Wall clock time and date at job start Mon Mar 30 2020 21:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.47106 * 2 1 4 4 C 1.46899 * 110.99735 * 164.56653 * 3 2 1 5 5 C 1.50707 * 109.47211 * 286.61201 * 4 3 2 6 6 H 1.07997 * 119.99594 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00060 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99947 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47215 * 59.99302 * 9 7 5 11 11 H 1.48498 * 109.47399 * 179.97438 * 9 7 5 12 12 H 1.48511 * 109.46703 * 299.99682 * 9 7 5 13 13 C 1.39667 * 111.00062 * 288.52018 * 3 2 1 14 14 C 1.38938 * 120.07613 * 306.50153 * 13 3 2 15 15 C 1.38080 * 119.92666 * 179.79114 * 14 13 3 16 16 C 1.38316 * 120.07262 * 0.48472 * 15 14 13 17 17 C 1.38261 * 120.14816 * 359.74645 * 16 15 14 18 18 C 1.38124 * 120.07858 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.03707 * 179.97438 * 18 17 16 20 20 H 1.09007 * 109.46723 * 212.57330 * 19 18 17 21 21 C 1.53001 * 109.46863 * 92.57914 * 19 18 17 22 22 N 1.46900 * 109.47348 * 332.57228 * 19 18 17 23 23 H 1.09006 * 109.47012 * 294.80879 * 1 2 3 24 24 H 1.08996 * 109.47028 * 54.80896 * 1 2 3 25 25 H 1.09006 * 109.47136 * 174.81359 * 1 2 3 26 26 H 1.09001 * 109.47074 * 239.99729 * 2 1 3 27 27 H 1.08998 * 109.47008 * 120.00274 * 2 1 3 28 28 H 1.09003 * 109.47289 * 46.61397 * 4 3 2 29 29 H 1.09004 * 109.46788 * 166.61326 * 4 3 2 30 30 H 0.97001 * 120.00138 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.03104 * 359.97438 * 14 13 3 32 32 H 1.07991 * 119.96616 * 180.25276 * 15 14 13 33 33 H 1.08000 * 119.92229 * 179.77067 * 16 15 14 34 34 H 1.08005 * 119.96190 * 180.02562 * 17 16 15 35 35 H 1.08993 * 109.47466 * 65.83590 * 21 19 18 36 36 H 1.09001 * 109.47224 * 185.83703 * 21 19 18 37 37 H 1.08996 * 109.46782 * 305.83517 * 21 19 18 38 38 H 1.00892 * 111.00089 * 296.04655 * 22 19 18 39 39 H 1.00900 * 110.99396 * 60.00245 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4415 1.4406 0.3650 5 6 3.5920 1.1761 1.8410 6 1 2.7188 0.9853 2.4471 7 6 4.8445 1.1777 2.4174 8 7 5.9079 1.4095 1.6791 9 14 5.0312 0.8491 4.2468 10 1 4.4911 -0.4970 4.5656 11 1 6.4685 0.9054 4.6158 12 1 4.2821 1.8772 5.0133 13 6 1.7960 1.9950 -1.2364 14 6 2.2492 1.3912 -2.4028 15 6 2.0227 1.9948 -3.6238 16 6 1.3542 3.2041 -3.6857 17 6 0.9061 3.8100 -2.5265 18 6 1.1252 3.2094 -1.3022 19 6 0.6369 3.8708 -0.0393 20 1 1.3218 3.6440 0.7779 21 6 -0.7586 3.3461 0.3045 22 7 0.5779 5.3250 -0.2393 23 1 -0.3633 0.4312 0.9329 24 1 -0.3633 0.5922 -0.8398 25 1 -0.3634 -1.0235 -0.0929 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.9908 0.6855 -0.1974 29 1 3.8384 2.4284 0.1305 30 1 6.7891 1.4102 2.0846 31 1 2.7755 0.4494 -2.3546 32 1 2.3711 1.5241 -4.5311 33 1 1.1815 3.6759 -4.6418 34 1 0.3840 4.7541 -2.5784 35 1 -0.6973 2.2870 0.5542 36 1 -1.1546 3.8981 1.1569 37 1 -1.4183 3.4796 -0.5529 38 1 1.4979 5.7049 -0.4041 39 1 -0.0511 5.5610 -0.9922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:52:11 Heat of formation + Delta-G solvation = 26.251311 kcal Electronic energy + Delta-G solvation = -18790.366150 eV Core-core repulsion = 16118.513145 eV Total energy + Delta-G solvation = -2671.853005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78844 -36.41839 -35.30128 -32.71101 -30.60197 -29.79009 -29.33943 -28.20505 -26.00697 -23.18981 -22.64728 -22.36055 -19.94467 -19.81414 -16.81563 -16.19915 -15.75904 -15.12801 -14.97504 -14.83420 -14.05151 -13.90879 -13.70062 -13.22496 -12.94864 -12.52962 -12.42059 -12.12900 -11.93218 -11.63683 -11.31955 -11.04525 -10.96537 -10.81916 -10.78630 -10.56720 -10.42794 -10.32542 -9.98867 -9.37257 -8.66504 -8.46158 -8.37903 -8.11115 -7.38994 -6.05546 -4.07774 1.70588 1.73513 3.32479 3.36734 3.39690 4.08928 4.39284 4.75824 4.90873 5.15000 5.18057 5.29778 5.34095 5.56976 5.67214 5.76175 5.82362 5.85617 5.90190 5.95057 6.17613 6.18937 6.28497 6.35835 6.45623 6.57053 6.66890 6.72821 6.79551 6.85611 6.96692 7.12170 7.25257 7.36304 7.48265 7.72605 7.80949 8.05158 8.13295 8.56039 8.99345 9.56635 11.04801 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.007235 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.719330 B = 3869.053296 C = 4071.945117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.504 5.504 4 C 0.203 3.797 5 C -0.508 4.508 6 H 0.065 0.935 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.129 3.871 14 C -0.152 4.152 15 C -0.117 4.117 16 C -0.137 4.137 17 C -0.124 4.124 18 C -0.102 4.102 19 C 0.134 3.866 20 H 0.110 0.890 21 C -0.136 4.136 22 N -0.843 5.843 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.024 0.976 27 H 0.087 0.913 28 H -0.004 1.004 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.040 0.960 38 H 0.341 0.659 39 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 2.019 -8.050 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 N -0.226 5.226 4 C 0.080 3.920 5 C -0.546 4.546 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.033 3.967 14 C -0.173 4.173 15 C -0.136 4.136 16 C -0.155 4.155 17 C -0.143 4.143 18 C -0.105 4.105 19 C 0.023 3.977 20 H 0.128 0.872 21 C -0.194 4.194 22 N -0.371 5.371 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.105 0.895 28 H 0.014 0.986 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.153 0.847 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.686 2.318 -6.875 12.916 hybrid contribution 1.234 -0.871 -0.818 1.718 sum -9.451 1.448 -7.693 12.272 Atomic orbital electron populations 1.21865 0.96368 1.00239 1.01814 1.22053 0.94436 0.89135 1.01158 1.59889 1.22883 1.16365 1.23416 1.19754 0.79127 0.96780 0.96362 1.21089 0.92585 1.48008 0.92961 0.91690 1.24983 0.95792 0.95415 0.98310 1.69951 0.98329 1.49636 1.35777 0.86550 0.76856 0.78848 0.85106 1.20276 1.21396 1.20071 1.18970 0.94366 0.93701 0.89628 1.21781 1.00809 1.01222 0.93460 1.20931 0.99584 0.95851 0.97218 1.20924 1.00672 0.96191 0.97724 1.20785 1.01342 0.99939 0.92197 1.20746 0.98335 0.95441 0.95977 1.20308 0.98049 0.84827 0.94551 0.87184 1.21815 0.94824 1.02191 1.00570 1.59111 1.15279 1.11968 1.50734 0.92034 0.93360 0.93309 0.95775 0.89480 0.98631 0.95358 0.92826 0.86477 0.86886 0.86858 0.86832 0.90858 0.92304 0.94087 0.84686 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.92 37.16 0.33 -1.92 16 2 C 0.06 1.11 5.38 -3.82 -0.02 1.09 16 3 N -0.50 -10.45 3.38 -172.47 -0.58 -11.03 16 4 C 0.20 5.16 4.45 -4.97 -0.02 5.13 16 5 C -0.51 -13.87 8.43 -34.44 -0.29 -14.16 16 6 H 0.06 1.75 7.72 -52.49 -0.40 1.35 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.13 2.42 3.66 -83.79 -0.31 2.12 16 14 C -0.15 -2.70 8.78 -39.38 -0.35 -3.04 16 15 C -0.12 -1.77 10.04 -39.61 -0.40 -2.17 16 16 C -0.14 -1.92 10.04 -39.54 -0.40 -2.31 16 17 C -0.12 -1.79 9.27 -39.61 -0.37 -2.16 16 18 C -0.10 -1.72 5.05 -104.42 -0.53 -2.24 16 19 C 0.13 2.19 3.32 -68.86 -0.23 1.97 16 20 H 0.11 2.21 7.54 -51.93 -0.39 1.82 16 21 C -0.14 -2.02 9.47 37.16 0.35 -1.67 16 22 N -0.84 -11.86 8.88 -5.65 -0.05 -11.91 16 23 H 0.06 0.95 6.96 -51.93 -0.36 0.59 16 24 H 0.05 0.75 7.23 -51.93 -0.38 0.37 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.02 0.44 6.42 -51.93 -0.33 0.11 16 27 H 0.09 1.77 7.18 -51.93 -0.37 1.40 16 28 H 0.00 -0.11 8.03 -51.93 -0.42 -0.53 16 29 H 0.03 0.79 7.95 -51.93 -0.41 0.38 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.12 2.10 7.02 -52.49 -0.37 1.73 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.11 1.36 6.32 -52.48 -0.33 1.03 16 35 H 0.07 1.13 5.32 -51.93 -0.28 0.86 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.34 4.74 9.06 -39.30 -0.36 4.38 16 39 H 0.33 3.95 7.19 -39.29 -0.28 3.66 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -28.74 311.46 -8.48 -37.21 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.93 Total: 8.16 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.32 Total: -17.89 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.10 Total: -48.59 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.74 -8.48 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.463 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds