Wall clock time and date at job start Mon Mar 30 2020 21:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47382 * 2 1 4 4 N 1.46894 * 109.47218 * 120.00693 * 2 1 3 5 5 C 1.50707 * 109.46798 * 240.00341 * 2 1 3 6 6 C 1.38127 * 120.03572 * 264.72153 * 5 2 1 7 7 C 1.38268 * 120.07055 * 179.74938 * 6 5 2 8 8 C 1.38300 * 120.15078 * 0.55339 * 7 6 5 9 9 C 1.38085 * 120.07711 * 359.70337 * 8 7 6 10 10 C 1.38889 * 120.03787 * 85.00384 * 5 2 1 11 11 N 1.39674 * 120.07705 * 359.94959 * 10 5 2 12 12 C 1.46902 * 111.00143 * 246.99678 * 11 10 5 13 13 C 1.46896 * 110.99975 * 123.03467 * 11 10 5 14 14 H 1.09003 * 109.47127 * 62.81221 * 13 11 10 15 15 C 1.53005 * 109.46956 * 182.80939 * 13 11 10 16 16 C 1.50700 * 109.47161 * 302.80955 * 13 11 10 17 17 H 1.07992 * 120.00328 * 359.97438 * 16 13 11 18 18 C 1.37886 * 119.99610 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99596 * 180.02562 * 18 16 13 20 20 Si 1.86795 * 119.99969 * 0.02562 * 18 16 13 21 21 H 1.48499 * 109.47362 * 90.00165 * 20 18 16 22 22 H 1.48509 * 109.47043 * 209.99944 * 20 18 16 23 23 H 1.48503 * 109.47485 * 329.99856 * 20 18 16 24 24 H 1.08998 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47007 * 299.99640 * 1 2 3 26 26 H 1.08997 * 109.47451 * 59.99618 * 1 2 3 27 27 H 1.00900 * 111.00465 * 59.99675 * 4 2 1 28 28 H 1.00902 * 111.00294 * 183.95787 * 4 2 1 29 29 H 1.08001 * 119.96273 * 0.02769 * 6 5 2 30 30 H 1.07999 * 119.92385 * 180.27839 * 7 6 5 31 31 H 1.08004 * 119.96143 * 179.72440 * 8 7 6 32 32 H 1.07997 * 120.04212 * 180.02562 * 9 8 7 33 33 H 1.08997 * 109.47014 * 59.99553 * 12 11 10 34 34 H 1.08996 * 109.46695 * 179.97438 * 12 11 10 35 35 H 1.08999 * 109.46630 * 299.99391 * 12 11 10 36 36 H 1.08992 * 109.47182 * 54.76504 * 15 13 11 37 37 H 1.09005 * 109.46941 * 174.76189 * 15 13 11 38 38 H 1.09003 * 109.47192 * 294.76133 * 15 13 11 39 39 H 0.97001 * 119.99728 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0323 -0.7104 -1.2306 6 6 2.3664 -2.0492 -1.1681 7 6 2.8224 -2.7029 -2.2979 8 6 2.9564 -2.0166 -3.4911 9 6 2.6292 -0.6768 -3.5593 10 6 2.1653 -0.0182 -2.4273 11 7 1.8329 1.3368 -2.4929 12 6 0.6554 1.5495 -3.3452 13 6 2.9729 2.1365 -2.9607 14 1 3.2369 1.8345 -3.9743 15 6 2.5936 3.6187 -2.9526 16 6 4.1508 1.9143 -2.0474 17 1 4.0614 1.2463 -1.2036 18 6 5.3427 2.5640 -2.2892 19 7 6.3709 2.3697 -1.4924 20 14 5.4971 3.7200 -3.7484 21 1 5.1185 5.0945 -3.3332 22 1 6.9003 3.7186 -4.2347 23 1 4.5954 3.2657 -4.8374 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6962 -1.6481 1.2226 28 1 3.0262 -0.6502 1.2558 29 1 2.2671 -2.5870 -0.2368 30 1 3.0787 -3.7508 -2.2474 31 1 3.3171 -2.5292 -4.3706 32 1 2.7336 -0.1415 -4.4914 33 1 -0.1930 1.0008 -2.9362 34 1 0.4183 2.6128 -3.3784 35 1 0.8673 1.1925 -4.3530 36 1 2.2409 3.8981 -1.9599 37 1 3.4667 4.2185 -3.2101 38 1 1.8033 3.7956 -3.6822 39 1 7.2095 2.8265 -1.6627 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:52:49 Heat of formation + Delta-G solvation = 42.845007 kcal Electronic energy + Delta-G solvation = -19152.213004 eV Core-core repulsion = 16481.079556 eV Total energy + Delta-G solvation = -2671.133448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70509 -36.65014 -35.18035 -32.78297 -30.64294 -29.61378 -28.85456 -28.28574 -25.78650 -24.17744 -23.04241 -21.74063 -19.81275 -19.42892 -16.80618 -16.69726 -15.62971 -15.35149 -14.85045 -14.49732 -14.12614 -13.67796 -13.53786 -13.21362 -12.94994 -12.63034 -12.47944 -12.32825 -11.85659 -11.68642 -11.49136 -11.26219 -10.87535 -10.81160 -10.70497 -10.57019 -10.38514 -10.20208 -9.56435 -9.14353 -8.59985 -8.50938 -8.23324 -7.89533 -7.57347 -6.08464 -4.06485 1.90298 1.91721 3.22682 3.32046 3.35004 4.26513 4.36373 4.62964 5.02197 5.23295 5.28574 5.33671 5.47674 5.65842 5.77767 5.82123 5.86036 5.93192 6.02231 6.12808 6.20852 6.23788 6.30849 6.41766 6.44093 6.49216 6.57669 6.67201 6.72737 6.95497 6.96816 7.06968 7.25865 7.35999 7.58112 7.62517 7.79023 7.86169 8.23943 8.58601 8.99659 9.52767 11.04443 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.008807 C = 0.008615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.609084 B = 3178.437330 C = 3249.396561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.135 3.865 3 H 0.110 0.890 4 N -0.843 5.843 5 C -0.095 4.095 6 C -0.125 4.125 7 C -0.134 4.134 8 C -0.118 4.118 9 C -0.141 4.141 10 C 0.148 3.852 11 N -0.497 5.497 12 C 0.026 3.974 13 C 0.185 3.815 14 H 0.001 0.999 15 C -0.147 4.147 16 C -0.501 4.501 17 H 0.082 0.918 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.883 3.117 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.270 1.270 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.328 0.672 28 H 0.346 0.654 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.029 0.971 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.166 -6.245 -2.049 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.024 3.976 3 H 0.128 0.872 4 N -0.372 5.372 5 C -0.098 4.098 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.136 4.136 9 C -0.161 4.161 10 C 0.054 3.946 11 N -0.218 5.218 12 C -0.121 4.121 13 C 0.079 3.921 14 H 0.018 0.982 15 C -0.205 4.205 16 C -0.539 4.539 17 H 0.100 0.900 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.714 3.286 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.196 1.196 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.158 0.842 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.524 -5.446 -1.109 11.901 hybrid contribution 1.184 -0.210 -2.434 2.715 sum -9.340 -5.655 -3.542 11.479 Atomic orbital electron populations 1.21708 0.94550 1.00712 1.01824 1.20284 0.94570 0.99124 0.83621 0.87213 1.59092 1.16941 1.20339 1.40819 1.20634 0.99701 0.93471 0.96010 1.20742 1.01387 0.94171 0.98058 1.20880 1.01854 0.99288 0.93222 1.20860 1.00697 0.94481 0.97612 1.21585 1.00519 0.94920 0.99081 1.18422 0.95309 0.88995 0.91902 1.59669 1.06511 1.04046 1.51593 1.22440 0.93361 1.01943 0.94401 1.19809 0.88362 0.89075 0.94848 0.98167 1.22223 0.98924 0.98418 1.00891 1.20893 0.93030 1.27501 1.12515 0.89973 1.24892 0.95719 0.96475 0.95909 1.69876 1.02572 1.43275 1.37633 0.86938 0.76223 0.81662 0.83799 1.20490 1.22487 1.19560 0.93926 0.92333 0.92002 0.85897 0.84152 0.86952 0.87001 0.87059 0.86983 0.92281 0.91028 0.96280 0.91865 0.93665 0.95214 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.47 37.16 0.35 -1.56 16 2 C 0.14 2.32 3.29 -68.86 -0.23 2.09 16 3 H 0.11 2.27 7.63 -51.93 -0.40 1.87 16 4 N -0.84 -12.99 8.82 -5.66 -0.05 -13.04 16 5 C -0.10 -1.73 4.88 -104.42 -0.51 -2.24 16 6 C -0.12 -2.03 9.26 -39.61 -0.37 -2.40 16 7 C -0.13 -2.13 10.04 -39.55 -0.40 -2.53 16 8 C -0.12 -1.99 10.04 -39.61 -0.40 -2.39 16 9 C -0.14 -2.69 8.62 -39.38 -0.34 -3.03 16 10 C 0.15 2.93 3.45 -83.79 -0.29 2.64 16 11 N -0.50 -9.90 3.65 -172.68 -0.63 -10.53 16 12 C 0.03 0.42 9.08 60.07 0.55 0.96 16 13 C 0.18 4.27 1.34 -68.86 -0.09 4.17 16 14 H 0.00 0.02 6.13 -51.93 -0.32 -0.30 16 15 C -0.15 -3.14 8.26 37.16 0.31 -2.83 16 16 C -0.50 -13.73 8.64 -34.44 -0.30 -14.03 16 17 H 0.08 2.48 7.39 -52.49 -0.39 2.09 16 18 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 19 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 20 Si 0.88 21.77 24.41 -169.99 -4.15 17.62 16 21 H -0.28 -6.66 6.83 56.52 0.39 -6.28 16 22 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.91 7.04 -51.93 -0.37 0.54 16 27 H 0.33 4.33 7.21 -39.29 -0.28 4.05 16 28 H 0.35 5.62 9.06 -39.29 -0.36 5.26 16 29 H 0.11 1.54 6.29 -52.49 -0.33 1.21 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.11 2.13 7.04 -52.49 -0.37 1.76 16 33 H 0.06 0.86 7.06 -51.93 -0.37 0.50 16 34 H 0.07 1.10 6.19 -51.93 -0.32 0.78 16 35 H 0.02 0.30 7.52 -51.93 -0.39 -0.09 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.04 1.02 3.22 -51.93 -0.17 0.85 16 38 H 0.03 0.54 6.60 -51.93 -0.34 0.19 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 300.35 15.07 4.53 4.53 Total: -1.00 -29.63 300.35 -7.03 -36.66 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.69 Total: 10.25 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -1.81 Total: -19.18 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.09 Total: -49.89 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.15 Total: 17.62 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.63 -7.03 -36.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.506 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds