Wall clock time and date at job start Mon Mar 30 2020 21:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46845 * 2 1 4 4 C 1.50701 * 109.47007 * 120.00391 * 2 1 3 5 5 H 1.08003 * 119.99841 * 120.00572 * 4 2 1 6 6 C 1.37873 * 119.99853 * 299.99338 * 4 2 1 7 7 N 1.31518 * 120.00221 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46776 * 90.00514 * 8 6 4 10 10 H 1.48498 * 109.47351 * 210.00470 * 8 6 4 11 11 H 1.48501 * 109.47064 * 330.00488 * 8 6 4 12 12 C 1.50702 * 109.46977 * 240.00306 * 2 1 3 13 13 C 1.39869 * 126.03879 * 300.02417 * 12 2 1 14 14 N 1.30840 * 108.20039 * 180.02562 * 13 12 2 15 15 N 1.40087 * 108.20765 * 359.97438 * 14 13 12 16 16 C 1.46499 * 126.03660 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46840 * 265.02398 * 16 15 14 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47317 * 59.99960 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.34952 * 107.92313 * 0.27145 * 15 14 13 23 23 H 1.08998 * 109.47145 * 59.99858 * 1 2 3 24 24 H 1.09004 * 109.46879 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47120 * 299.99491 * 1 2 3 26 26 H 0.96998 * 119.99567 * 179.97438 * 7 6 4 27 27 H 1.07998 * 125.90085 * 359.97438 * 13 12 2 28 28 H 1.08992 * 109.47397 * 25.02734 * 16 15 14 29 29 H 1.09002 * 109.47398 * 300.00326 * 17 16 15 30 30 H 1.09001 * 109.47194 * 60.00507 * 17 16 15 31 31 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 33 33 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 35 35 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 36 36 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 37 37 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 39 39 H 1.07999 * 126.12565 * 179.73466 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6306 -0.5441 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7121 12 6 2.0323 -0.7104 -1.2305 13 6 1.7730 -2.0406 -1.5762 14 7 2.3777 -2.2939 -2.7085 15 7 3.0414 -1.1309 -3.1201 16 6 3.8410 -0.9801 -4.3383 17 6 5.3161 -1.2238 -4.0134 18 6 6.1513 -1.0657 -5.2855 19 6 5.9777 0.3509 -5.8369 20 6 4.5026 0.5946 -6.1617 21 6 3.6674 0.4365 -4.8896 22 6 2.8185 -0.1756 -2.1933 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7084 1.1608 3.4844 27 1 1.1774 -2.7384 -1.0065 28 1 3.5087 -1.7034 -5.0829 29 1 5.6485 -0.5005 -3.2688 30 1 5.4398 -2.2329 -3.6203 31 1 7.2022 -1.2397 -5.0543 32 1 5.8191 -1.7887 -6.0305 33 1 6.5724 0.4634 -6.7435 34 1 6.3100 1.0739 -5.0920 35 1 4.1703 -0.1285 -6.9067 36 1 4.3789 1.6040 -6.5541 37 1 2.6166 0.6106 -5.1209 38 1 3.9997 1.1595 -4.1447 39 1 3.1976 0.8354 -2.2172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259870921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:53:36 Heat of formation + Delta-G solvation = 47.757725 kcal Electronic energy + Delta-G solvation = -18142.654444 eV Core-core repulsion = 15471.734027 eV Total energy + Delta-G solvation = -2670.920417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60681 -38.30038 -34.35667 -32.51979 -31.03386 -30.79733 -28.88547 -27.31624 -24.99117 -22.99331 -22.80689 -21.51104 -20.41271 -19.47522 -18.79570 -16.66496 -15.83344 -15.16088 -14.63610 -14.51373 -14.31312 -14.06606 -13.80702 -12.91836 -12.73267 -12.60383 -12.44097 -12.29907 -11.91671 -11.42525 -11.30231 -11.25760 -10.86329 -10.80457 -10.80339 -10.55893 -10.42186 -10.25331 -10.19301 -9.85838 -9.32555 -8.86362 -8.60335 -8.25986 -7.30952 -5.90405 -3.95594 2.65085 3.07595 3.35763 3.42309 3.46343 3.82685 4.45219 4.52476 4.56156 4.71997 4.89051 5.02538 5.16287 5.26614 5.28014 5.39937 5.42801 5.51566 5.64035 5.70267 5.82387 5.86411 5.94335 5.96677 6.03240 6.14855 6.24752 6.53675 6.67253 6.88543 7.03618 7.21827 7.39818 7.59007 7.78526 7.87087 8.05591 8.23149 8.50239 8.60202 9.07494 9.68499 11.15124 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033524 B = 0.004972 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.033925 B = 5629.808321 C = 5805.172771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.106 3.894 3 H 0.028 0.972 4 C -0.499 4.499 5 H 0.054 0.946 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.173 4.173 13 C 0.055 3.945 14 N -0.320 5.320 15 N -0.383 5.383 16 C 0.172 3.828 17 C -0.131 4.131 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.129 4.129 22 C 0.020 3.980 23 H 0.005 0.995 24 H 0.025 0.975 25 H 0.082 0.918 26 H 0.258 0.742 27 H 0.175 0.825 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -0.130 -15.831 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 H 0.046 0.954 4 C -0.538 4.538 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.184 4.184 13 C -0.130 4.130 14 N -0.141 5.141 15 N -0.168 5.168 16 C 0.070 3.930 17 C -0.170 4.170 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.168 4.168 22 C -0.122 4.122 23 H 0.024 0.976 24 H 0.045 0.955 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.192 0.808 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.697 -0.879 -16.693 18.403 hybrid contribution 0.196 0.167 1.636 1.657 sum 7.892 -0.712 -15.056 17.014 Atomic orbital electron populations 1.21736 0.98167 0.98980 0.99762 1.17202 0.92161 0.94506 0.87447 0.95376 1.21163 1.30419 1.12108 0.90063 0.92741 1.24950 0.95244 0.95078 0.98799 1.69891 1.37096 1.23146 1.23131 0.86639 0.78488 0.80179 0.82954 1.20890 1.21338 1.19964 1.20890 1.03216 0.94675 0.99604 1.23692 0.99050 0.96894 0.93374 1.77140 1.14537 1.06296 1.16103 1.48463 1.41112 1.08717 1.18484 1.21002 0.89841 0.98004 0.84183 1.21992 0.93736 1.02989 0.98259 1.21501 0.99843 0.97087 0.96880 1.21598 0.96343 0.97162 1.00968 1.21488 0.94867 1.02022 0.96798 1.21911 1.01139 0.95681 0.98078 1.22122 1.02906 0.95532 0.91690 0.97615 0.95547 0.89957 0.93157 0.80822 0.89031 0.91215 0.91178 0.91525 0.91776 0.91810 0.91668 0.91702 0.91312 0.90978 0.90818 0.82398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.86 37.16 0.33 -2.83 16 2 C 0.11 2.70 2.66 -92.92 -0.25 2.45 16 3 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 4 C -0.50 -13.79 8.42 -34.44 -0.29 -14.08 16 5 H 0.05 1.52 7.73 -52.48 -0.41 1.12 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C -0.17 -3.88 4.74 -105.05 -0.50 -4.38 16 13 C 0.06 1.19 11.52 -17.36 -0.20 0.99 16 14 N -0.32 -6.50 12.58 30.62 0.39 -6.12 16 15 N -0.38 -6.86 3.52 -54.87 -0.19 -7.05 16 16 C 0.17 2.30 3.20 -67.93 -0.22 2.08 16 17 C -0.13 -1.58 5.53 -26.73 -0.15 -1.73 16 18 C -0.11 -1.03 5.92 -26.73 -0.16 -1.19 16 19 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 20 C -0.11 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.13 -1.43 4.85 -26.73 -0.13 -1.56 16 22 C 0.02 0.39 10.48 -17.22 -0.18 0.21 16 23 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 24 H 0.03 0.61 8.02 -51.93 -0.42 0.20 16 25 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.17 3.52 8.06 -52.49 -0.42 3.10 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.83 7.16 -51.93 -0.37 0.46 16 39 H 0.16 2.69 7.26 -52.49 -0.38 2.31 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -29.98 311.89 -8.17 -38.15 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.52 Total: -0.54 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.15 Total: -20.72 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.82 Total: -38.09 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.98 -8.17 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.912 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds