.87661 -11.71294 -11.63732 -11.47292 -11.16452 -10.98625 -10.94788 -10.59477 -10.51906 -10.34511 -9.90890 -9.76642 -9.61592 -9.07749 -8.86599 -8.36007 -8.10131 -7.21831 -6.01028 -4.04664 2.01095 2.19257 3.28608 3.37429 3.40825 3.64694 4.39725 4.51501 5.18112 5.28461 5.30367 5.31704 5.44743 5.55226 5.72148 5.91390 5.99517 6.05780 6.14993 6.21331 6.25657 6.31000 6.35681 6.46534 6.56150 6.72884 6.79602 6.91161 6.98216 7.01072 7.20080 7.29084 7.40449 7.49912 7.55038 7.78757 7.88027 7.99281 8.08857 8.42937 8.97486 9.58558 11.06107 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.006887 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.603671 B = 4064.502421 C = 4422.658061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.324 6.324 3 C 0.092 3.908 4 C -0.211 4.211 5 C -0.075 4.075 6 C -0.056 4.056 7 C 0.085 3.915 8 H 0.037 0.963 9 C -0.504 4.504 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.888 5.888 13 Si 0.886 3.114 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.083 4.083 18 C -0.144 4.144 19 C -0.135 4.135 20 C -0.096 4.096 21 C -0.125 4.125 22 C -0.098 4.098 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.259 0.741 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.039 0.961 36 H 0.119 0.881 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 -10.633 -3.000 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.049 3.951 4 C -0.229 4.229 5 C -0.093 4.093 6 C -0.056 4.056 7 C 0.066 3.934 8 H 0.056 0.944 9 C -0.542 4.542 10 H 0.076 0.924 11 C -0.138 4.138 12 N -0.527 5.527 13 Si 0.714 3.286 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.102 4.102 18 C -0.202 4.202 19 C -0.192 4.192 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.154 4.154 23 H 0.109 0.891 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.133 0.867 27 H 0.147 0.853 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.137 0.863 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.054 -10.673 -3.008 12.186 hybrid contribution -0.736 0.915 0.669 1.352 sum -5.790 -9.758 -2.339 11.585 Atomic orbital electron populations 1.22903 0.79574 1.02850 1.01070 1.85973 1.20349 1.27703 1.89767 1.18650 0.91680 0.83605 1.01204 1.21163 0.99034 0.92776 1.09951 1.21046 0.95063 0.96266 0.96949 1.20493 0.93394 0.96693 0.95062 1.17868 0.95809 0.86769 0.92919 0.94444 1.21192 1.11136 0.99082 1.22805 0.92364 1.24937 0.94910 0.98005 0.95959 1.69916 1.20891 1.19572 1.42320 0.86624 0.79721 0.80897 0.81338 1.19807 1.21097 1.21081 1.21065 0.93980 1.00802 0.94309 1.21925 1.00053 0.99713 0.98486 1.21906 0.98622 0.99577 0.99131 1.20863 0.99475 0.90735 1.00330 1.19112 0.90380 0.95802 1.07233 1.20515 0.98609 0.94894 1.01424 0.89096 0.93114 0.93157 0.86702 0.85316 0.93063 0.88852 0.93958 0.94860 0.93818 0.91912 0.95697 0.94234 0.86260 0.92223 0.92167 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.03 9.54 -19.43 -0.19 -5.22 16 3 C 0.09 1.63 6.66 -39.21 -0.26 1.36 16 4 C -0.21 -3.71 9.04 -39.43 -0.36 -4.07 16 5 C -0.08 -1.50 6.56 -39.61 -0.26 -1.76 16 6 C -0.06 -1.19 3.65 -104.60 -0.38 -1.57 16 7 C 0.08 2.02 1.76 -92.92 -0.16 1.86 16 8 H 0.04 0.99 7.96 -51.93 -0.41 0.57 16 9 C -0.50 -13.14 6.66 -34.44 -0.23 -13.37 16 10 H 0.06 1.52 6.75 -52.49 -0.35 1.17 16 11 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 12 N -0.89 -24.61 11.71 55.43 0.65 -23.96 16 13 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C -0.08 -1.86 2.58 -90.62 -0.23 -2.09 16 18 C -0.14 -2.85 8.98 37.16 0.33 -2.51 16 19 C -0.14 -2.79 7.64 37.16 0.28 -2.50 16 20 C -0.10 -1.86 8.63 -39.61 -0.34 -2.20 16 21 C -0.12 -2.22 5.89 -104.47 -0.62 -2.83 16 22 C -0.10 -1.42 9.79 36.01 0.35 -1.07 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 25 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 26 H 0.12 1.72 6.30 -52.48 -0.33 1.39 16 27 H 0.13 2.60 5.84 -52.49 -0.31 2.29 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.09 2.39 6.45 -51.93 -0.33 2.05 16 30 H 0.04 0.81 6.70 -51.93 -0.35 0.46 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.36 6.58 -51.93 -0.34 1.02 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.77 6.00 -51.93 -0.31 0.45 16 36 H 0.12 2.19 8.00 -52.49 -0.42 1.77 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.06 0.87 7.53 -51.93 -0.39 0.48 16 LS Contribution 305.61 15.07 4.61 4.61 Total: -1.00 -27.93 305.61 -6.94 -34.88 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.02 Total: 1.68 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -0.98 Total: -27.81 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.65 Total: -23.96 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.19 Total: -5.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.93 -6.94 -34.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084397607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.437 kcal (2) G-P(sol) polarization free energy of solvation -27.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds