Wall clock time and date at job start Mon Mar 30 2020 21:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46931 * 2 1 4 4 C 1.50695 * 109.47056 * 120.00028 * 2 1 3 5 5 C 1.38228 * 119.62205 * 270.44882 * 4 2 1 6 6 C 1.38622 * 119.16398 * 180.02562 * 5 4 2 7 7 C 1.38673 * 118.42311 * 359.97438 * 6 5 4 8 8 C 1.38180 * 119.15869 * 0.28135 * 7 6 5 9 9 N 1.31856 * 119.61743 * 90.46923 * 4 2 1 10 10 N 1.46895 * 109.46853 * 240.00160 * 2 1 3 11 11 C 1.46898 * 111.00168 * 297.17554 * 10 2 1 12 12 C 1.46910 * 110.99704 * 173.22607 * 10 2 1 13 13 C 1.53004 * 109.46636 * 305.58670 * 12 10 2 14 14 C 1.52998 * 109.47079 * 65.58593 * 12 10 2 15 15 C 1.50704 * 109.46911 * 185.58830 * 12 10 2 16 16 H 1.07996 * 120.00160 * 359.97438 * 15 12 10 17 17 C 1.37876 * 119.99603 * 179.97438 * 15 12 10 18 18 N 1.31511 * 120.00057 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99673 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47095 * 59.99895 * 19 17 15 21 21 H 1.48504 * 109.46944 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47169 * 299.99857 * 19 17 15 23 23 H 1.08998 * 109.46719 * 67.06857 * 1 2 3 24 24 H 1.08999 * 109.46932 * 187.07018 * 1 2 3 25 25 H 1.08999 * 109.47206 * 307.06839 * 1 2 3 26 26 H 1.08001 * 120.41513 * 0.04584 * 5 4 2 27 27 H 1.08009 * 120.78968 * 179.97438 * 6 5 4 28 28 H 1.07995 * 120.41999 * 179.97438 * 7 6 5 29 29 H 1.08006 * 119.61291 * 179.70102 * 8 7 6 30 30 H 1.09004 * 109.47466 * 36.98764 * 11 10 2 31 31 H 1.08998 * 109.47333 * 156.99499 * 11 10 2 32 32 H 1.09010 * 109.47220 * 276.98702 * 11 10 2 33 33 H 1.08991 * 109.47273 * 66.50284 * 13 12 10 34 34 H 1.09003 * 109.46415 * 186.50426 * 13 12 10 35 35 H 1.08997 * 109.47271 * 306.49686 * 13 12 10 36 36 H 1.08996 * 109.47176 * 52.88170 * 14 12 10 37 37 H 1.09004 * 109.46330 * 172.88087 * 14 12 10 38 38 H 1.08993 * 109.47059 * 292.87767 * 14 12 10 39 39 H 0.97007 * 119.99718 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2512 0.0066 2.3918 6 6 2.7138 -0.6564 3.5179 7 6 2.9396 -2.0220 3.4337 8 6 2.7032 -2.6710 2.2369 9 7 2.2584 -2.0087 1.1866 10 7 2.0196 -0.6924 -1.1994 11 6 1.6046 -2.1016 -1.2001 12 6 3.4792 -0.5735 -1.3170 13 6 3.8757 0.9035 -1.2718 14 6 4.1464 -1.3165 -0.1578 15 6 3.9284 -1.1745 -2.6240 16 1 3.2025 -1.6024 -3.2994 17 6 5.2663 -1.1781 -2.9573 18 7 6.1502 -0.6566 -2.1350 19 14 5.8233 -1.9237 -4.5769 20 1 5.1750 -1.2035 -5.7023 21 1 7.2985 -1.8023 -4.6964 22 1 5.4390 -3.3574 -4.6200 23 1 -0.3633 0.4004 -0.9465 24 1 -0.3633 -1.0198 0.1265 25 1 -0.3633 0.6194 0.8200 26 1 2.0638 1.0698 2.4215 27 1 2.8942 -0.1220 4.4390 28 1 3.3004 -2.5705 4.2912 29 1 2.8813 -3.7336 2.1617 30 1 0.6012 -2.1851 -0.7824 31 1 1.6054 -2.4801 -2.2223 32 1 2.2993 -2.6853 -0.5961 33 1 3.6553 1.3088 -0.2844 34 1 4.9425 0.9996 -1.4743 35 1 3.3120 1.4543 -2.0248 36 1 3.7665 -2.3371 -0.1138 37 1 5.2253 -1.3366 -0.3124 38 1 3.9229 -0.8048 0.7782 39 1 7.0916 -0.6595 -2.3693 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:54:58 Heat of formation + Delta-G solvation = 92.623774 kcal Electronic energy + Delta-G solvation = -19640.306819 eV Core-core repulsion = 16971.331941 eV Total energy + Delta-G solvation = -2668.974879 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60461 -37.33716 -33.74245 -32.14908 -31.27055 -30.03407 -28.57357 -25.82410 -25.23656 -24.32919 -23.03829 -22.93020 -20.59737 -18.41063 -16.52106 -16.01022 -15.61518 -15.20302 -15.15534 -14.18070 -13.93155 -13.73383 -13.31808 -13.00605 -12.43781 -12.21710 -11.92101 -11.70798 -11.55796 -11.15221 -10.92316 -10.84813 -10.65631 -10.54782 -10.24617 -10.20260 -9.98373 -9.81312 -9.64457 -9.12542 -8.75946 -8.72414 -8.31767 -8.09485 -6.81978 -5.88013 -3.94726 1.52509 1.68100 3.37492 3.41096 3.44901 4.21411 4.47307 4.68432 5.05506 5.14198 5.24985 5.38449 5.42225 5.54169 5.70889 5.83671 5.95440 6.04159 6.11946 6.31661 6.45476 6.53376 6.57042 6.61508 6.80028 6.90645 6.95556 7.03223 7.09083 7.13650 7.41596 7.44855 7.70115 7.78512 7.93227 8.08942 8.39955 8.44481 8.61431 8.79068 9.11186 9.70242 11.13676 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.008216 C = 0.007580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.855385 B = 3407.030997 C = 3692.952265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.119 3.881 3 H 0.093 0.907 4 C 0.133 3.867 5 C -0.181 4.181 6 C -0.079 4.079 7 C -0.191 4.191 8 C 0.092 3.908 9 N -0.449 5.449 10 N -0.516 5.516 11 C 0.031 3.969 12 C 0.233 3.767 13 C -0.131 4.131 14 C -0.171 4.171 15 C -0.484 4.484 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.894 3.106 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.279 1.279 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.147 0.853 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.005 0.995 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.010 0.990 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -0.089 9.848 12.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 H 0.111 0.889 4 C -0.005 4.005 5 C -0.202 4.202 6 C -0.105 4.105 7 C -0.211 4.211 8 C -0.066 4.066 9 N -0.158 5.158 10 N -0.238 5.238 11 C -0.117 4.117 12 C 0.145 3.855 13 C -0.189 4.189 14 C -0.230 4.230 15 C -0.522 4.522 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.205 1.205 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.165 0.835 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.024 0.976 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.029 0.971 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.452 -0.271 8.626 11.402 hybrid contribution 1.146 -0.296 0.806 1.432 sum -6.306 -0.567 9.431 11.359 Atomic orbital electron populations 1.21827 0.94363 1.01559 1.01619 1.20941 0.94760 0.98033 0.85484 0.88876 1.22403 0.92132 0.90371 0.95577 1.21883 1.03100 1.01033 0.94151 1.21409 0.96384 0.94514 0.98230 1.21931 1.04042 0.95464 0.99634 1.22746 0.95285 1.00070 0.88469 1.68298 1.10900 1.09111 1.27529 1.62653 1.15712 1.13684 1.31752 1.22548 0.99049 0.90197 0.99927 1.18663 0.80388 0.92417 0.94000 1.21899 1.04182 0.96868 0.95930 1.23017 1.04519 0.99228 0.96199 1.21027 0.91896 1.36834 1.02471 0.92241 1.24870 0.96722 0.95755 0.96859 1.69819 1.01576 1.45967 1.35821 0.86627 0.77167 0.79660 0.84303 1.20382 1.21560 1.20502 0.91319 0.92627 0.93292 0.85609 0.85783 0.85822 0.83537 0.94572 0.93883 0.90815 0.97622 0.89419 0.95026 0.92840 0.90460 0.97119 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.92 37.16 0.33 -1.76 16 2 C 0.12 2.20 2.29 -68.87 -0.16 2.04 16 3 H 0.09 1.75 5.91 -51.93 -0.31 1.44 16 4 C 0.13 2.39 3.07 -82.59 -0.25 2.14 16 5 C -0.18 -2.83 9.38 -39.44 -0.37 -3.20 16 6 C -0.08 -1.10 10.18 -39.28 -0.40 -1.50 16 7 C -0.19 -2.64 10.11 -39.44 -0.40 -3.03 16 8 C 0.09 1.46 10.52 -17.55 -0.18 1.27 16 9 N -0.45 -8.26 3.81 -9.47 -0.04 -8.30 16 10 N -0.52 -11.35 4.60 -221.94 -1.02 -12.37 16 11 C 0.03 0.65 7.61 60.06 0.46 1.11 16 12 C 0.23 5.79 0.43 -132.74 -0.06 5.73 16 13 C -0.13 -3.22 7.69 37.16 0.29 -2.94 16 14 C -0.17 -4.22 6.30 37.16 0.23 -3.99 16 15 C -0.48 -13.31 7.56 -34.44 -0.26 -13.57 16 16 H 0.06 1.67 6.94 -52.49 -0.36 1.31 16 17 C 0.06 1.59 5.11 -17.82 -0.09 1.50 16 18 N -0.89 -25.08 9.30 55.43 0.52 -24.57 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.87 6.41 -51.93 -0.33 0.54 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.15 1.98 8.06 -52.48 -0.42 1.56 16 30 H 0.04 0.68 5.77 -51.93 -0.30 0.38 16 31 H 0.04 0.95 7.29 -51.93 -0.38 0.57 16 32 H 0.07 1.63 3.81 -51.92 -0.20 1.44 16 33 H 0.00 0.11 6.56 -51.93 -0.34 -0.23 16 34 H 0.09 2.38 5.92 -51.93 -0.31 2.07 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 1.32 4.54 -51.93 -0.24 1.08 16 37 H 0.08 2.15 5.91 -51.93 -0.31 1.85 16 38 H 0.01 0.24 4.53 -51.93 -0.24 0.01 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 286.28 15.07 4.31 4.31 Total: -1.00 -29.23 286.28 -7.51 -36.74 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.40 Total: 3.74 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -0.86 Total: -16.19 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.54 Total: -45.24 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.23 -7.51 -36.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.363 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds